Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12859-020-03803-z
https://doi.org/10.1186/s12859-020-03803-z
NBZIMM: negative binomial and zero-inflated mixed models, with application to microbiome/metagenomics data analysis
Cited by: 38
Author(s): Xinyan Zhang, Nengjun Yi
Published: about 4 years ago
Software Mentions 12
cran: GLMMadaptive
Generalized Linear Mixed Models using Adaptive Gaussian QuadraturePapers that mentioned: 14
cran: glmmTMB
Generalized Linear Mixed Models using Template Model BuilderPapers that mentioned: 373
cran: MASS
Support Functions and Datasets for Venables and Ripley's MASSPapers that mentioned: 2,353
cran: mgcv
Mixed GAM Computation Vehicle with Automatic Smoothness EstimationPapers that mentioned: 1,251
pypi: MetaPhlAn
MetaPhlAn is a computational tool for profiling the composition of microbial communities (Bacteria, Archaea and Eukaryotes) from metagenomic shotgun sequencing data (i.e. not 16S) with species-level. With the newly added StrainPhlAn module, it is now possible to perform accurate strain-level microbial profiling.Papers that mentioned: 306