Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: nlme

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/nlme

Linear and Nonlinear Mixed Effects Models
147 versions
Latest release: over 1 year ago
431 dependent packages
137,096 downloads last month

Papers Mentioning nlme 3,265

10.1186/1471-2156-15-81
Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrations
Cited by: 16
Author(s): Robert B. Scharpf, Lynn Mireles, Qiong Yang, Anna Köttgen, Ingo Ruczinski, Katalin Suszták, Eitan Halper-Stromberg, Adrienne Tin, Stephen Cristiano, Aravinda Chakravarti, Eric Boerwinkle, Caroline S. Fox, Josef Coresh, W. H. Linda Kao
Software Mentions: 56
Published: almost 11 years ago
10.1371/journal.pcbi.1006242
Phylogeny-corrected identification of microbial gene families relevant to human gut colonization
Cited by: 29
Author(s): Patrick H. Bradley, Stephen Nayfach, Katherine S. Pollard
Software Mentions: 27
Published: over 6 years ago
10.3389/fmicb.2018.01474
Distinct Oceanic Microbiomes From Viruses to Protists Located Near the Antarctic Circumpolar Current
Cited by: 24
Author(s): Flavia Flaviani, Declan C. Schroeder, Karen Lebret, Cecilia Balestreri, Andrea Highfield, Joanna L. Schroeder, Sally Thorpe, Karen Moore, Konrad Pasckiewicz, Maya C. Pfaff, Edward P. Rybicki
Software Mentions: 27
Published: over 6 years ago
10.3390/ani9070417
Talking to Dogs: Companion Animal-Directed Speech in a Stress Test
Cited by: 9
Author(s): Raffaela Lesch, Kurt Kotrschal, Iris Schöberl, Andrea Beetz, Judith Solomon, W. Tecumseh Fitch
Software Mentions: 25
Published: over 5 years ago
10.1080/19490976.2021.1940792
Antibiotic-driven intestinal dysbiosis in pediatric short bowel syndrome is associated with persistently altered microbiome functions and gut-derived bloodstream infections
Cited by: 13
Author(s): Robert Thänert, Anna Thänert, Jocelyn Ou, Adam Bajinting, Carey Ann D. Burnham, Holly J. Engelstad, Maria E. Tecos, I. Malick Ndao, Carla Hall-Moore, Colleen Rouggly-Nickless, Mike A. Carl, Deborah C. Rubin, Nicholas O. Davidson, Phillip I. Tarr, Barbara B. Warner, Gautam Dantas, Brad W. Warner
Software Mentions: 22
Published: almost 4 years ago
10.1371/journal.pone.0146021
Dose-Response Analysis Using R
Cited by: 2,013
Author(s): Christian Ritz, Florent Baty, J. C. Streibig, Daniel Gerhard
Software Mentions: 20
Published: almost 9 years ago
10.1007/s00122-020-03716-8
Linear models for diallel crosses: a review with R functions
Cited by: 11
Author(s): Andrea Onofri, Niccolò Terzaroli, Luigi Russi
Software Mentions: 19
Published: about 4 years ago
10.3390/v12101142
A Diverse Virome of Leafroll-Infected Grapevine Unveiled by dsRNA Sequencing
Cited by: 24
Author(s): Mamadou L. Fall, De-Xiang Xu, Pierre Lemoyne, Issam Moussa, Carole Beaulieu, Odile Carisse
Software Mentions: 19
Published: about 4 years ago
10.1371/journal.pone.0244384
Metropolitan age-specific mortality trends at borough and neighborhood level: The case of Mexico City
Cited by: 2
Author(s): Karol Baca-López, Cristóbal Fresno, Jesús Espinal-Enríquez, Miriam V. Flores-Merino, Miguel A. Camacho-López, Enrique Hernández‐Lemus
Software Mentions: 18
Published: almost 4 years ago
10.7717/peerj.9539
The importance of open science for biological assessment of aquatic environments
Cited by: 15
Author(s): Marcus W. Beck, Casey C. O’Hara, Julia S. Stewart Lowndes, Raphael D. Mazor, Susanna Theroux, David J. Gillett, Belize Lane, Gregory Gearheart
Software Mentions: 17
Published: over 4 years ago
10.1038/sdata.2018.179
Computational workflow to study the seasonal variation of secondary metabolites in nine different bryophytes
Cited by: 13
Author(s): Kristian Peters, Karin Gorzolka, Helge Bruelheide, Steffen Neumann
Software Mentions: 17
Published: about 6 years ago
10.1371/journal.pone.0200653
Cryopreservation of human mucosal tissues
Cited by: 13
Author(s): Sean M. Hughes, April L. Ferre, Sarah E Yandura, Cory Shetler, Chris A. R. Baker, Fernanda Calienes, Claire Levy, Rena D. Astronomo, Zhiquan Shu, Gretchen M. Lentz, Michael Fialkow, Anna C. Kirby, M. Juliana McElrath, Elizabeth Sinclair, Lisa C. Rohan, Peter L. Anderson, Barbara L. Shacklett, Charlene S. Dezzutti, Dayong Gao, Florian Hladik
Software Mentions: 17
Published: over 6 years ago
10.1002/ece3.4361
Seasonal variation of secondary metabolites in nine different bryophytes
Cited by: 28
Author(s): Kristian Peters, Karin Gorzolka, Helge Bruelheide, Steffen Neumann
Software Mentions: 16
Published: over 6 years ago
10.3389/fmicb.2019.00240
Changes in Trophic Groups of Protists With Conversion of Rainforest Into Rubber and Oil Palm Plantations
Cited by: 38
Author(s): Garvin Schulz, Dominik Schneider, Nicole Brinkmann, Nur Edy, Rolf Daniel, Andrea Polle, Stefan Scheu, Valentyna Krashevska
Software Mentions: 16
Published: almost 6 years ago
10.1038/s41598-020-63428-3
No evidence of spontaneous preference for slowly moving objects in visually naïve chicks
Cited by: 7
Author(s): Bastien S. Lemaire
Software Mentions: 15
Published: over 4 years ago
10.7717/peerj.6876
Hierarchical generalized additive models in ecology: an introduction with mgcv
Cited by: 443
Author(s): Eric J. Pedersen, David L. Miller, Gavin L. Simpson, Noam Ross
Software Mentions: 15
Published: over 5 years ago
10.1186/s12885-021-08598-7
Cannabinoid exposure as a major driver of pediatric acute lymphoid Leukaemia rates across the USA: combined geospatial, multiple imputation and causal inference study
Cited by: 24
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 15
Published: about 3 years ago
10.1186/s42523-020-00027-7
Domesticated equine species and their derived hybrids differ in their fecal microbiota
Cited by: 18
Author(s): Joan E. Edwards, A. Schennink, Faith Burden, Stuart A. Long, D.A. van Doorn, W.F. Pellikaan, J. Dijkstra, Edoardo Saccenti, Hauke Smidt
Software Mentions: 14
Published: over 4 years ago
10.3758/s13420-020-00446-1
Response of male and female domestic chicks to change in the number (quantity) of imprinting objects
Cited by: 5
Author(s): Bastien S. Lemaire, Rosa Rugani, Lucia Regolin, Giorgio Vallortígara
Software Mentions: 14
Published: about 4 years ago
10.3390/cells10030620
Measuring Pre- and Post-Copulatory Sexual Selection and Their Interaction in Socially Monogamous Species with Extra-Pair Paternity
Cited by: 6
Author(s): Emily R. A. Cramer
Software Mentions: 14
Published: over 3 years ago
10.1093/iob/obab004
Patterns of Body Shape Diversity and Evolution in Intertidal and Subtidal Lineages of Combtooth Blennies (Blenniidae)
Cited by: 4
Author(s): Joshua Egan, Thaddaeus John Buser, Michael D. Burns, Andrew M. Simons, Peter J. Hundt
Software Mentions: 14
Published: almost 4 years ago
10.1038/s41598-020-59849-9
Response of the human gut and saliva microbiome to urbanization in Cameroon
Cited by: 25
Author(s): Ana Lokmer, Sophie Aflalo, Norbert Amougou, Sophie Lafosse, Alain Froment, Francis Ekwin Tabe, Mathilde Poyet, Mathieu Groussin, Rihlat Saïd-Mohamed, Laure Ségurel
Software Mentions: 14
Published: almost 5 years ago
10.3389/fmicb.2019.01775
Temporal Variation in the Microbiome of Acropora Coral Species Does Not Reflect Seasonality
Cited by: 23
Author(s): Hannah E. Epstein, Hillary A. Smith, Neal E. Cantin, Véronique J. L. Mocellin, Gergely Torda, Madeleine J. H. van Oppen
Software Mentions: 14
Published: over 5 years ago
10.1002/ece3.5645
Testing adaptive hypotheses on the evolution of larval life history in acorn and stalked barnacles
Cited by: 11
Author(s): Christine Ewers‐Saucedo, Paula Pappalardo
Software Mentions: 13
Published: about 5 years ago
10.1371/journal.pone.0206563
Nitrogen addition pulse has minimal effect in big sagebrush (Artemisia tridentata) communities on the Pinedale Anticline, Wyoming (USA)
Cited by: 1
Author(s): Christopher W. Beltz, Megan L. Mobley, Ingrid C. Burke
Software Mentions: 13
Published: over 5 years ago
10.1126/sciadv.abg6070
Enhancing the heat tolerance of reef-building corals to future warming
Cited by: 36
Author(s): Emily J. Howells, David Abrego, Yi Jin Liew, John A. Burt, Eli Meyer, Manuel Aranda
Software Mentions: 13
Published: over 3 years ago
10.3389/fpls.2020.01206
Similar Arbuscular Mycorrhizal Fungal Communities in 31 Durum Wheat Cultivars (Triticum turgidum L. var. durum) Under Field Conditions in Eastern Canada
Cited by: 16
Author(s): Franck Stefani, Sarah Dupont, Mario Laterrière, Ron Knox, Yuefeng Ruan, Chantal Hamel, Mohamed Hijri
Software Mentions: 13
Published: over 4 years ago
10.1038/s42003-021-01887-8
The impact of locomotion on the brain evolution of squirrels and close relatives
Cited by: 23
Author(s): Ornella Bertrand, Hans P. Püschel, Julia A. Schwab, Mary Silcox, Stephen L. Brusatte
Software Mentions: 13
Published: over 3 years ago
10.1002/ece3.6520
Growth and survival of the superorganism: Ant colony macronutrient intake and investment
Cited by: 3
Author(s): Yeisson Gutiérrez, Tung Phung, Harald Mumma, Arden Ambrose‐Winters, Christoph Scherber, Chris R. Smith
Software Mentions: 13
Published: over 4 years ago
10.1186/s12939-016-0350-8
Are health care inequalities unfair? A study on public attitudes in 23 countries
Cited by: 25
Author(s): Olaf von dem Knesebeck, Nico Vonneilich, Tae Jun Kim
Software Mentions: 13
Published: over 8 years ago
10.1111/mec.15422
Ecological and evolutionary drivers of haemoplasma infection and bacterial genotype sharing in a Neotropical bat community
Cited by: 21
Author(s): Daniel J. Becker, Kelly A. Speer, Alexis M. Brown, M. Brock Fenton, Alex D. Washburne, Sonia Altizer, Daniel G. Streicker, Raina K. Plowright, Vladimir E. Chizhikov, Nancy B. Simmons, Dmitriy V. Volokhov
Software Mentions: 13
Published: over 4 years ago
10.12688/f1000research.7082.3
EvolQG - An R package for evolutionary quantitative genetics
Cited by: 31
Author(s): Diogo Melo, Guilherme Garcia, Alex Hubbe, Ana Paula A. Assis, Gabriel Marroig
Software Mentions: 13
Published: about 8 years ago
10.1186/s42523-020-0023-1
Multi-kingdom characterization of the core equine fecal microbiota based on multiple equine (sub)species
Cited by: 31
Author(s): Joan E. Edwards, Sudarshan A. Shetty, Pim van den Berg, Faith Burden, D.A. van Doorn, W.F. Pellikaan, J. Dijkstra, Hauke Smidt
Software Mentions: 13
Published: almost 5 years ago
10.1186/s12862-016-0661-9
Breeding system, shell size and age at sexual maturity affect sperm length in stylommatophoran gastropods
Cited by: 4
Author(s): Dénes Schmera, Julia Pizá, Ellen Reinartz, Sylvain Ursenbacher, Bruno Baur
Software Mentions: 12
Published: over 8 years ago
10.1371/journal.pone.0156293
Cryopreservation of Human Mucosal Leukocytes
Cited by: 14
Author(s): Sean M. Hughes, Zhiquan Shu, Claire Levy, April L. Ferre, Heather Hartig, Cifeng Fang, Gretchen M. Lentz, Michael Fialkow, Anna C. Kirby, Kristina M. Adams Waldorf, Ronald S. Veazey, Anja Germann, Hagen von Briesen, M. Juliana McElrath, Charlene S. Dezzutti, Elizabeth Sinclair, Chris A. R. Baker, Barbara L. Shacklett, Dayong Gao, Florian Hladik
Software Mentions: 12
Published: over 8 years ago
10.1093/conphys/coaa047
Changes in physiology and microbial diversity in larval ornate chorus frogs are associated with habitat quality
Cited by: 9
Author(s): Cory B. Goff, Susan C. Walls, David Rodríguez, Caitlin R. Gabor
Software Mentions: 12
Published: almost 5 years ago
10.1186/s12859-020-03803-z
NBZIMM: negative binomial and zero-inflated mixed models, with application to microbiome/metagenomics data analysis
Cited by: 38
Author(s): Xinyan Zhang, Nengjun Yi
Software Mentions: 12
Published: about 4 years ago
10.3389/fvets.2021.699332
Volunteers' Demographics That Affect the Human-Dog Interaction During Walks in a Shelter
Cited by: 2
Author(s): Hao-Yu Shih, Mandy Paterson, Nancy A. Pachana, Clive J. C. Phillips
Software Mentions: 12
Published: about 3 years ago
10.3390/ani11010026
Do Canine Behavioural Assessments and Characteristics Predict the Human-Dog Interaction When Walking on a Leash in a Shelter Setting?
Cited by: 4
Author(s): Hao-Yu Shih, Mandy Paterson, Fillipe Georgiou, Clive J. C. Phillips
Software Mentions: 12
Published: almost 4 years ago
10.3389/fnbeh.2021.675994
Resurgence of an Inborn Attraction for Animate Objects via Thyroid Hormone T3
Cited by: 8
Author(s): Elena Lorenzi, Bastien S. Lemaire, Elisabetta Versace, Toshiya Matsushima, Giorgio Vallortígara
Software Mentions: 12
Published: over 3 years ago
10.1016/j.immuni.2021.05.010
Longitudinal analysis reveals that delayed bystander CD8+ T cell activation and early immune pathology distinguish severe COVID-19 from mild disease
Cited by: 188
Author(s): Laura Bergamaschi, Federica Mescia, Lorinda Turner, Aimee L. Hanson, Prasanti Kotagiri, Benjamin J. Dunmore, Hélène Ruffieux, Aloka De, Oisín Huhn, Michael D. Morgan, Pehuén Pereyra Gerber, Mark R. Wills, Stephen Baker, Fernando J Calero-Nieto, Rainer Döffinger, Gordon Dougan, Anne Elmer, Ian Goodfellow, Ravindra Gupta, Myra Hosmillo, Kelvin Hunter, Nathalie Kingston, Paul J. Lehner, Nicholas J Matheson, Jeremy K. Nicholson, A. M. Petrunkina, Sylvia Richardson, Caroline Saunders, James Thaventhiran, Erik J. M. Toonen, Michael P. Weekes, Berthold Göttgens, Mark Toshner, Christoph Hess, John R. Bradley, Paul Lyons, Kenneth Smith
Software Mentions: 12
Published: over 3 years ago
10.3389/fpsyg.2021.619715
Two Ends of the Leash: Relations Between Personality of Shelter Volunteers and On-leash Walking Behavior With Shelter Dogs
Cited by: 2
Author(s): Hao-Yu Shih, Mandy Paterson, Fillipe Georgiou, Leander K. Mitchell, Nancy A. Pachana, Clive J. C. Phillips
Software Mentions: 12
Published: over 3 years ago
10.7717/peerj.9850
lcc: an R package to estimate the concordance correlation, Pearson correlation and accuracy over time
Cited by: 5
Author(s): Thiago Pires Oliveira, Rafael de Andrade Moral, Sílvio Sandoval Zocchi, Clarice Garcia Borges Demétrio, John Hinde
Software Mentions: 12
Published: about 4 years ago
10.3390/ani10101894
Who Is Pulling the Leash? Effects of Human Gender and Dog Sex on Human–Dog Dyads When Walking On-Leash
Cited by: 10
Author(s): Hao-Yu Shih, Mandy Paterson, Fillipe Georgiou, Nancy A. Pachana, Clive J. C. Phillips
Software Mentions: 12
Published: about 4 years ago
10.1371/journal.pone.0202824
Allometry predicts trabecular bone structural properties in the carnivoran jaw joint
Cited by: 6
Author(s): Matthew Wysocki, Z. Jack Tseng
Software Mentions: 12
Published: about 6 years ago
10.1002/ece3.8020
Functional groups in piscivorous fishes
Cited by: 8
Author(s): Michalis Mihalitsis, David R. Bellwood
Software Mentions: 12
Published: about 3 years ago
10.3389/fmicb.2018.02312
Experimental Evidence of Functional Group-Dependent Effects of Tree Diversity on Soil Fungi in Subtropical Forests
Cited by: 26
Author(s): Christina Weißbecker, Tesfaye Wubet, Guillaume Lentendu, Peter Kühn, Thomas Scholten, Helge Bruelheide, François Buscot
Software Mentions: 12
Published: about 6 years ago
10.1038/s41598-021-86989-3
Stability and individual variability of social attachment in imprinting
Cited by: 15
Author(s): Bastien S. Lemaire, Daniele Rucco, Mathilde Josserand, Giorgio Vallortígara, Elisabetta Versace
Software Mentions: 12
Published: over 3 years ago
10.1038/s41598-021-92406-6
Plasma lipidomic analysis shows a disease progression signature in mdx mice
Cited by: 3
Author(s): Roula Tsonaka, Alexandre Seyer, Annemieke Aartsma‐Rus, Pietro Spitali
Software Mentions: 11
Published: over 3 years ago
10.3389/fmicb.2019.02904
Fungal Traits Important for Soil Aggregation
Cited by: 68
Author(s): Anika Lehmann, Weiguo Zheng, Masahiro Ryo, Katharina Soutschek, Julien Roy, Rebecca Rongstock, Stefanie Maaß, Matthias C. Rillig
Software Mentions: 11
Published: almost 5 years ago
10.1371/journal.pone.0256339
Sex-specific spatial use of the winter foraging areas by Magellanic penguins and assessment of potential conflicts with fisheries during winter dispersal
Cited by: 6
Author(s): Samanta Dodino, Nicolás A. Lois, Luciana Riccialdelli, Michael J. Polito, Klemens Pütz, Andrea Raya Rey
Software Mentions: 11
Published: over 3 years ago
10.1038/s41598-020-59494-2
Unstable crop yields reveal opportunities for site-specific adaptations to climate variability
Cited by: 30
Author(s): Rafael A. Martinez-Feria, Bruno Basso
Software Mentions: 11
Published: almost 5 years ago
10.1371/journal.pone.0242331
Ocean warming affected faunal dynamics of benthic invertebrate assemblages across the Toarcian Oceanic Anoxic Event in the Iberian Basin (Spain)
Cited by: 4
Author(s): Veronica Piazza, Clemens V. Ullmann, Martin Aberhan
Software Mentions: 11
Published: almost 4 years ago
10.7554/eLife.62147
Role of matrix metalloproteinase-9 in neurodevelopmental deficits and experience-dependent plasticity in Xenopus laevis
Cited by: 6
Author(s): Sayali V Gore, Eric J. James, Lin-Chien Huang, Jenn J Park, Andrea Berghella, Adrian C. Thompson, Hollis T. Cline, Carlos D. Aizenman
Software Mentions: 11
Published: over 3 years ago
10.1371/journal.pone.0234503
Nest boxes buffer the effects of climate on breeding performance in an African urban raptor
Cited by: 17
Author(s): Petra Sumasgutner, Andrew R. Jenkins, Arjun Amar, Res Altwegg
Software Mentions: 11
Published: over 4 years ago
10.1186/s12885-021-07924-3
A geospatiotemporal and causal inference epidemiological exploration of substance and cannabinoid exposure as drivers of rising US pediatric cancer rates
Cited by: 26
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 11
Published: over 3 years ago
10.1111/mec.13636
Escape from the cryptic species trap: lichen evolution on both sides of a cyanobacterial acquisition event
Cited by: 34
Author(s): Kevin Schneider, Philipp Resl, Toby Spribille
Software Mentions: 11
Published: over 8 years ago
10.1371/journal.pgen.1008748
Polygenic adaptation of rosette growth in Arabidopsis thaliana
Cited by: 19
Author(s): Benedict Wieters, Kim A. Steige, Fei He, Evan Koch, Sebastián E. Ramos-Onsins, Hongya Gu, Ya‐Long Guo, Shamil Sunyaev, Juliette de Meaux
Software Mentions: 11
Published: almost 4 years ago
10.3389/fpsyg.2018.02251
Disabled or Cyborg? How Bionics Affect Stereotypes Toward People With Physical Disabilities
Cited by: 28
Author(s): Bertolt Meyer, Frank Asbrock
Software Mentions: 11
Published: about 6 years ago
10.3389/fpsyg.2021.545268
Beholden: The Emotional Effects of Having Eye Contact While Breaking Social Norms
Cited by: 2
Author(s): Ranjit K. Singh, Birgit J. Voggeser, Anja S. Göritz
Software Mentions: 11
Published: over 3 years ago
10.7717/peerj.9494
Quantifying local ecological knowledge to model historical abundance of long-lived, heavily-exploited fauna
Cited by: 15
Author(s): Michelle María Early Capistrán, Elena Solana‐Arellano, F. Alberto Abreu‐Grobois, Nemer E. Narchi, Gerardo Garibay‐Melo, Jeffrey A. Seminoff, Volker Koch, Andrea Sáenz–Arroyo
Software Mentions: 11
Published: over 4 years ago
10.3390/ijerph17197153
Association between Maternal Postpartum Depression, Stress, Optimism, and Breastfeeding Pattern in the First Six Months
Cited by: 33
Author(s): Andrea Gila-Díaz, Gloria Herranz Carrillo, Ángel L. López de Pablo, Silvia M. Arribas, David Ramiro-Cortijo
Software Mentions: 11
Published: about 4 years ago
10.1371/journal.pone.0204484
Using museum specimens to estimate broad-scale species richness: Exploring the performance of individual-based and spatially explicit rarefaction
Cited by: 0
Author(s): Oyomoare L. Osazuwa‐Peters, W D Stevens, Iván Jiménez
Software Mentions: 10
Published: about 6 years ago
10.1186/1472-6785-10-12
The world's richest tadpole communities show functional redundancy and low functional diversity: ecological data on Madagascar's stream-dwelling amphibian larvae
Cited by: 54
Author(s): Axel Strauß, Erik Reeve, Roger-Daniel Randrianiaina, Miguel Vences, Julian Glos
Software Mentions: 10
Published: almost 15 years ago
10.3390/md16100379
Fatty Acid Composition and Fatty Acid Associated Gene-Expression in Gilthead Sea Bream (Sparus aurata) are Affected by Low-Fish Oil Diets, Dietary Resveratrol, and Holding Temperature
Cited by: 18
Author(s): Claudia Torno, Stefanie Staats, Stéphanie Céline Michl, Sonia de Pascual‐Teresa, Marisol Izquierdo, Gerald Rimbach, Carsten Schulz
Software Mentions: 10
Published: about 6 years ago
10.1186/s12711-021-00614-5
Influence of genetics and the pre-vaccination blood transcriptome on the variability of antibody levels after vaccination against Mycoplasma hyopneumoniae in pigs
Cited by: 8
Author(s): Fany Blanc, Tatiana Maroilley, Manuel Revilla, Gaëtan Lemonnier, Jean Jacques Leplat, Yvon Billon, Laure Ravon, Olivier Bouchez, Jean Pierre Bidanel, Bertrand Bed’Hom, Marie-Hélène Pinard-van Der Laan, Jordi Estellé, Claire Rogel‐Gaillard
Software Mentions: 10
Published: over 3 years ago
10.1038/s42003-021-02137-7
The lexicon of antimicrobial peptides: a complete set of arginine and tryptophan sequences
Cited by: 33
Author(s): Sam Clark, Thomas A. Jowitt, Lynda K. Harris, Christopher G. Knight, Curtis B. Dobson
Software Mentions: 10
Published: over 3 years ago
10.1186/s40360-021-00505-x
Causal inference multiple imputation investigation of the impact of cannabinoids and other substances on ethnic differentials in US testicular cancer incidence
Cited by: 26
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 10
Published: over 3 years ago
10.1186/s12859-016-0997-6
Unaccounted uncertainty from qPCR efficiency estimates entails uncontrolled false positive rates
Cited by: 5
Author(s): Anders Ellern Bilgrau, Steffen Falgreen, Anders Petersen, Malene Krag Kjeldsen, Julie Støve Bødker, Hans Erik Johnsen, Karen Dybkær, Martin Bøgsted
Software Mentions: 10
Published: over 8 years ago
10.3389/fpsyg.2018.00513
Modeling Linguistic Variables With Regression Models: Addressing Non-Gaussian Distributions, Non-independent Observations, and Non-linear Predictors With Random Effects and Generalized Additive Models for Location, Scale, and Shape
Cited by: 20
Author(s): Christophe Coupé
Software Mentions: 10
Published: over 6 years ago
10.1038/tp.2016.119
Transcriptomic signatures of neuronal differentiation and their association with risk genes for autism spectrum and related neuropsychiatric disorders
Cited by: 23
Author(s): Andreas G. Chiocchetti, Denise Haslinger, Jason L. Stein, Luis de la Torre-Ubieta, Enrico Cocchi, Thomas Rothämel, Silvia Lindlar, Regina Waltes, Simone Fulda, Daniel H. Geschwind, Christine M. Freitag
Software Mentions: 10
Published: over 8 years ago
10.1186/s12874-018-0502-1
joineRML: a joint model and software package for time-to-event and multivariate longitudinal outcomes
Cited by: 42
Author(s): Graeme L. Hickey, Pete Philipson, Andrea Jorgensen, Ruwanthi Kolamunnage‐Dona
Software Mentions: 10
Published: over 6 years ago
10.7717/peerj.8027
Limited initial impacts of biomass harvesting on composition of wood-inhabiting fungi within residual stumps
Cited by: 0
Author(s): Cédric Boué, Tonia DeBellis, Lisa Venier, Timothy T. Work, Steven W. Kembel
Software Mentions: 10
Published: almost 5 years ago
10.1002/ece3.4550
Size does matter: Parallel evolution of adaptive thermal tolerance and body size facilitates adaptation to climate change in domestic cattle
Cited by: 20
Author(s): Muhammed Elayadeth-Meethal, Aravindakshan Thazhathu Veettil, Shane K. Maloney, N. J. Hawkins, Tom Misselbrook, Veerasamy Sejian, M. Jordana Rivero, Michael R. F. Lee
Software Mentions: 10
Published: about 6 years ago
10.1002/sim.7582
Dynamic prediction in functional concurrent regression with an application to child growth
Cited by: 13
Author(s): Andrew Leroux, Luo Xiao, Ciprian M. Crainiceanu, William Checkley
Software Mentions: 10
Published: almost 7 years ago
10.1371/journal.pone.0224750
Gene expression microarray public dataset reanalysis in chronic obstructive pulmonary disease
Cited by: 3
Author(s): Lavida R. K. Rogers, Madison Verlinde, George I. Mias
Software Mentions: 10
Published: about 5 years ago
10.3389/fmicb.2020.00917
Changes in Faecal Microbiota Profiles Associated With Performance and Birthweight of Piglets
Cited by: 23
Author(s): Clare H. Gaukroger, Christopher J. Stewart, Sandra Edwards, John Walshaw, Ian Adams, Ι. Kyriazakis
Software Mentions: 10
Published: over 4 years ago
10.1371/journal.pone.0216611
Combined effects of nutritional, biochemical and environmental stimuli on growth performance and fatty acid composition of gilthead sea bream (Sparus aurata)
Cited by: 3
Author(s): Claudia Torno, Stefanie Staats, Anna Fickler, Sonia de Pascual‐Teresa, M.S. Izquierdo, Gerald Rimbach, Carsten Schulz
Software Mentions: 10
Published: over 5 years ago
10.7554/eLife.66036
A new Heterodontosaurus specimen elucidates the unique ventilatory macroevolution of ornithischian dinosaurs
Cited by: 8
Author(s): Viktor J. Radermacher, Vincent Fernández, Emma R. Schachner, Richard J. Butler, Emese M. Bordy, Michael Naylor Hudgins, William J. De Klerk, Kimberley E. J. Chapelle, Jonah N. Choiniere
Software Mentions: 10
Published: over 3 years ago
10.1038/s41598-020-64095-0
Snapshots of human anatomy, locomotion, and behavior from Late Pleistocene footprints at Engare Sero, Tanzania
Cited by: 17
Author(s): Kevin G. Hatala, William E. H. Harcourt‐Smith, Adam D. Gordon, Brian W. Zimmer, Brian G. Richmond, Briana Pobiner, David J. Green, Adam Metallo, Vince Rossi, Cynthia M. Liutkus-Pierce
Software Mentions: 10
Published: over 4 years ago
10.1098/rspb.2021.0853
Adaptations to light contribute to the ecological niches and evolution of the terrestrial avifauna
Cited by: 11
Author(s): Ian J. Ausprey
Software Mentions: 10
Published: over 3 years ago
10.7554/eLife.28811
Sperm competition risk drives rapid ejaculate adjustments mediated by seminal fluid
Cited by: 32
Author(s): Michael Bartlett, Tammy E. Steeves, Neil J. Gemmell, Patrice Rosengrave
Software Mentions: 9
Published: about 7 years ago
10.1038/s41598-020-65087-w
Expression of genes of the Pho regulon is altered in Streptomyces coelicolor
Cited by: 22
Author(s): Aarón Millán-Oropeza, Céline Henry, Clara Lejeune, Michelle David, Marie‐Joëlle Virolle
Software Mentions: 9
Published: over 4 years ago
10.1007/s00702-021-02350-y
The impact of maternal care and blood glucose availability on the cortisol stress response in fasted women
Cited by: 6
Author(s): Ulrike U. Bentele, Maria Meier, Annika Benz, Bernadette Denk, Stephanie J. Dimitroff, Jens C. Pruessner, Eva Unternäehrer
Software Mentions: 9
Published: over 3 years ago
10.1371/journal.pone.0071476
Sleepless in Town – Drivers of the Temporal Shift in Dawn Song in Urban European Blackbirds
Cited by: 90
Author(s): Anja Nordt, Reinhard Klenke
Software Mentions: 9
Published: over 11 years ago
10.1371/journal.pone.0235930
Neither per, nor tim1, nor cry2 alone are essential components of the molecular circadian clockwork in the Madeira cockroach
Cited by: 3
Author(s): Achim Werckenthin, Jannik Huber, Thordis Arnold, Susanne Koziarek, Marcus J. A. Plath, Jenny Aino Plath, Olaf Stursberg, Hanspeter Herzel, Monika Stengl
Software Mentions: 9
Published: over 4 years ago
10.1098/rspb.2018.0270
Evolutionary adaptation to aquatic lifestyle in extinct sloths can lead to systemic alteration of bone structure
Cited by: 20
Author(s): Eli Amson, Guillaume Billet, Christian de Muizon
Software Mentions: 9
Published: over 6 years ago
10.1002/ece3.6190
Friend or foe? A parasitic wasp shifts the cost/benefit ratio in a nursery pollination system impacting plant fitness
Cited by: 2
Author(s): Carmen Villacañas de Castro, Thomas S. Hoffmeister
Software Mentions: 9
Published: over 4 years ago
10.1371/journal.pone.0208126
Modeling the spatial and seasonal distribution of offshore recreational vessels in the southeast United States
Cited by: 5
Author(s): Nancy Montes, Robert Swett, Robert Ahrens
Software Mentions: 9
Published: almost 6 years ago
10.1371/journal.ppat.1009459
Specialized 16SrX phytoplasmas induce diverse morphological and physiological changes in their respective fruit crops
Cited by: 9
Author(s): Jannicke Gallinger, Kerstin Zikeli, Matthias R. Zimmermann, Louisa Görg, Axel Mithöfer, Michael Reichelt, E. Seemüller, Jürgen Gross, Alexandra C. U. Furch
Software Mentions: 9
Published: over 3 years ago
10.1186/s13071-017-2394-z
West Nile virus host-vector-pathogen interactions in a colonial raptor
Cited by: 6
Author(s): Zoltán Soltész, Károly Erdélyi, Tamás Bakonyi, Mónika Barna, Katalin Szentpáli-Gavallér, Szabolcs Solt, Éva Horváth, Péter Palatitz, László Kotymán, Ádám Dán, Lâszlö Papp, Andrea Harnos, Péter Fehérvári
Software Mentions: 9
Published: about 7 years ago
10.1371/journal.pone.0188564
Widespread local chronic stressors in Caribbean coastal habitats
Cited by: 10
Author(s): Iliana Chollett, Rachel Collin, Carolina Bastidas, Aldo Cróquer, Peter M. H. Gayle, Eric Jordán-Dahlgren, Karen Koltes, Hazel A. Oxenford, Alberto Rodríguez-Ramírez, Ernesto Weil, Jahson Berhane Alemu, David Bone, Kenneth C. Buchan, Marcia Creary Ford, Edgar Escalante‐Mancera, Jaime Garzón-Ferreira, Héctor M. Guzmán, Björn Kjerfve, Eduardo Klein, Croy McCoy, Arthur C. Potts, Francisco Ruiz-Rentería, Struan R. Smith, John Tschirky, Jorge Cortés
Software Mentions: 9
Published: almost 7 years ago
10.1186/s12983-016-0162-0
Evolution of body morphology and beak shape revealed by a morphometric analysis of 14 Paridae species
Cited by: 28
Author(s): Shimiao Shao, Quan Qing, Tianlong Cai, Gang Song, Yanhua Qu, Fumin Lei
Software Mentions: 9
Published: over 8 years ago
10.1186/1471-2407-14-130
Systematic analysis of 18F-FDG PET and metabolism, proliferation and hypoxia markers for classification of head and neck tumors
Cited by: 21
Author(s): Bianca A.W. Hoeben, Maud H.W. Starmans, Ralph T.H. Leijenaar, Ludwig Dubois, Albert J. van der Kogel, J.H.A.M. Kaanders, Paul C. Boutros, Johan Bussink
Software Mentions: 9
Published: over 10 years ago
10.1186/s12874-019-0666-3
A review of spline function procedures in R
Cited by: 250
Author(s): Aris Perperoglou, Willi Sauerbrei, Michal Abrahamowicz, Matthias Schmid
Software Mentions: 9
Published: over 5 years ago
10.1186/s40168-019-0743-1
Comparative analysis of amplicon and metagenomic sequencing methods reveals key features in the evolution of animal metaorganisms
Cited by: 128
Author(s): Philipp Rausch, Malte Rühlemann, Shauni Doms, Shauni Doms, Tal Dagan, Katja Dierking, Hanna Domin, Sebastian Fraune, Jakob von Frieling, Ute Hentschel, Femke Anouska Heinsen, Marc P. Höppner, Martin T. Jahn, Cornelia Jaspers, Kohar Annie B. Kissoyan, Daniela Langfeldt, Ateequr Rehman, Thorsten B.H. Reusch, Thomas Roeder, Ruth A. Schmitz, Hinrich Schulenburg, Ryszard Soluch, Felix Sommer, Eva H. Stukenbrock, Nancy Weiland‐Bräuer, Philip Rosenstiel, André Franke, Thomas C. G. Bosch, John F. Baines
Software Mentions: 9
Published: about 5 years ago
10.1371/journal.pone.0222547
Endothelial dysfunction and low-grade inflammation in the transition to renal replacement therapy
Cited by: 13
Author(s): April C.E. van Gennip, Natascha J. H. Broers, Karlien J. ter Meulen, Bernard Canaud, Maarten H. L. Christiaans, T. Cornelis, M. Gelens, Marc Hermans, Constantijn Konings, Jeroen B. van der Net, Frank M. van der Sande, Casper G. Schalkwijk, Frank Stifft, Joris J. J. M. Wirtz, Jeroen P. Kooman, Remy J H Martens
Software Mentions: 9
Published: about 5 years ago
10.1371/journal.pone.0172278
Combined bio-logging and stable isotopes reveal individual specialisations in a benthic coastal seabird, the Kerguelen shag
Cited by: 16
Author(s): Elodie C. M. Camprasse, Yves Cherel, John P. Y. Arnould, Andrew J. Hoskins, Charles‐André Bost
Software Mentions: 9
Published: over 7 years ago
10.1186/s12887-020-02431-z
Contemporary epidemiology of rising atrial septal defect trends across USA 1991–2016: a combined ecological geospatiotemporal and causal inferential study
Cited by: 28
Author(s): Albert Stuart Reece, Gary Kenneth Hulse
Software Mentions: 9
Published: almost 4 years ago
10.3389/fvets.2021.627894
Factors Affecting the Development of Bovine Respiratory Disease: A Cross-Sectional Study in Beef Steers Shipped From France to Italy
Cited by: 14
Author(s): Barbara Padalino, Francesco Cirone, Martina Zappaterra, Daniele Tullio, Gigliola Ficco, Antonio Giustino, Linda Amarachi Ndiana, Annamaria Pratelli
Software Mentions: 9
Published: over 3 years ago