Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/microorganisms9010092

https://doi.org/10.3390/microorganisms9010092

Grapevine Microbiota Reflect Diversity among Compartments and Complex Interactions within and among Root and Shoot Systems

Cited by: 23
Author(s): Joel F. Swift, Megan E. Hall, Zachary N. Harris, Misha T. Kwasniewski, Allison J. Miller
Published: almost 4 years ago

Software Mentions 13

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: car
Companion to Applied Regression
Papers that mentioned: 1,651
cran: emmeans
Estimated Marginal Means, aka Least-Squares Means
Papers that mentioned: 1,009
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: ranger
A Fast Implementation of Random Forests
Papers that mentioned: 91
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: car
Papers that mentioned: 1,651
pypi: lm
End to End Language Model Pipeline built for training speed
Papers that mentioned: 267
pypi: qiime
Quantitative Insights Into Microbial Ecology
Papers that mentioned: 157
pypi: ranger
A Python package for the manipulation of Range objects
Papers that mentioned: 91