Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.27893.1

https://doi.org/10.12688/f1000research.27893.1

Cited by: 18
Author(s): Charity W. Law, Kathleen Zeglinski, Xueyi Dong, Monther Alhamdoosh, Gordon K. Smyth, Matthew E. Ritchie
Published: over 3 years ago

Software Mentions 12

bioconductor: BiocWorkflowTools

Tools to aid the development of Bioconductor Workflow packages
Papers that mentioned: 2

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: edgeR

Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568

bioconductor: ExploreModelMatrix

Graphical Exploration of Design Matrices
Papers that mentioned: 2

bioconductor: Glimma

Interactive HTML graphics
Papers that mentioned: 17

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

cran: knitr

A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157

cran: Matrix

Sparse and Dense Matrix Classes and Methods
Papers that mentioned: 172

cran: TeachingDemos

Demonstrations for Teaching and Learning
Papers that mentioned: 7

pypi: lm

End to End Language Model Pipeline built for training speed
Papers that mentioned: 267

pypi: splines

Splines in Euclidean Space and Beyond
Papers that mentioned: 91

pypi: stats

Calculator-style statistical functions
Papers that mentioned: 3,105