Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1751-0473-8-1

https://doi.org/10.1186/1751-0473-8-1

MmPalateMiRNA, an R package compendium illustrating analysis of miRNA microarray data

Cited by: 11
Author(s): Guy Brock, Partha Mukhopadhyay, Vasyl Pihur, Cynthia L. Webb, Robert M. Greene, M. Michele Pisano
Published: almost 12 years ago

Software Mentions 24

bioconductor: arrayQualityMetrics
Quality metrics report for microarray data sets
Papers that mentioned: 190
bioconductor: Biobase
Biobase: Base functions for Bioconductor
Papers that mentioned: 104
bioconductor: Category
Category Analysis
Papers that mentioned: 21
bioconductor: ExiMiR
R functions for the normalization of Exiqon miRNA array data
Papers that mentioned: 3
bioconductor: GOstats
Tools for manipulating GO and microarrays
Papers that mentioned: 368
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: microRNA
Data and functions for dealing with microRNAs
Papers that mentioned: 63
bioconductor: miRNApath
miRNApath: Pathway Enrichment for miRNA Expression Data
Papers that mentioned: 13
bioconductor: RmiR
Papers that mentioned: 10
bioconductor: vsn
Variance stabilization and calibration for microarray data
Papers that mentioned: 91
cran: class
Functions for Classification
Papers that mentioned: 34
cran: cluster
"Finding Groups in Data": Cluster Analysis Extended Rousseeuw et al.
Papers that mentioned: 416
cran: clValid
Validation of Clustering Results
Papers that mentioned: 62
cran: DBI
R Database Interface
Papers that mentioned: 12
cran: lattice
Trellis Graphics for R
Papers that mentioned: 251
cran: latticeExtra
Extra Graphical Utilities Based on Lattice
Papers that mentioned: 60
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: RSQLite
SQLite Interface for R
Papers that mentioned: 27
cran: statmod
Statistical Modeling
Papers that mentioned: 55
cran: xtable
Export Tables to LaTeX or HTML
Papers that mentioned: 32
pypi: class
A simple class!
Papers that mentioned: 34
pypi: cluster

Papers that mentioned: 416
pypi: lattice
A framework for developing data models, including schema development and documentation.
Papers that mentioned: 251
pypi: xtable
operate table format in console. console table, csv, json, yaml and markdown.
Papers that mentioned: 32