Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12864-019-5870-3

https://doi.org/10.1186/s12864-019-5870-3

Comprehensive assessment of multiple biases in small RNA sequencing reveals significant differences in the performance of widely used methods

Cited by: 56
Author(s): Carrie Wright, Anandita Rajpurohit, Emily E. Burke, Courtney Williams, Leonardo Collado‐Torres, Martha Kimos, Nicholas J. Brandon, A.J. Cross, Daniel R. Weinberger, Joo Heon Shin
Published: over 5 years ago

Software Mentions 9

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: ffpe
Quality assessment and control for FFPE microarray expression data
Papers that mentioned: 2
cran: compute.es
Compute Effect Sizes
Papers that mentioned: 38
cran: sjstats
Collection of Convenient Functions for Common Statistical Computations
Papers that mentioned: 74
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: house
A lib to persist blobs by their sha256
Papers that mentioned: 960
pypi: lm
End to End Language Model Pipeline built for training speed
Papers that mentioned: 267
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105