pypi: lm | Projects | Ecosyste.ms: Papers

10.1007/s00122-020-03716-8

Linear models for diallel crosses: a review with R functions
Cited by: 11
Author(s): Andrea Onofri, Niccolò Terzaroli, Luigi Russi
Software Mentions: 19
Published: over 3 years ago

Unsupervised identification of disease states from high‐dimensional physiological and histopathological profiles
Cited by: 11
Author(s): Kenichi Shimada, Timothy J. Mitchison
Software Mentions: 17
Published: over 5 years ago

10.1534/g3.119.400018

BGData - A Suite of R Packages for Genomic Analysis with Big Data
Cited by: 23
Author(s): Alexander Grueneberg, Gustavo de los Campos
Software Mentions: 16
Published: about 5 years ago

10.1371/journal.pone.0195112

Verrucomicrobia are prevalent in north-temperate freshwater lakes and display class-level preferences between lake habitats
Cited by: 43
Author(s): Edna Chiang, Marian L. Schmidt, Michelle A. Berry, Bopaiah A. Biddanda, Ashley M. Burtner, Thomas H. Johengen, Danna Palladino, Vincent J. Denef
Software Mentions: 16
Published: about 6 years ago

10.1177/0271678X17713901

Modified structural network backbone in the contralesional hemisphere chronically after stroke in rat brain
Cited by: 21
Author(s): Michel R.T. Sinke, Willem M. Otte, Maurits Pa van Meer, Annette van der Toorn, Rick M. Dijkhuizen
Software Mentions: 13
Published: almost 7 years ago

10.3390/microorganisms9010092

Grapevine Microbiota Reflect Diversity among Compartments and Complex Interactions within and among Root and Shoot Systems
Cited by: 23
Author(s): Joel F. Swift, Megan E. Hall, Zachary N. Harris, Misha T. Kwasniewski, Allison J. Miller
Software Mentions: 13
Published: over 3 years ago

10.12688/f1000research.27893.1

A guide to creating design matrices for gene expression experiments
Cited by: 18
Author(s): Charity W. Law, Kathleen Zeglinski, Xueyi Dong, Monther Alhamdoosh, Gordon K. Smyth, Matthew E. Ritchie
Software Mentions: 12
Published: over 3 years ago

10.1371/journal.pone.0244350

Knowledge, attitudes, and practices toward COVID-19 among university students in Japan and associated factors: An online cross-sectional survey
Cited by: 82
Author(s): Asuka Hatabu, Xinhua Mao, Yi Zhou, Norihito Kawashita, Zheng Wen, Masao Ueda, Tatsuya Takagi, Yinbao Tian
Software Mentions: 12
Published: over 3 years ago

10.7717/peerj.10849

modelBuildR: an R package for model building and feature selection with erroneous classifications
Cited by: 3
Author(s): Maximilian Knoll, Jennifer Furkel, Jürgen Debus, Amir Abdollahi
Software Mentions: 12
Published: over 3 years ago

10.1038/s41598-021-92406-6

Plasma lipidomic analysis shows a disease progression signature in mdx mice
Cited by: 3
Author(s): Roula Tsonaka, Alexandre Seyer, Annemieke Aartsma‐Rus, Pietro Spitali
Software Mentions: 11
Published: almost 3 years ago

10.1002/ece3.3163

Genome size in arthropods; different roles of phylogeny, habitat and life history in insects and crustaceans
Cited by: 54
Author(s): Kristian Alfsnes, Hans Petter Leinaas, Dag O. Hessen
Software Mentions: 9
Published: almost 7 years ago

10.1111/eva.13296

Ageing European lobsters (Homarus gammarus) using DNA methylation of evolutionarily conserved ribosomal DNA
Cited by: 8
Author(s): Eleanor A. Fairfield, David S. Richardson, Carly L. Daniels, Christopher L. Butler, Ewen Bell, Martin I. Taylor
Software Mentions: 9
Published: over 2 years ago

10.1038/s41598-020-59068-2

Tritrophic interactions follow phylogenetic escalation and climatic adaptation
Cited by: 5
Author(s): Alan Kergunteuil, Lauréline Humair, Anne-Laure Maire, María Fernanda Moreno‐Aguilar, Adrienne L. Godschalx, Pilar Catalán, Sergio Rasmann
Software Mentions: 9
Published: over 4 years ago

10.1186/s42523-021-00118-z

Microbial composition differs between production systems and is associated with growth performance and carcass quality in pigs
Cited by: 5
Author(s): Christian Maltecca, Robert R. Dunn, Yuqing He, Nathan P. McNulty, Constantino Schillebeeckx, Charles V. Schwab, Caleb M Shull, Justin Fix, Francesco Tiezzi
Software Mentions: 9
Published: over 2 years ago

10.1128/mSystems.00897-19

Comparative Analysis of Root Microbiomes of Rice Cultivars with High and Low Methane Emissions Reveals Differences in Abundance of Methanogenic Archaea and Putative Upstream Fermenters
Cited by: 26
Author(s): Zachary Liechty, Christian Santos‐Medellín, Joseph Edwards, Bao‐Anh Thi Nguyen, David Mikhail, Shane Eason, Gregory C. Phillips, Venkatesan Sundaresan
Software Mentions: 9
Published: over 4 years ago

10.1186/s12864-019-5870-3

Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods
Cited by: 56
Author(s): Carrie Wright, Anandita Rajpurohit, Emily E. Burke, Courtney Williams, Leonardo Collado‐Torres, Martha Kimos, Nicholas J. Brandon, A.J. Cross, Daniel R. Weinberger, Joo Heon Shin
Software Mentions: 9
Published: almost 5 years ago

10.1002/ece3.6941

A priori estimation of sequencing effort in complex microbial metatranscriptomes
Cited by: 2
Author(s): Toni Monleón-Getino, Jorge Frias-Lopez
Software Mentions: 8
Published: over 3 years ago

10.1038/s41598-020-66567-9

Texture features explain the susceptibility of grapevine cultivars to Drosophila suzukii (Diptera: Drosophilidae) infestation in ripening and drying grapes
Cited by: 14
Author(s): Lorenzo Tonina, Folco Giomi, Manuel Sancassani, M. Ajelli, Nicola Mori, L. Giongo
Software Mentions: 8
Published: almost 4 years ago

10.1371/journal.pmed.1003413

Body mass index and risk of dying from a bloodstream infection: A Mendelian randomization study
Cited by: 14
Author(s): Tormod Rogne, Erik Solligård, Stephen Burgess, Ben Brumpton, Julie Paulsen, Hallie C. Prescott, Randi Marie Mohus, Lise Tuset Gustad, Arne Mehl, Bjørn Olav Åsvold, Andrew T. DeWan, Jan Kristian Damås
Software Mentions: 8
Published: over 3 years ago

10.3389/fpsyt.2021.596872

Depression Following COVID-19 Lockdown in Severely, Moderately, and Mildly Impacted Areas in China
Cited by: 15
Author(s): Xuerui Han, Shuquan Chen, Kaiwen Bi, Zeyun Yang, Peng Sun
Software Mentions: 8
Published: about 3 years ago

10.1371/journal.pone.0221617

Free will beliefs are better predicted by dualism than determinism beliefs across different cultures
Cited by: 19
Author(s): David Wisniewski, Robert Deutschländer, John‐Dylan Haynes
Software Mentions: 7
Published: over 4 years ago

10.7554/eLife.58615

GWAS of three molecular traits highlights core genes and pathways alongside a highly polygenic background
Cited by: 67
Author(s): Nasa Sinnott-Armstrong, Sahin Naqvi, Manuel A. Rivas, Jonathan K. Pritchard
Software Mentions: 7
Published: over 3 years ago

10.1186/s12864-019-6047-9

Genome-wide effects of social status on DNA methylation in the brain of a cichlid fish, Astatotilapia burtoni
Cited by: 9
Author(s): Austin T. Hilliard, Dan Xie, Zhihai Ma, M Snyder, Russell D. Fernald
Software Mentions: 7
Published: over 4 years ago

10.3389/fpsyg.2017.01849

Discrete- vs. Continuous-Time Modeling of Unequally Spaced Experience Sampling Method Data
Cited by: 65
Author(s): Silvia de Haan-Rietdijk, Manuel C. Voelkle, Loes Keijsers, Ellen L. Hamaker
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-021-87368-8

Alteration of the gut fecal microbiome in children living with HIV on antiretroviral therapy in Yaounde, Cameroon
Cited by: 12
Author(s): William Baiye Abange, Casey Martin, Aubin Nanfack, Laeticia Grace Yatchou, Nichole M. Nusbacher, Clement Assob Nguedia, Hortense Gonsu Kamga, Joseph Fokam, Sean Kennedy, Alexis Ndjolo, Catherine Lozupone, Céline Nguefeu Nkenfou
Software Mentions: 7
Published: about 3 years ago

10.3389/fmicb.2021.719486

Compositional Shift of Bacterial, Archaeal, and Fungal Communities Is Dependent on Trophic Lifestyles in Rice Paddy Soil
Cited by: 5
Author(s): Hyun Kim, Jongbum Jeon, Kiseok Keith Lee, Yong-Hwan Lee
Software Mentions: 7
Published: over 2 years ago

10.7554/eLife.11215

Methylation of RNA polymerase II non-consensus Lysine residues marks early transcription in mammalian cells
Cited by: 35
Author(s): João D. Dias, Tiago Rito, Elena Torlai Triglia, Alexander Kukalev, Carmelo Ferrai, Mita Chotalia, Emily Brookes, Hiroshi Kimurâ, Ana Pombo
Software Mentions: 7
Published: over 8 years ago

10.1371/journal.pone.0188966

AMModels: An R package for storing models, data, and metadata to facilitate adaptive management
Cited by: 2
Author(s): Therese M. Donovan, Jonathan E. Katz
Software Mentions: 7
Published: about 6 years ago

10.1002/ece3.2610

Trade-off between early emergence and herbivore susceptibility mediates exotic success in an experimental California plant community
Cited by: 11
Author(s): Joseph Waterton, Elsa E. Cleland
Software Mentions: 7
Published: over 7 years ago

10.1111/jpy.12767

Quantitative comparison of taxa and taxon concepts in the diatom genus Fragilariopsis : a case study on using slide scanning, multiexpert image annotation, and image analysis in taxonomy 1
Cited by: 9
Author(s): Bánk Beszteri, Claire S. Allen, Gastón O. Almandoz, Leanne K. Armand, María Ángeles Bárcena, Hannelore Cantzler, Xavier Crosta, Oliver Esper, Richard W. Jordan, Gerhard Kauer, Christine Klaas, Michael Kloster, Amy Leventer, Jennifer Pike, Andrés S. Rigual-Hernández
Software Mentions: 7
Published: over 5 years ago

10.7554/eLife.55797

Dopaminergic and opioidergic regulation during anticipation and consumption of social and nonsocial rewards
Cited by: 32
Author(s): Sebastian Korb, Sebastian Jakob Götzendorfer, Claudia Massaccesi, Patrick Sezen, Irene Graf, Matthäus Willeit, Christoph Eisenegger, Giorgia Silani
Software Mentions: 7
Published: over 3 years ago

10.1186/1471-2164-12-544

Prediction of RNA Polymerase II recruitment, elongation and stalling from histone modification data
Cited by: 29
Author(s): Yun Chen, Mette Jørgensen, Raivo Kolde, Xiaobei Zhao, Brian J. Parker, Eivind Valen, Jiayu Wen, Albin Sandelin
Software Mentions: 6
Published: over 12 years ago

10.1371/journal.pone.0186324

Transcription factors, coregulators, and epigenetic marks are linearly correlated and highly redundant
Cited by: 12
Author(s): Tobias Ahsendorf, Franz‐Josef Müller, V.V. Topkar, Jeremy Gunawardena, Roland Eils
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-020-76917-2

Different response of the taxonomic, phylogenetic and functional diversity of birds to forest fragmentation
Cited by: 15
Author(s): Michał Bełcik, Magdalena Lenda, Tatsuya Amano, Piotr Skórka
Software Mentions: 6
Published: over 3 years ago

10.1007/s00125-019-05032-3

Clinical and genetic correlates of islet-autoimmune signatures in juvenile-onset type 1 diabetes
Cited by: 19
Author(s): Laura A. Claessens, Joris Wesselius, Menno van Lummel, Sandra Laban, Flip Mulder, Dick Mul, Tanja Nikolić, Henk‐Jan Aanstoot, Bobby P. C. Koeleman, Bart O. Roep
Software Mentions: 6
Published: over 4 years ago

10.1093/conphys/coab071

Water deprivation compromises maternal physiology and reproductive success in a cold and wet adapted snake Vipera berus
Cited by: 12
Author(s): Mathias Dezetter, Jean‐François Le Galliard, Gaëtan Guiller, Michaël Guillon, Mathieu Leroux‐Coyau, Sandrine Meylan, François Brischoux, Frédéric Angelier, Olivier Lourdais
Software Mentions: 6
Published: over 3 years ago

10.1111/eva.12643

Fitness costs of key point mutations that underlie acaricide target‐site resistance in the two‐spotted spider mite Tetranychus urticae
Cited by: 38
Author(s): Sabina Bajda, Maria Riga, Nicky Wybouw, Stavrini Papadaki, Eleni Ouranou, Seyedeh Masoumeh Fotoukkiaii, John Vontas, Thomas Van Leeuwen
Software Mentions: 6
Published: about 6 years ago

10.1002/evl3.148

Field cricket genome reveals the footprint of recent, abrupt adaptation in the wild
Cited by: 28
Author(s): Sónia Pascoal, Judith Risse, Xiao Zhang, Mark Blaxter, Timothée Cézard, Richard Challis, Karim Gharbi, John Hunt, Sujai Kumar, Emma Langan, Xuan Li, Jack G. Rayner, Michael G. Ritchie, L. Basten Snoek, Urmi Trivedi, Nathan W. Bailey
Software Mentions: 6
Published: over 4 years ago

10.1534/g3.120.401491

High-Throughput Genome-Wide Genotyping To Optimize the Use of Natural Genetic Resources in the Grassland Species Perennial Ryegrass (Lolium perenneL.)
Cited by: 20
Author(s): Thomas Keep, Jean‐Paul Sampoux, José Luis Blanco‐Pastor, Klaus J. Dehmer, Matthew J. Hegarty, Thomas Ledauphin, Isabelle Litrico, Hilde Muylle, Isabel Roldán‐Ruiz, Anna M. Roschanski, Tom Ruttink, Fabien Surault, E. Willner, Philippe Barré
Software Mentions: 6
Published: over 3 years ago

10.1371/journal.ppat.1008179

Molecular dating and viral load growth rates suggested that the eclipse phase lasted about a week in HIV-1 infected adults in East Africa and Thailand
Cited by: 24
Author(s): Morgane Rolland, Sodsai Tovanabutra, Bethany L. Dearlove, Yifan Li, Christopher L. Owen, Éric Lewitus, Eric Sanders‐Buell, Meera Bose, Anne Marie O’Sullivan, Raabya Rossenkhan, Jan Phillipus Lourens Labuschagne, Paul T. Edlefsen, Daniel B. Reeves, Gustavo H. Kijak, Shana Miller, Kultida Poltavee, Jenica Lee, Lydia Bonar, Elizabeth A. Harbolick, Bahar Ahani, Phuc Pham, Hannah Kibuuka, Lucas Maganga, Sorachai Nitayaphan, Fred Sawe, Leigh Anne Eller, Robert A. Gramzinski, Jerome H. Kim, Nelson L. Michael, Merlin L. Robb
Software Mentions: 6
Published: over 4 years ago

10.1016/j.jbc.2021.100877

The RNA-binding protein Nab2 regulates the proteome of the developing Drosophila brain
Cited by: 4
Author(s): Edwin B. Corgiat, Sara M. List, J. Christopher Rounds, Anita H. Corbett, Kenneth H. Moberg
Software Mentions: 6
Published: almost 3 years ago

10.1186/s12859-017-1542-y

flippant–An R package for the automated analysis of fluorescence-based scramblase assays
Cited by: 0
Author(s): Richard Cotton, Birgit Ploier, Michael A. Goren, Anant K. Menon, Johannes Graumann
Software Mentions: 6
Published: about 7 years ago

10.1186/s12883-021-02356-9

Associations of the cerebrospinal fluid hepatocyte growth factor with Alzheimer’s disease pathology and cognitive function
Cited by: 6
Author(s): Lijing Zhao, Zuo-Teng Wang, Ya‐Hui Ma, Wei Zhang, Qiang Dong, Jin‐Tai Yu, Lan Tan, Alzheimer’s Disease Neuroimaging Initiative
Software Mentions: 6
Published: over 2 years ago

10.1186/s12864-020-06990-4

Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assemblies
Cited by: 13
Author(s): Sara Lado, Jean P. Elbers, Mark F. Rogers, José Melo‐Ferreira, Adiya Yadamsuren, Jukka Corander, Petr Hořín, Pamela A. Burger
Software Mentions: 6
Published: over 3 years ago

10.1002/ece3.5489

Effects of contemporary agricultural land cover on Colorado potato beetle genetic differentiation in the Columbia Basin and Central Sands
Cited by: 16
Author(s): Michael S. Crossley, Silvia I. Rondon, Sean D. Schoville
Software Mentions: 6
Published: almost 5 years ago

10.1002/ece3.7967

Closely related parasitic plants have similar host requirements and related effects on hosts
Cited by: 4
Author(s): Diethart Matthies
Software Mentions: 6
Published: almost 3 years ago

10.1186/s12859-021-03982-3

Nonlinear ridge regression improves cell-type-specific differential expression analysis
Cited by: 4
Author(s): Fumihiko Takeuchi, Norihiro Kato
Software Mentions: 6
Published: about 3 years ago

10.1534/g3.113.005728

Population Structure in a Comprehensive Genomic Data Set on Human Microsatellite Variation
Cited by: 113
Author(s): Trevor J. Pemberton, Michael DeGiorgio, Noah A. Rosenberg
Software Mentions: 5
Published: about 11 years ago

10.7717/peerj.8920

Reproductive behavior drives female space use in a sedentary Neotropical frog
Cited by: 9
Author(s): Marius Fischer, Max Ringler, Eva Ringler, Andrius Pašukonis
Software Mentions: 5
Published: about 4 years ago

10.1534/g3.118.200540

Regulation of Root Angle and Gravitropism
Cited by: 19
Author(s): Ted Toal, Mily Ron, Donald J Gibson, Kaisa Kajala, Bessie L. Splitt, Logan Johnson, Nathan D. Miller, Radka Slovak, Allison Gaudinier, Rohan Patel, Miguel de Lucas, Nicholas J. Provart, Edgar P. Spalding, Wolfgang Busch, Daniel J. Kliebenstein, Siobhán M. Brady
Software Mentions: 5
Published: over 5 years ago

10.1038/s41396-021-00923-z

Maize germplasm chronosequence shows crop breeding history impacts recruitment of the rhizosphere microbiome
Cited by: 38
Author(s): Alonso Favela, Martin Bohn, Angela D. Kent
Software Mentions: 5
Published: about 3 years ago

10.1128/mBio.00311-19

Gut Microbiota and Phytoestrogen-Associated Infertility in Southern White Rhinoceros
Cited by: 32
Author(s): Candace L. Williams, Alexis R. Ybarra, Ashley N. Meredith, Barbara S. Durrant, Christopher W. Tubbs
Software Mentions: 5
Published: about 5 years ago

10.1111/mec.14779

How much is enough? Effects of technical and biological replication on metabarcoding dietary analysis
Cited by: 74
Author(s): Vanessa A. Mata, Hugo Rebelo, Francisco Amorim, Gary F. McCracken, Simon Jarman, Pedro Beja
Software Mentions: 5
Published: almost 6 years ago

10.3389/fpls.2020.00086

Parenchyma Abundance in Wood of Evergreen Trees Varies Independently of Nutrients
Cited by: 12
Author(s): Martyna M. Kotowska, Ian J. Wright, Mark Westoby
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0147798

Carcass Type Affects Local Scavenger Guilds More than Habitat Connectivity
Cited by: 61
Author(s): Zachary H. Olson, James C. Beasley, Olin E. Rhodes
Software Mentions: 5
Published: over 8 years ago

10.1371/journal.pone.0188415

Physiological effects of a novel artificially synthesized antimalarial cyclic peptide: Mahafacyclin B
Cited by: 2
Author(s): Yūkō Fujita, Panpaki Seekaki, Naoya Ogata, Kazuhiro Chiba
Software Mentions: 5
Published: over 6 years ago

10.1038/srep33912

Flipper strokes can predict energy expenditure and locomotion costs in free-ranging northern and Antarctic fur seals
Cited by: 25
Author(s): Tiphaine Jeanniard‐du‐Dot, Andrew W. Trites, John P. Y. Arnould, John R. Speakman, Christophe Guinet
Software Mentions: 5
Published: over 7 years ago

10.1371/journal.ppat.1004940

Geometric Constraints Dominate the Antigenic Evolution of Influenza H3N2 Hemagglutinin
Cited by: 41
Author(s): Austin G. Meyer, Claus O. Wilke
Software Mentions: 5
Published: almost 9 years ago

10.1038/s41598-020-68487-0

Variations in foliar carbon:nitrogen and nitrogen:phosphorus ratios under global change: a meta-analysis of experimental field studies
Cited by: 15
Author(s): Shan Xu, Jordi Sardans, Jinlong Zhang, Josep Peñuelas
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-018-36147-z

Geometric morphometrics of nested symmetries unravels hierarchical inter- and intra-individual variation in biological shapes
Cited by: 8
Author(s): Yoland Savriama, Sylvain Gerber
Software Mentions: 5
Published: over 5 years ago

10.3389/fmicb.2019.01714

Temperature Response of Planktonic Microbiota in Remote Alpine Lakes
Cited by: 9
Author(s): Yiming Jiang, Haiying Huang, Ting Ma, Jinlong Ru, Stephan Blank, Rainer Kurmayer, Li Deng
Software Mentions: 5
Published: almost 5 years ago

10.3389/fpls.2015.00191

Patterns in hydraulic architecture from roots to branches in six tropical tree species from cacao agroforestry and their relation to wood density and stem growth
Cited by: 52
Author(s): Martyna M. Kotowska, Dietrich Hertel, Yasmin Abou Rajab, Henry Barus, Bernhard Schuldt
Software Mentions: 5
Published: about 9 years ago

10.1371/journal.pgen.1006498

Genetic Variation in the Social Environment Contributes to Health and Disease
Cited by: 73
Author(s): Amelie Baud, Megan K. Mulligan, Francesco Paolo Casale, Jesse Ingels, Casey Bohl, Jacques Crinon, Jean Marie Launay, Jon P. Krohn, Andrés Legarra, Robert W. Williams, Oliver Stegle
Software Mentions: 5
Published: over 7 years ago

10.3390/cells9030665

Dysregulated Antibody, Natural Killer Cell and Immune Mediator Profiles in Autoimmune Thyroid Diseases
Cited by: 17
Author(s): Tiphaine Martin, Kristina M. Ilieva, Alessia Visconti, Michelle Beaumont, Steven Kiddle, Richard Dobson, Massimo Mangino, Ee Mun Lim, Marija Pezer, Claire J. Steves, Jordana T. Bell, Scott G. Wilson, Gordan Lauc, Mario Roederer, John P. Walsh, Tim D. Spector, Sophia N. Karagiannis
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pgen.1009726

The genetic consequences of dog breed formation—Accumulation of deleterious genetic variation and fixation of mutations associated with myxomatous mitral valve disease in cavalier King Charles spaniels
Cited by: 8
Author(s): Erik Axelsson, Ingrid Ljungvall, Priyasma Bhoumik, Laura Bas Conn, Eva Murén, Åsa Ohlsson, Lisbeth H. Olsen, Karolina Engdahl, Ragnvi Hagman, Jeanette Hanson, Dmytro Kryvokhyzha, Mats E. Pettersson, Olivier Grenet, Jonathan G. Moggs, Alberto Del Río-Espínola, Christian Epe, Bruce E. Taillon, Nilesh R. Tawari, Shrinivas Mane, Troy Hawkins, Åke Hedhammar, Philippe Gruet, Jens Häggström, Kerstin Lindblad‐Toh
Software Mentions: 5
Published: over 2 years ago

10.18632/aging.103497

Plasma sex hormone-binding globulin predicts neurodegeneration and clinical progression in prodromal Alzheimer's disease
Cited by: 9
Author(s): Wei Xu, Bing-Jie Su, Xue–Ning Shen, Yan‐Lin Bi, Cheng Tan, Jieqiong Li, Xi‐Peng Cao, Qiang Dong, Lan Tan, Alzheimer’s Disease Neuroimaging Initiative, Jin‐Tai Yu
Software Mentions: 5
Published: almost 4 years ago

10.1038/s41598-020-76305-w

The resilience of weed seedbank regulation by carabid beetles, at continental scales, to alternative prey
Cited by: 21
Author(s): Benjamin Carbonne, Sandrine Petit, Veronika Neidel, Hana Foffová, Eirini Daouti, Britta Frei, Jiří Skuhrovec, Milan Řezáč, Pavel Saska, Corinna Wallinger, Michael Traugott, David Bohan
Software Mentions: 5
Published: over 3 years ago

10.3389/fninf.2013.00013

White matter fiber tracking directed by interpolating splines and a methodological framework for evaluation
Cited by: 4
Author(s): Are Losnegård, Arvid Lundervold, Erlend Hodneland
Software Mentions: 5
Published: over 11 years ago

10.7554/eLife.68876

High potency of sequential therapy with only β-lactam antibiotics
Cited by: 24
Author(s): Aditi Batra, Roderich Roemhild, Emilie Rousseau, Sören Franzenburg, Stefan Niemann, Hinrich Schulenburg
Software Mentions: 4
Published: almost 3 years ago

10.3390/ijerph16122137

Machine Learning-Based Integration of High-Resolution Wildfire Smoke Simulations and Observations for Regional Health Impact Assessment
Cited by: 28
Author(s): Yufei Zou, Susan O’Neill, Narasimhan K. Larkin, Ernesto Alvarado, Robert C. Solomon, Clifford F. Mass, Yang Liu, M. Talat Odman, Huizhong Shen
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.31835

Landscape genomic prediction for restoration of a Eucalyptus foundation species under climate change
Cited by: 51
Author(s): Megan A. Supple, Jason G. Bragg, Linda Broadhurst, Adrienne B. Nicotra, Margaret Byrne, Rose L. Andrew, Abigail Widdup, Nicola Aitken, Justin O. Borevitz
Software Mentions: 4
Published: about 6 years ago

10.18632/aging.103814

Association of Alzheimer’s disease risk variants on the PICALM gene with PICALM expression, core biomarkers, and feature neurodegeneration
Cited by: 4
Author(s): Wei Xu, Cheng Tan, Xi‐Peng Cao, Lan Tan
Software Mentions: 4
Published: over 3 years ago

10.1016/j.cub.2020.06.028

Connectomics Analysis Reveals First-, Second-, and Third-Order Thermosensory and Hygrosensory Neurons in the Adult Drosophila Brain
Cited by: 67
Author(s): Elizabeth C. Marin, Laurin Büld, M. Theiß, Tatevik Sarkissian, Ruairí J.V. Roberts, Robert Turnbull, Imaan F M Tamimi, Markus William Pleijzier, Willem J. Laursen, Nikolas Drummond, Philipp Schlegel, Alexander Shakeel Bates, Feng Li, Matthias Landgraf, Marta Costa, Davi D. Bock, Paul Garrity, Gregory S.X.E. Jefferis
Software Mentions: 4
Published: almost 4 years ago

10.1099/mic.0.001051

The impact of intra-specific diversity in the rhizobia-legume symbiosis
Cited by: 5
Author(s): Bryden Fields, Emma K Moffat, Ville‐Petri Friman, Ellie Harrison
Software Mentions: 4
Published: about 3 years ago

10.1186/s12859-017-1838-y

pulver: an R package for parallel ultra-rapid p-value computation for linear regression interaction terms
Cited by: 1
Author(s): Sophie Molnos, Clemens Baumbach, Simone Wahl, Martina Müller‐Nurasyid, Konstantin Strauch, Rui Wang-Sattler, Mélanie Waldenberger, Thomas Meitinger, Jerzy Adamski, Gabi Kastenmüller, Karsten Suhre, Annette Peters, Harald Grallert, Fabian J. Theis, Christian Gieger
Software Mentions: 4
Published: over 6 years ago

10.3390/ijms19061783

Suppression of Plant Defenses by Herbivorous Mites Is Not Associated with Adaptation to Host Plants
Cited by: 10
Author(s): Jéssica T Paulo, Diogo Prino Godinho, Ana Silva, Cristina Branquinho, Sara Magalhães
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0249860

The successful reintroduction of African wild dogs (Lycaon pictus) to Gorongosa National Park, Mozambique
Cited by: 15
Author(s): Paola Bouley, António Paulo, Mercia Angela, Cole du Plessis, David G. Marneweck
Software Mentions: 4
Published: about 3 years ago

10.1016/j.celrep.2019.06.049

Comprehensive Immune Monitoring of Clinical Trials to Advance Human Immunotherapy
Cited by: 81
Author(s): Felix J. Hartmann, Joël Babdor, Pier Federico Gherardini, El-ad David Amir, Kyle Jones, Bita Sahaf, Diana M. Márquez, Peter O. Krutzik, Erika O’Donnell, Natalia Sigal, Holden T. Maecker, Everett Meyer, Matthew H. Spitzer, Sean C. Bendall
Software Mentions: 4
Published: almost 5 years ago

10.1371/journal.pone.0047722

Beyond Streptococcus mutans: Dental Caries Onset Linked to Multiple Species by 16S rRNA Community Analysis
Cited by: 378
Author(s): Erin L. Gross, Clifford J. Beall, Stacey R. Kutsch, Noah D. Firestone, Eugene J. Leys, Ann L. Griffen
Software Mentions: 4
Published: over 11 years ago

10.1038/s41598-020-66630-5

Single-cell RNA sequencing reveals that lung mesenchymal progenitor cells in IPF exhibit pathological features early in their differentiation trajectory
Cited by: 23
Author(s): Daniel Beisang, Karen Smith, Libang Yang, Alexey O. Benyumov, Adam Gilbertsen, Jeremy Herrera, Eric F. Lock, Emilian Racila, Colleen L. Forster, Brian J Sandri, Craig A. Henke, Peter B. Bitterman
Software Mentions: 4
Published: almost 4 years ago

10.1371/journal.pone.0215446

Influence of starvation on walking behavior of Bagrada hilaris (Hemiptera: Pentatomidae)
Cited by: 14
Author(s): Ian M. Grettenberger, Shimat V. Joseph
Software Mentions: 4
Published: about 5 years ago

10.1038/s41597-020-0514-7

Integrated analysis of a compendium of RNA-Seq datasets for splicing factors
Cited by: 2
Author(s): Peng Yu, Li Jin, Su Deng, Feiran Zhang, Petar Grozdanov, Eunice W. M. Chin, Sheree D. Martin, Laurent Vergnes, Mohammad S. Islam, Deqiang Sun, Janine M. LaSalle, Sean L. McGee, Eyleen L. K. Goh, Clinton C. MacDonald, Peng Jin
Software Mentions: 4
Published: almost 4 years ago

10.1007/s10071-020-01345-8

Why do dogs look back at the human in an impossible task? Looking back behaviour may be over-interpreted
Cited by: 31
Author(s): Martina Lazzaroni, Sarah Marshall-Pescini, Helena Manzenreiter, Sarah Gosch, Lucy Přibilová, Larissa Darc, Jim McGetrick, Friederike Range
Software Mentions: 4
Published: about 4 years ago

10.1126/sciadv.aay1048

Variable effects of local management on coral defenses against a thermally regulated bleaching pathogen
Cited by: 14
Author(s): Deanna S. Beatty, Jinu Mathew Valayil, Cody S. Clements, Kim B. Ritchie, Frank J. Stewart, Mark E. Hay
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pone.0125663

Protein Structure and Evolution: Are They Constrained Globally by a Principle Derived from Information Theory?
Cited by: 5
Author(s): Les Hatton, Gregory W. Warr
Software Mentions: 4
Published: about 9 years ago

10.1186/s12915-019-0646-4

Enabling cell-type-specific behavioral epigenetics in Drosophila: a modified high-yield INTACT method reveals the impact of social environment on the epigenetic landscape in dopaminergic neurons
Cited by: 15
Author(s): Pavan Agrawal, Phuong Chung, Ulrike Heberlein, Clement F. Kent
Software Mentions: 4
Published: about 5 years ago

10.3389/fpls.2021.678959

Variation in Methyl Jasmonate-Induced Defense Among Norway Spruce Clones and Trade-Offs in Resistance Against a Fungal and an Insect Pest
Cited by: 10
Author(s): Adriana Puentes, Tao Zhao, Lina Lundborg, Niklas Björklund, Anna‐Karin Borg‐Karlson
Software Mentions: 4
Published: almost 3 years ago

10.3390/e22020153

Selection Consistency of Lasso-Based Procedures for Misspecified High-Dimensional Binary Model and Random Regressors
Cited by: 2
Author(s): Mariusz Kubkowski, Jan Mielniczuk
Software Mentions: 4
Published: over 4 years ago

10.1186/gb-2014-15-1-r4

Global regulation of mRNA translation and stability in the early Drosophila embryo by the Smaug RNA-binding protein
Cited by: 93
Author(s): Li-Nan Chen, Jason G Dumelie, Xiao Li, Matthew Hong Kei Cheng, Zhiyong Yang, John Laver, Najeeb U. Siddiqui, J. Timothy Westwood, Quaid Morris, Howard D. Lipshitz, Craig Smibert
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pgen.1005650

A Flexible, Efficient Binomial Mixed Model for Identifying Differential DNA Methylation in Bisulfite Sequencing Data
Cited by: 92
Author(s): Amanda J. Lea, Jenny Tung, Xiang Zhou
Software Mentions: 4
Published: over 8 years ago

10.3390/ani10112123

Social Network Analysis of Agonistic Behaviour and Its Association with Economically Important Traits in Pigs
Cited by: 8
Author(s): Saif Agha, E. Fábrega, Raquel Quintanilla, Juan Pablo Sánchez
Software Mentions: 4
Published: over 3 years ago

10.1186/s13073-021-00853-7

Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis
Cited by: 20
Author(s): Damian R. Plichta, Juhi Somani, Matthieu Pichaud, Zachary S Wallace, Ana D. Fernandes, Cory A. Perugino, Harri Lähdesmäki, John H. Stone, Hera Vlamakis, Daniel C. Chung, Dinesh Khanna, Shiv Pillai, Ramnik J. Xavier
Software Mentions: 4
Published: about 3 years ago

10.1186/s12870-021-02997-5

Low nitrogen availability inhibits the phosphorus starvation response in maize (Zea mays ssp. mays L.)
Cited by: 10
Author(s): J. Vladimir Torres-Rodríguez, M. Nancy Salazar-Vidal, Ricardo A. Chávez Montes, Julio A. Massange‐Sánchez, C. Stewart Gillmor, Ruairidh J. H. Sawers
Software Mentions: 4
Published: almost 3 years ago

10.1371/journal.pone.0257226

Comparing the reliability of relative bird abundance indices from standardized surveys and community science data at finer resolutions
Cited by: 4
Author(s): Mei-Ling E. Feng, Judy Che‐Castaldo
Software Mentions: 4
Published: over 2 years ago

10.3390/ani11030865

Habitat Elevation Shapes Microbial Community Composition and Alter the Metabolic Functions in Wild Sable (Martes zibellina) Guts
Cited by: 7
Author(s): Lantian Su, Xinxin Liu, Guang-Yao Jin, Yue Ma, Haoxin Tan, Muhammed Abdul Khalid, Martin Romantschuk, Shan Yin, Nan Hui
Software Mentions: 4
Published: about 3 years ago

10.1371/journal.pgen.1008512

Common gardens in teosintes reveal the establishment of a syndrome of adaptation to altitude
Cited by: 18
Author(s): Margaux-Alison Fustier, Natalia Elena Martínez Ainsworth, Jonás A. Aguirre‐Liguori, Anthony Venon, Hélène Corti, Agnès Rousselet, Fabrice Dumas, Hannes Dittberner, Maria Guadalupe Camarena, Daniel Grimanelli, Otso Ovaskainen, Matthieu Falque, Laurence Moreau, Juliette de Meaux, Salvador Montes‐Hernández, Luis E. Eguiarte, Yves Vigouroux, Doménica Manicacci, Maud I. Tenaillon
Software Mentions: 4
Published: over 4 years ago

10.1186/1471-2288-14-14

A Monte Carlo simulation study comparing linear regression, beta regression, variable-dispersion beta regression and fractional logit regression at recovering average difference measures in a two sample design
Cited by: 16
Author(s): Christopher Meaney, Rahim Moineddin
Software Mentions: 4
Published: over 10 years ago

10.1371/journal.pone.0194541

A sibling method for identifying vQTLs
Cited by: 22
Author(s): Dalton Conley, Rebecca A. Johnson, Ben Domingue, Christopher T. Dawes, Jason D. Boardman, Mark L. Siegal
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2105-14-166

GWAS on your notebook: fast semi-parallel linear and logistic regression for genome-wide association studies
Cited by: 35
Author(s): Karolina Sikorska, Emmanuel Lesaffre, Patrick J. F. Groenen, Paul H.C. Eilers
Software Mentions: 4
Published: almost 11 years ago

10.1371/journal.pcbi.1009131

MiDAS—Meaningful Immunogenetic Data at Scale
Cited by: 9
Author(s): Maciej Migdał, Dan Fu Ruan, William F. Forrest, Amir Horowitz, Christian Hammer
Software Mentions: 4
Published: almost 3 years ago

Projects: pypi: lm

Papers Mentioning lm 267