cran: class | Projects | Ecosyste.ms: Papers

10.1186/1751-0473-8-1

MmPalateMiRNA, an R package compendium illustrating analysis of miRNA microarray data
Cited by: 11
Author(s): Guy Brock, Partha Mukhopadhyay, Vasyl Pihur, Cynthia L. Webb, Robert M. Greene, M. Michele Pisano
Software Mentions: 24
Published: almost 12 years ago

10.1186/1471-2105-9-439

CMA – a comprehensive Bioconductor package for supervised classification with high dimensional data
Cited by: 90
Author(s): Martin Slawski, Martin Däumer, Anne‐Laure Boulesteix
Software Mentions: 16
Published: about 16 years ago

10.1186/1472-6947-13-126

Evaluation of prediction models for the staging of prostate cancer
Cited by: 19
Author(s): Susie Boyce, Yue Fan, R. William G. Watson, Brendan Murphy
Software Mentions: 16
Published: almost 11 years ago

10.1038/s42003-021-01757-3

Jaw shape and mechanical advantage are indicative of diet in Mesozoic mammals
Cited by: 20
Author(s): Nuria Melisa Morales-García, Pamela G. Gill, Christine M. Janis, Emily J. Rayfield
Software Mentions: 16
Published: over 3 years ago

10.1038/s41598-020-69361-9

Effects of different intracranial volume correction methods on univariate sex differences in grey matter volume and multivariate sex prediction
Cited by: 28
Author(s): Carles Sanchis‐Segura, M.V. Ibáñez-Gual, Naiara Aguirre, Álvaro Javier Cruz-Gómez, Cristina Forn
Software Mentions: 14
Published: over 4 years ago

10.1371/journal.pone.0212669

Batch adjustment by reference alignment (BARA): Improved prediction performance in biological test sets with batch effects
Cited by: 3
Author(s): Robin Gradin, Malin Lindstedt, Henrik J. Johansson
Software Mentions: 13
Published: over 5 years ago

10.3390/metabo7020030

Evaluation of Classifier Performance for Multiclass Phenotype Discrimination in Untargeted Metabolomics
Cited by: 33
Author(s): Patrick J. Trainor, Andrew P. DeFilippis, N. Shesh
Software Mentions: 12
Published: over 7 years ago

10.1186/s12918-018-0662-y

Integrating node embeddings and biological annotations for genes to predict disease-gene associations
Cited by: 27
Author(s): Sezin Kircali Ata, Le Ou-Yang, Yuan Fang, Chee-Keong Kwoh, Min Wu, Xiaoli Li
Software Mentions: 11
Published: almost 6 years ago

10.1371/journal.pone.0095753

A Comparison of Supervised Machine Learning Algorithms and Feature Vectors for MS Lesion Segmentation Using Multimodal Structural MRI
Cited by: 41
Author(s): Elizabeth Sweeney, Joshua T. Vogelstein, Jennifer L. Cuzzocreo, Peter A. Calabresi, Daniel S. Reich, Ciprian M. Crainiceanu, Russell T. Shinohara
Software Mentions: 10
Published: over 10 years ago

10.1038/s41598-019-48986-5

Assessing Susceptibility of Debris Flow in Southwest China Using Gradient Boosting Machine
Cited by: 36
Author(s): Baofeng Di, Hanyue Zhang, Yongyao Liu, Jierui Li, Ningsheng Chen, Constantine A. Stamatopoulos, Yuzhou Luo, Yu Zhan
Software Mentions: 10
Published: about 5 years ago

10.7717/peerj.5055

A novel approach to study the morphology and chemistry of pollen in a phylogenetic context, applied to the halophytic taxon <i>Nitraria</i> L.(Nitrariaceae)
Cited by: 19
Author(s): Amber Woutersen, Phillip E. Jardine, Raúl Giovanni Bogotá-Ángel, Hongxiang Zhang, Daniele Silvestro, Alexandre Antonelli, Elena Gogna, Roy Erkens, William D. Gosling, Guillaume Dupont‐Nivet, Carina Hoorn
Software Mentions: 9
Published: over 6 years ago

10.1186/s13040-016-0086-4

Prediction of donor splice sites using random forest with a new sequence encoding approach
Cited by: 31
Author(s): Prabina Kumar Meher, Tanmaya Kumar Sahu, Atmakuri Ramakrishna Rao
Software Mentions: 9
Published: almost 9 years ago

10.1371/journal.pone.0071218

Novel Three-Step Pseudo-Absence Selection Technique for Improved Species Distribution Modelling
Cited by: 137
Author(s): Senait D. Senay, Susan P. Worner, Takayoshi Ikeda
Software Mentions: 9
Published: about 11 years ago

10.1038/s41598-020-69772-8

SomaticCombiner: improving the performance of somatic variant calling based on evaluation tests and a consensus approach
Cited by: 15
Author(s): Mingyi Wang, Wen Luo, Kristine Jones, Xiaopeng Bian, Russell D. Williams, Herbert Higson, Dongjing Wu, Belynda Hicks, Meredith Yeager, Bin Zhu
Software Mentions: 9
Published: over 4 years ago

10.1186/s12957-018-1519-y

Identification of hub genes with diagnostic values in pancreatic cancer by bioinformatics analyses and supervised learning methods
Cited by: 23
Author(s): Chunyang Li, Xiaoxi Zeng, Haopeng Yu, Yuanxia Gu, Wei Zhang
Software Mentions: 8
Published: almost 6 years ago

10.1186/1471-2105-13-S10-S17

Gene network modular-based classification of microarray samples
Cited by: 4
Author(s): Pingzhao Hu, Shelley B. Bull, Hui Jiang
Software Mentions: 7
Published: over 12 years ago

10.1534/g3.117.300479

Multivariate Analysis of the Cotton Seed Ionome Reveals a Shared Genetic Architecture
Cited by: 13
Author(s): Duke Pauli, Gregory R. Ziegler, Min Ren, Matthew A. Jenks, Douglas J. Hunsaker, Min Zhang, Ivan Baxter, Michael A. Gore
Software Mentions: 7
Published: over 6 years ago

10.1093/gigascience/giy093

Leveraging multiple transcriptome assembly methods for improved gene structure annotation
Cited by: 110
Author(s): Luca Venturini, Shabhonam Caim, Gemy Kaithakottil, Daniel Mapleson, David Swarbreck
Software Mentions: 7
Published: over 6 years ago

10.1007/s41114-017-0010-3

Cosmology and fundamental physics with the Euclid satellite
Cited by: 600
Author(s): Luca Amendola, Stephen Appleby, Anastasios Avgoustidis, David Bacon, Tessa Baker, Marco Baldi, N. Bartolo, Alain Blanchard, Camille Bonvin, S. Borgani, E. Branchini, Clare Burrage, Stefano Camera, C. Carbone, Luciano Casarini, Mark Cropper, Claudia de Rham, J. P. Dietrich, C. Di Porto, Ruth Durrer, A. Ealet, Pedro G. Ferreira, F. Finelli⋆, J. García-Bellido, T. Giannantonio, L. Guzzo, Alan Heavens, Lavinia Heisenberg, Catherine Heymans, Henk Hoekstra, Lukas Hollenstein, Rory Holmes, Zhiqi Hwang, K. Jahnke, Thomas D. Kitching, Tomi S. Koivisto, M. Kunz, G. La Vacca, Eric V. Linder, M. March, Valerio Marra, C. J. A. P. Martins, Elisabetta Majerotto, K. Markovic, David J. E. Marsh, F. Marulli, Richard Massey, Y. Mellier, Francesco Montanari, David F. Mota, Nelson J. Nunes, Will J. Percival, V. Pettorino, Cristiano Porciani, Claudia Quercellini, Justin I. Read, Massimiliano Rinaldi, Domenico Sapone, Ignacy Sawicki, R. Scaramella, Constantinos Skordis, Fergus Simpson, Andy Taylor, Shaun A. Thomas, Roberto Trotta, Licia Verde, Filippo Vernizzi, Adrian Vollmer, Yun Wang, J. Weller, Tom Złośnik
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0157033

Pattern Recognition on Read Positioning in Next Generation Sequencing
Cited by: 0
Author(s): Boseon Byeon, Igor Kovalchuk
Software Mentions: 6
Published: over 8 years ago

10.1186/1471-2105-15-274

A feature selection method for classification within functional genomics experiments based on the proportional overlapping score
Cited by: 38
Author(s): Osama Mahmoud, Andrew Harrison, Aris Perperoglou, Asma Gul, Zardad Khan, Metodi V. Metodiev, Berthold Lausen
Software Mentions: 6
Published: about 10 years ago

10.1186/s13104-017-2540-x

The effect of mislabeled phenotypic status on the identification of mutation-carriers from SNP genotypes in dairy cattle
Cited by: 6
Author(s): Stefano Biffani, Hubert Pausch, Hermann Schwarzenbacher, Filippo Biscarini
Software Mentions: 6
Published: over 7 years ago

10.1038/s41598-020-74486-y

Personal identifiability of user tracking data during observation of 360-degree VR video
Cited by: 65
Author(s): Mark Roman Miller, Fernanda Herrera, Hanseul Jun, James A. Landay, Jeremy N. Bailenson
Software Mentions: 6
Published: about 4 years ago

10.1186/s12888-015-0685-5

Distinguishing bipolar and major depressive disorders by brain structural morphometry: a pilot study
Cited by: 66
Author(s): Gabriel Pui Cheong Fung, Yi Deng, Qing Zhao, Zhi Li, Miao Qu, Li Ke, Yonghu Zeng, Jin Zhou, Yantao Ma, Xin Yu, Zhiren Wang, David Shum, Raymond C.K. Chan
Software Mentions: 5
Published: almost 9 years ago

10.1186/s12859-019-3163-0

Predictive modelling using pathway scores: robustness and significance of pathway collections
Cited by: 16
Author(s): Marcelo P. Segura-Lepe, Hector C. Keun, Timothy M. D. Ebbels
Software Mentions: 5
Published: about 5 years ago

10.1186/1471-2164-11-348

Genome-wide identification of new Wnt/β-catenin target genes in the human genome using CART method
Cited by: 48
Author(s): Christian Hödar, Rodrigo Assar, Marcela Colombres, Andrés Aravena, Leonardo Pavéz, Maurício González, Servet Martı́nez, Nibaldo C. Inestrosa, Alejandro Maass
Software Mentions: 4
Published: almost 15 years ago

10.1186/s12874-018-0644-1

Machine learning methodologies versus cardiovascular risk scores, in predicting disease risk
Cited by: 58
Author(s): Alexandros C. Dimopoulos, Μάρα Νικολαϊδου, Francisco Félix Caballero, Worrawat Engchuan, Albert Sánchez-Niubò, Holger Arndt, José Luís Ayuso-Mateos, Josep María Haro, Somnath Chatterji, Ekavi Georgousopoulou, Christos Pitsavos, Demosthenes B. Panagiotakos
Software Mentions: 4
Published: almost 6 years ago

10.1371/journal.pone.0006416

SlimPLS: A Method for Feature Selection in Gene Expression-Based Disease Classification
Cited by: 44
Author(s): Michael Gutkin, Ron Shamir, Gideon Dror
Software Mentions: 3
Published: over 15 years ago

10.1098/rsos.191438

Automated analysis of scanning electron microscopic images for assessment of hair surface damage
Cited by: 5
Author(s): Fanny Chu, Deon S. Anex, A. Daniel Jones, Bradley R. Hart
Software Mentions: 3
Published: almost 5 years ago

10.1186/1471-2164-7-51

Comparison of the latest commercial short and long oligonucleotide microarray technologies
Cited by: 49
Author(s): Aurélien de Reyniès, Daniela Géromin, Jean‐Michel Cayuela, Fabien Petel, Philippe Dessen, François Sigaux, David S. Rickman
Software Mentions: 3
Published: over 18 years ago

10.1186/s12864-015-1888-3

Putative synaptic genes defined from a Drosophila whole body developmental transcriptome by a machine learning approach
Cited by: 16
Author(s): Flavio Pazos Obregón, Cecilia Papalardo, Sebastián Castro, Gustavo Guerberoff, Rafael Cantera
Software Mentions: 3
Published: about 9 years ago

10.1002/ece3.4711

Quantitative acoustic differentiation of cryptic species illustrated with King and Clapper rails
Cited by: 7
Author(s): Lydia L. Stiffler, Katie M. Schroeder, James T. Anderson, Susan B. McRae, Todd E. Katzner
Software Mentions: 2
Published: almost 6 years ago

10.3390/s16071010

Robust Behavior Recognition in Intelligent Surveillance Environments
Cited by: 18
Author(s): Ganbayar Batchuluun, Yeong Gon Kim, Jong Hyun Kim, Hyung Gil Hong, Kang Ryoung Park
Software Mentions: 2
Published: over 8 years ago

10.1186/s12864-016-2921-x

Elucidating tissue specific genes using the Benford distribution
Cited by: 5
Author(s): Deepak Karthik, Gil Stelzer, Sivan Gershanov, Danny Baranes, Mali Salmon‐Divon
Software Mentions: 2
Published: about 8 years ago

Ecosyste.ms: Papers

Projects: cran: class

Papers Mentioning class 34