pypi: glm | Projects | Ecosyste.ms: Papers

10.7717/peerj.6876

Hierarchical generalized additive models in ecology: an introduction with mgcv
Cited by: 443
Author(s): Eric J. Pedersen, David L. Miller, Gavin L. Simpson, Noam Ross
Software Mentions: 15
Published: over 5 years ago

10.1186/s12859-020-03803-z

NBZIMM: negative binomial and zero-inflated mixed models, with application to microbiome/metagenomics data analysis
Cited by: 38
Author(s): Xinyan Zhang, Nengjun Yi
Software Mentions: 12
Published: about 4 years ago

10.1186/s40560-021-00531-1

Development and validation of an online model to predict critical COVID-19 with immune-inflammatory parameters
Cited by: 7
Author(s): Yue Gao, Lingxi Chen, Jianhua Chi, Shaoqing Zeng, Xikang Feng, Huayi Li, Dan Liŭ, Xiang Feng, Siyuan Wang, Ya Wang, Rui Yu, Yuan Yuan, Sen Xu, Chunrui Li, Wei Zhang, Shuai Cheng Li, Qinglei Gao
Software Mentions: 12
Published: almost 4 years ago

10.1371/journal.pone.0244350

Knowledge, attitudes, and practices toward COVID-19 among university students in Japan and associated factors: An online cross-sectional survey
Cited by: 82
Author(s): Asuka Hatabu, Xinhua Mao, Yi Zhou, Norihito Kawashita, Zheng Wen, Masao Ueda, Tatsuya Takagi, Yinbao Tian
Software Mentions: 12
Published: almost 4 years ago

10.1186/s12859-018-2264-5

Random forest versus logistic regression: a large-scale benchmark experiment
Cited by: 396
Author(s): Raphäel Couronné, Philipp Probst, Anne‐Laure Boulesteix
Software Mentions: 11
Published: over 6 years ago

10.1186/s13059-019-1716-1

A practical guide to methods controlling false discoveries in computational biology
Cited by: 178
Author(s): Keegan Korthauer, Patrick K. Kimes, Claire Duvallet, Alejandro Reyes, Ayshwarya Subramanian, Mingxiang Teng, Chinmay Shukla, Eric J. Alm, Stephanie C. Hicks
Software Mentions: 11
Published: over 5 years ago

10.1371/journal.pone.0215142

Mathematical modeling for the prediction of cerebral white matter lesions based on clinical examination data
Cited by: 7
Author(s): Yuya Shinkawa, Takashi Yoshida, Yohei Onaka, Makoto Ichinose, Kazuo Ishii
Software Mentions: 10
Published: over 5 years ago

10.1038/srep43932

Implications of the cattle trade network in Cameroon for regional disease prevention and control
Cited by: 60
Author(s): Paolo Carlo Motta, Thibaud Porphyre, Ian Handel, Saidou M. Hamman, Victor Ngu Ngwa, Vincent N. Tanya, K. L. Morgan, Rob Christley, Barend M. deC. Bronsvoort
Software Mentions: 10
Published: over 7 years ago

10.7554/eLife.40757

Targets and genomic constraints of ectopic Dnmt3b expression
Cited by: 24
Author(s): Yingying Zhang, Jocelyn Charlton, Rahul Karnik, Isabel Beerman, Zachary D. Smith, Hongcang Gu, Patrick Boyle, Xiaoli Mi, Kendell Clement, Ramona Pop, Andreas Gnirke, Derrick J. Rossi, Alexander Meissner
Software Mentions: 9
Published: about 6 years ago

10.1098/rstb.2018.0335

Mosquito and primate ecology predict human risk of yellow fever virus spillover in Brazil
Cited by: 41
Author(s): Marissa L. Childs, Nicole Nova, Justine Colvin, Erin A. Mordecai
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0195060

Topographic effects on dispersal patterns of Phytophthora cinnamomi at a stand scale in a Spanish heathland
Cited by: 27
Author(s): Enrique Cardillo, Angel Acedo, E. Abad
Software Mentions: 8
Published: over 6 years ago

10.1186/s40169-020-0259-0

Whole‐transcriptome sequencing uncovers core regulatory modules and gene signatures of human fetal growth restriction
Cited by: 13
Author(s): Xing Wang, Jun Yu, Yiwei Yang, Xiaoqin Liu, Xiaobo Zhao, Xudong Guo, Tao Duan, Chenqi Lu
Software Mentions: 8
Published: almost 5 years ago

10.3390/plants10081512

Floral Scent Evolution in the Genus Jaborosa (Solanaceae): Influence of Ecological and Environmental Factors
Cited by: 6
Author(s): Marcela Moré, Florencia Soteras, Ana C. Ibañez, Stefan Dötterl, Andrea A. Cocucci, Robert A. Raguso
Software Mentions: 8
Published: over 3 years ago

10.1080/0886022X.2020.1810068

Prediction models for acute kidney injury in patients with gastrointestinal cancers: a real-world study based on Bayesian networks
Cited by: 14
Author(s): Yang Li, Xiaohong Chen, Ziyan Shen, Yimei Wang, Jiayue Hu, Yunlu Zhang, Jiacheng Xu, Xiaoqiang Ding
Software Mentions: 7
Published: almost 5 years ago

10.1186/s12885-020-07051-5

Impact of liver fibrosis score on prognosis after common therapies for intrahepatic cholangiocarcinoma: a propensity score matching analysis
Cited by: 4
Author(s): Jian Xi Zhang, Peipei Li, Zhibin Chen, Huogui Lin, Zhezhen Cai, Weijia Liao, Zirong Pan
Software Mentions: 7
Published: over 4 years ago

10.3390/s20205879

A Shape Approximation for Medical Imaging Data
Cited by: 2
Author(s): Shih‐Feng Huang, Yung-Hsuan Wen, Chi-Hsiang Chu, Chien‐Chin Hsu
Software Mentions: 7
Published: about 4 years ago

10.1371/journal.pone.0229146

Vegetation changes in temperate ombrotrophic peatlands over a 35 year period
Cited by: 20
Author(s): Nicolas Pinceloup, Monique Poulin, Marie‐Hélène Brice, Stéphanie Pellerin
Software Mentions: 7
Published: almost 5 years ago

10.3389/fphar.2021.605764

Robust Performance of Potentially Functional SNPs in Machine Learning Models for the Prediction of Atorvastatin-Induced Myalgia
Cited by: 7
Author(s): Brandon Nick Sern Ooi, Raechell, Ariel Fangting Ying, Yong Zher Koh, Jian Yu, Sherman W. L. Yee, Justin H. S. Lee, Samuel S. Chong, Jack Wei Chieh Tan, Jing Liu, Caroline Lee, Chester L. Drum
Software Mentions: 7
Published: over 3 years ago

10.3389/fpsyg.2020.548506

Effect of the Novel Coronavirus Pneumonia Pandemic on Medical Students’ Psychological Stress and Its Influencing Factors
Cited by: 33
Author(s): Ye Wan, Xinxin Ye, Yuanyuan Liu, Qixi Liu, Somayeh Vafaei, Yinghong Gao, Haoyong Yu, Yanyan Zhong, Chenju Zhan
Software Mentions: 7
Published: about 4 years ago

10.3389/fvets.2019.00389

Simulation Based Evaluation of Time Series for Syndromic Surveillance of Cattle in Switzerland
Cited by: 1
Author(s): Céline Faverjon, Sara Schärrer, D. Hadorn, John Berezowski
Software Mentions: 6
Published: about 5 years ago

10.1093/conphys/coab071

Water deprivation compromises maternal physiology and reproductive success in a cold and wet adapted snake Vipera berus
Cited by: 12
Author(s): Mathias Dezetter, Jean‐François Le Galliard, Gaëtan Guiller, Michaël Guillon, Mathieu Leroux‐Coyau, Sandrine Meylan, François Brischoux, Frédéric Angelier, Olivier Lourdais
Software Mentions: 6
Published: almost 4 years ago

10.7150/jca.47125

Distinct Impacts of Pre-Operative Antiviral Treatment on Post-Operative Outcomes of HBV-related Hepatocellular Carcinoma: A Landmark Analysis
Cited by: 2
Author(s): Jun Fu, Zongren Ding, Qinjunjie Chen, Kongying Lin, Hongzhi Liu, Yinghong Gao, Yongyi Zeng, Haitao Li, Feng Shen, Jingfeng Liu
Software Mentions: 6
Published: almost 4 years ago

10.1289/ehp.1206132

Heat, Heat Waves, and Hospital Admissions among the Elderly in the United States, 1992–2006
Cited by: 194
Author(s): Carina J. Gronlund, Antonella Zanobetti, Joel Schwartz, Gregory A. Wellenius, Marie S. O’Neill
Software Mentions: 6
Published: about 10 years ago

10.1371/journal.pgen.1009038

Selection and hybridization shaped the rapid spread of African honey bee ancestry in the Americas
Cited by: 40
Author(s): Erin Calfee, Marcelo Nicolás Agra, María Alejandra Palacio, Santiago R. Ramírez, Graham Coop
Software Mentions: 6
Published: about 4 years ago

10.1186/s13071-020-04098-y

Rats as potential reservoirs for neglected zoonotic Bartonella species in Flanders, Belgium
Cited by: 7
Author(s): Maria Krügel, Martin Pfeffer, Nina Król, Christian Imholt, Kristof Baert, Rainer G. Ulrich, Anna Obiegala
Software Mentions: 6
Published: over 4 years ago

10.3390/cancers11010101

SP1 and STAT3 Functionally Synergize to Induce the RhoU Small GTPase and a Subclass of Non-canonical WNT Responsive Genes Correlating with Poor Prognosis in Breast Cancer
Cited by: 16
Author(s): Emanuele Monteleone, Valeria Orecchia, Paola Corrieri, Davide Schiavone, Lidia Avalle, Enrico Moiso, Aurora Savino, Ivan Molineris, Paolo Provero, Valeria Poli
Software Mentions: 5
Published: almost 6 years ago

10.1371/journal.pmed.1001279

Surveillance of Infection Severity: A Registry Study of Laboratory Diagnosed Clostridium difficile
Cited by: 9
Author(s): Iryna Schlackow, A Sarah Walker, Kate E. Dingle, David Griffiths, Sarah Oakley, Jack W. Finney, Ali Vaughan, Martin J. Gill, Derrick W. Crook, Tim E. A. Peto, David Wyllie
Software Mentions: 5
Published: over 12 years ago

10.1371/journal.pone.0104947

Voxel-Wise Motion Artifacts in Population-Level Whole-Brain Connectivity Analysis of Resting-State fMRI
Cited by: 22
Author(s): Tamás Spisák, András Jakab, Sándor Attila Kis, Gábor Opposits, Csaba Aranyi, Ervin Berényi, Miklós Emri
Software Mentions: 5
Published: about 10 years ago

10.1038/s41598-020-72228-8

Information content best characterises the hemispheric selectivity of the inferior parietal lobe: a meta-analysis
Cited by: 5
Author(s): Oliver Gray, Lewis E Fry, Daniela Montaldi
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pone.0136830

Methodological Aspects of the Potential Use of Dendrochronological Techniques When Analyzing the Long-Term Impact of Tourism on Protected Areas
Cited by: 4
Author(s): Szymon Ciapała, Paweł Adamski
Software Mentions: 5
Published: over 9 years ago

10.1186/s12931-019-1085-z

Airway host-microbiome interactions in chronic obstructive pulmonary disease
Cited by: 82
Author(s): Zhang Wang, Barbara Maschera, Simon Lea, Umme Kolsum, David Michalovich, Stephanie Van Horn, Christopher Traini, James R. Brown, Edith M. Hessel, Dave Singh
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.ppat.1004940

Geometric Constraints Dominate the Antigenic Evolution of Influenza H3N2 Hemagglutinin
Cited by: 41
Author(s): Austin G. Meyer, Claus O. Wilke
Software Mentions: 5
Published: over 9 years ago

10.1001/jamanetworkopen.2019.16205

Association Between Acute Gastroenteritis and Continuous Use of Proton Pump Inhibitors During Winter Periods of Highest Circulation of Enteric Viruses
Cited by: 35
Author(s): Ana‐Maria Vilcu, Laure Sabatte, Thierry Blanchon, Cécile Souty, Milka Maravic, Magali Lemaître, Olivier Steichen, Thomas Hanslik
Software Mentions: 5
Published: about 5 years ago

10.3390/insects10120453

Effects of Detritivores on Nutrient Dynamics and Corn Biomass in Mesocosms
Cited by: 2
Author(s): Josephine Lindsey-Robbins, Angélica Vázquez‐Ortega, Kevin E. McCluney, Shannon L. Pelini
Software Mentions: 5
Published: almost 5 years ago

10.1002/hbm.24941

Network failures: When incentives trigger impulsive responses
Cited by: 6
Author(s): Peter Zhukovsky, Sharon Morein‐Zamir, Chun Meng, Jeffrey W. Dalley, Karen D. Ersche
Software Mentions: 5
Published: over 4 years ago

10.1186/s13059-020-02148-3

Variation around the dominant viral genome sequence contributes to viral load and outcome in patients with Ebola virus disease
Cited by: 17
Author(s): Xiaofeng Dong, Jordana Muñoz-Basagoiti, Natasha Y. Rickett, Georgios Pollakis, William A. Paxton, Stephan Günther, Romy Kerber, Lisa F. P. Ng, Michael J. Elmore, N’Faly Magassouba, Miles W. Carroll, David A. Matthews, Julian A. Hiscox
Software Mentions: 5
Published: about 4 years ago

10.1016/S2589-7500(21)00115-1

Anosmia, ageusia, and other COVID-19-like symptoms in association with a positive SARS-CoV-2 test, across six national digital surveillance platforms: an observational study
Cited by: 48
Author(s): Carole H. Sudre, Ayya Keshet, Mark S. Graham, Amit D. Joshi, Smadar Shilo, Hagai Rossman, Benjamin Murray, Erika Molteni, Kerstin Kläser, Liane S Canas, Michela Antonelli, Long H. Nguyen, David A. Drew, Marc Modat, Joan Capdevila Pujol, Sajaysurya Ganesh, Jonathan Wolf, Tomer Meir, Andrew T. Chan, Claire J. Steves, Tim D. Spector, John S. Brownstein, Eran Segal, Sébastien Ourselin, Christina M Astley
Software Mentions: 5
Published: over 3 years ago

10.3389/fonc.2020.541849

Radiomics Nomogram of DCE-MRI for the Prediction of Axillary Lymph Node Metastasis in Breast Cancer
Cited by: 18
Author(s): Ning Mao, Yi Dai, Fan Lin, Heng Ma, Shaofeng Duan, Haizhu Xie, Wenlei Zhao, Nan Hong
Software Mentions: 5
Published: about 4 years ago

10.1111/eva.12875

Weak genetic structure despite strong genomic signal in lesser sandeel in the North Sea
Cited by: 16
Author(s): Belén Jiménez‐Mena, Alan Le Moan, Asbjørn Christensen, Mikael van Deurs, Henrik Mosegaard, Jakob Hemmer‐Hansen, Dorte Bekkevold
Software Mentions: 5
Published: about 5 years ago

10.1371/journal.pone.0225617

Subjective value then confidence in human ventromedial prefrontal cortex
Cited by: 22
Author(s): Allison Shapiro, Scott T. Grafton
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pntd.0004626

Reproductive Incompatibility Involving Senegalese Aedes aegypti (L) Is Associated with Chromosome Rearrangements
Cited by: 21
Author(s): Laura B. Dickson, Maria V. Sharakhova, Vladimir A. Timoshevskiy, Karen Fleming, Alex Caspary, Massamba Sylla, William C. Black
Software Mentions: 4
Published: over 8 years ago

10.1093/aobpla/ply023

Within- and trans-generational plasticity: seed germination responses to light quantity and quality
Cited by: 14
Author(s): Katherine Vayda, Kathleen Donohue, Gabriela Alejandra Auge
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2105-14-166

GWAS on your notebook: fast semi-parallel linear and logistic regression for genome-wide association studies
Cited by: 35
Author(s): Karolina Sikorska, Emmanuel Lesaffre, Patrick J. F. Groenen, Paul H.C. Eilers
Software Mentions: 4
Published: over 11 years ago

10.1186/s12862-018-1228-8

Contemporary ancestor? Adaptive divergence from standing genetic variation in Pacific marine threespine stickleback
Cited by: 26
Author(s): Matthew R. J. Morris, Ella Bowles, Brandon E. Allen, Heather A. Jamniczky, Sean M. Rogers
Software Mentions: 4
Published: over 6 years ago

10.1186/s12920-021-00960-9

Gene network analyses unveil possible molecular basis underlying drug-induced glaucoma
Cited by: 3
Author(s): Ruofan Ding, Qian Yu, Ke Liu, Juan Du, Huajun Yin, Zhi-Liang Ji
Software Mentions: 4
Published: over 3 years ago

10.1186/1752-0509-7-70

Identification of yeast cell cycle regulated genes based on genomic features
Cited by: 8
Author(s): Chao Cheng, Yao Fu, Linsheng Shen, Mark Gerstein
Software Mentions: 4
Published: almost 12 years ago

10.1007/s10519-015-9764-0

What Cure Models Can Teach us About Genome-Wide Survival Analysis
Cited by: 4
Author(s): Sven Stringer, Damiaan Denys, René S. Kahn, Eske M. Derks
Software Mentions: 4
Published: about 9 years ago

10.1016/j.patter.2020.100008

gfoRmula: An R Package for Estimating the Effects of Sustained Treatment Strategies via the Parametric g-formula
Cited by: 30
Author(s): Seán McGrath, Victoria Lin, Zilu Zhang, Lucia Petito, Roger Logan, Miguel A. Hernán, Jessica Young
Software Mentions: 4
Published: over 4 years ago

10.7717/peerj.9121

Distribution of the acoustic occurrence of dolphins during the summers 2011 to 2015 in the Upper Gulf of California, Mexico
Cited by: 2
Author(s): Gustavo Cárdenas-Hinojosa, Horacio de la Cueva, Tim Gerrodette, Armando Jaramillo-Legorreta
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pntd.0008703

Complex relationships between Aedes vectors, socio-economics and dengue transmission—Lessons learned from a case-control study in northeastern Thailand
Cited by: 16
Author(s): Bénédicte Fustec, Thipruethai Phanitchat, Mohammad Injamul Hoq, Sirinart Aromseree, Chamsai Pientong, Kesorn Thaewnongiew, Tipaya Ekalaksananan, Michael J. Bangs, Vincent Corbel, Alexander Nast, Hans J. Overgaard
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pone.0068322

Reduced Incidence of Prevotella and Other Fermenters in Intestinal Microflora of Autistic Children
Cited by: 660
Author(s): Dae Wook Kang, Jin Gyoon Park, Zehra Esra Ilhan, Garrick Wallstrom, Joshua LaBaer, James B. Adams, Rosa Krajmalnik‐Brown
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0144359

Beyond Axillary Lymph Node Metastasis, BMI and Menopausal Status Are Prognostic Determinants for Triple-Negative Breast Cancer Treated by Neoadjuvant Chemotherapy
Cited by: 25
Author(s): Hélène Bonsang-Kitzis, Léonor Chaltier, Lisa Belin, Alexia Savignoni, Roman Rouzier, Marie‐Paule Sablin, Florence Lerebours, François-Clément Bidard, Paul Cottu, Xavier Sastre-Garau, Marick Laé, Jean‐Yves Pierga, Fabien Reyal
Software Mentions: 4
Published: almost 9 years ago

10.1371/journal.pone.0159888

Prognostic Impact of Time to Ipsilateral Breast Tumor Recurrence after Breast Conserving Surgery
Cited by: 14
Author(s): Marie Gosset, Anne-Sophie Hamy, Peter Mallon, M Deloménie, D. Mouttet, Jean‐Yves Pierga, Marick Laé, A. Fourquet, Roman Rouzier, Fabien Reyal, Jean-Guillaume Féron
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0071446

Timing of Favorable Conditions, Competition and Fertility Interact to Govern Recruitment of Invasive Chinese Tallow Tree in Stressful Environments
Cited by: 9
Author(s): Christopher A. Gabler, Evan Siemann
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0198961

Modelling of the breadth of expression from promoter architectures identifies pro-housekeeping transcription factors
Cited by: 4
Author(s): Łukasz Huminiecki
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0242334

Predicting time to graduation at a large enrollment American university
Cited by: 6
Author(s): John M. Aiken, Riccardo De Bin, M. Hjorth‐Jensen, Marcos D. Caballero
Software Mentions: 4
Published: about 4 years ago

10.3389/fpsyg.2020.00785

The Effect of Domestication and Experience on the Social Interaction of Dogs and Wolves With a Human Companion
Cited by: 24
Author(s): Martina Lazzaroni, Friederike Range, Jessica Backes, Katrin Portele, Katharina Scheck, Sarah Marshall-Pescini
Software Mentions: 4
Published: over 4 years ago

10.3389/fpsyg.2020.573730

Flexibility in Problem Solving: Analogical Transfer of Tool Use in Toddlers Is Immune to Delay
Cited by: 5
Author(s): Katarzyna Bobrowicz, Felicia Lindström, Marcus Lindblom Lovén, Elia Psouni
Software Mentions: 4
Published: about 4 years ago

10.1534/g3.119.400934

Sexual Selection Does Not Increase the Rate of Compensatory Adaptation to a Mutation Influencing a Secondary Sexual Trait inDrosophila melanogaster
Cited by: 1
Author(s): Christopher H. Chandler, Anna Mammel, Ian Dworkin
Software Mentions: 4
Published: over 4 years ago

10.1186/gb-2014-15-2-r30

Using high-density DNA methylation arrays to profile copy number alterations
Cited by: 109
Author(s): Andrew Feber, Paul Guilhamon, Matthias Lechner, Tim R. Fenton, Gareth A. Wilson, Christina Thirlwell, Tiffany Morris, Adrienne M. Flanagan, Andrew E. Teschendorff, John D. Kelly, Stephan Beck
Software Mentions: 4
Published: almost 11 years ago

10.1186/s13073-020-00787-6

Molecular correlates and therapeutic targets in T cell-inflamed versus non-T cell-inflamed tumors across cancer types
Cited by: 21
Author(s): Riyue Bao, Daniel Stapor, Jason J. Luke
Software Mentions: 4
Published: about 4 years ago

10.1098/rsos.201717

Fertility and mortality impacts of thermal stress from experimental heatwaves on different life stages and their recovery in a model insect
Cited by: 43
Author(s): Kris Sales, Ramakrishnan Vasudeva, Matthew J. G. Gage
Software Mentions: 4
Published: almost 4 years ago

10.1038/s41598-020-61288-5

Forecasting risk gene discovery in autism with machine learning and genome-scale data
Cited by: 21
Author(s): Leo Brueggeman, Tanner Koomar, Jacob J. Michaelson
Software Mentions: 4
Published: over 4 years ago

10.1038/s41598-020-78392-1

Vital signs assessed in initial clinical encounters predict COVID-19 mortality in an NYC hospital system
Cited by: 37
Author(s): Elza Rechtman, Paul Curtin, Esmeralda Álvarez Navarro, Sharon Nirenberg, Megan Horton
Software Mentions: 4
Published: almost 4 years ago

10.1100/2012/380495

Gene Expression Profiles for Predicting Metastasis in Breast Cancer: A Cross-Study Comparison of Classification Methods
Cited by: 15
Author(s): Mark Burton, Mads Thomassen, Qihua Tan, Torben A. Kruse
Software Mentions: 4
Published: almost 13 years ago

10.3390/ijerph17010256

Salivary Microbiome and Cigarette Smoking: A First of Its Kind Investigation in Jordan
Cited by: 32
Author(s): Walid Al-Zyoud, Rima Hajjo, Ahmed Abu-Siniyeh, Sarah Hajjaj
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.00522

Cellular resolution models for even skipped regulation in the entire Drosophila embryo
Cited by: 43
Author(s): Garth R Ilsley, Jasmin Fisher, Rolf Apweiler, Angela H. DePace, Nicholas M. Luscombe
Software Mentions: 4
Published: over 11 years ago

10.7554/eLife.67577

Broad geographic sampling reveals the shared basis and environmental correlates of seasonal adaptation in Drosophila
Cited by: 57
Author(s): Heather E. Machado, Alan O. Bergland, Ryan W. Taylor, Susanne Tilk, Emily L. Behrman, Kelly A. Dyer, Daniel K. Fabian, Thomas Flatt, Josefa González, Talia L. Karasov, Bernard Kim, Iryna Kozeretska, Brian P. Lazzaro, Thomas J. S. Merritt, John E. Pool, Katherine R. O’Brien, Subhash Rajpurohit, Paula R. Roy, Stephen W. Schaeffer, Svitlana Serga, Paul S. Schmidt, Dmitri A. Petrov
Software Mentions: 4
Published: over 3 years ago

10.7554/eLife.09977

Fast turnover of genome transcription across evolutionary time exposes entire non-coding DNA to de novo gene emergence
Cited by: 105
Author(s): Rafik Neme, Diethard Tautz
Software Mentions: 3
Published: almost 9 years ago

10.3390/ijerph16234842

Predicting Hepatitis B Virus Infection Based on Health Examination Data of Community Population
Cited by: 14
Author(s): Ying Wang, Zhicheng Du, Wayne R. Lawrence, Yun Huang, Yu Deng
Software Mentions: 3
Published: about 5 years ago

10.1371/journal.pbio.1002359

Near-Stasis in the Long-Term Diversification of Mesozoic Tetrapods
Cited by: 52
Author(s): Roger B. J. Benson, Richard J. Butler, John Alroy, Philip D. Mannion, Matthew T. Carrano, Graeme T. Lloyd
Software Mentions: 3
Published: almost 9 years ago

10.1371/journal.pntd.0009106

Megacities as drivers of national outbreaks: The 2017 chikungunya outbreak in Dhaka, Bangladesh
Cited by: 14
Author(s): Ayesha S. Mahmud, Iqbal Kabir, Kenth Engø‐Monsen, Sania Tahmina, Baizid Khoorshid Riaz, Akram Hossain, Fahmida Khanom, Mujibor Rahman, Khalilur Rahman, Mehruba Sharmin, Dewan Mashrur Hossain, Shakila Yasmin, Mostafa Ahmed, Mirza Afreen Fatima Lusha, Caroline O. Buckee
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0098254

Matrix Models for Size-Structured Populations: Unrealistic Fast Growth or Simply Diffusion?
Cited by: 20
Author(s): Nicolas Picard, Jingjing Liang
Software Mentions: 3
Published: over 10 years ago

10.1371/journal.pone.0245058

Efficient association mapping from k-mers—An application in finding sex-specific sequences
Cited by: 5
Author(s): Zakaria Mehrab, Jaiaid Mobin, Ibrahim Asadullah Tahmid, Atif Rahman
Software Mentions: 3
Published: almost 4 years ago

10.1186/s13195-021-00814-7

An integrative multi-omics approach reveals new central nervous system pathway alterations in Alzheimer’s disease
Cited by: 40
Author(s): Christopher Clark, Loïc Dayon, Mojgan Masoodi, Gene L. Bowman, Julius Popp
Software Mentions: 3
Published: over 3 years ago

10.1051/parasite/2013040

Influence of introduced vs. native parasites on the body condition of migrant silver eels
Cited by: 15
Author(s): Claudia Gérard, Thomas Trancart, Elsa Amilhat, Elisabeth Faliex, Laure Virag, Éric Feunteun, Anthony Acou
Software Mentions: 3
Published: almost 12 years ago

10.1186/s12943-016-0560-0

Cancer somatic mutations cluster in a subset of regulatory sites predicted from the ENCODE data
Cited by: 3
Author(s): Nisar Ahmed Shar, M. Vijayabaskar, David R. Westhead
Software Mentions: 3
Published: about 8 years ago

10.3389/fpls.2021.715377

Homo- and Dikaryons of the Arbuscular Mycorrhizal Fungus Rhizophagus irregularis Differ in Life History Strategy
Cited by: 14
Author(s): Edward Umberto Serghi, Vasilis Kokkoris, Calvin Cornell, Jeremy R. Dettman, Franck Stefani, Nicolas Corradi
Software Mentions: 3
Published: over 3 years ago

10.1038/s41598-020-69233-2

A machine learning framework for multi-hazards modeling and mapping in a mountainous area
Cited by: 56
Author(s): Saleh Yousefi, Hamid Reza Pourghasemi, Sayed Naeim Emami, Soheila Pouyan, Saeedeh Eskandari, John P. Tiefenbacher
Software Mentions: 3
Published: over 4 years ago

10.1186/s13018-020-02180-w

A 9 mRNAs-based diagnostic signature for rheumatoid arthritis by integrating bioinformatic analysis and machine-learning
Cited by: 10
Author(s): Jianyong Liu, Ningjie Chen
Software Mentions: 3
Published: almost 4 years ago

10.1371/journal.pone.0150723

Incidence and Mortality Trends in German Women with Breast Cancer Using Age, Period and Cohort 1999 to 2008
Cited by: 9
Author(s): Shoma Berkemeyer, Dorothea Lemke, Hans Werner Hense
Software Mentions: 3
Published: almost 9 years ago

10.3389/fpsyg.2020.570587

Language and Cognition in Gaelic-English Young Adult Bilingual Speakers: A Positive Effect of School Immersion Program on Attentional and Grammatical Skills
Cited by: 8
Author(s): Maria Garraffa, Mateo Obregón, Bernadette O’Rourke, Antonella Sorace
Software Mentions: 3
Published: about 4 years ago

10.1371/journal.pone.0180735

Churn prediction of mobile and online casual games using play log data
Cited by: 34
Author(s): Seungwook Kim, Daeyoung Choi, Eunjung Lee, Wonjong Rhee
Software Mentions: 3
Published: over 7 years ago

10.1017/S0950268815000710

Shrinking a large dataset to identify variables associated with increased risk of Plasmodium falciparum infection in Western Kenya
Cited by: 4
Author(s): Marlène Tremblay, James Dahm, C. N. Wamae, William A. de Glanville, Eric M. Fèvre, Dörte Döpfer
Software Mentions: 3
Published: over 9 years ago

10.1371/journal.pgen.1002844

Epigenetic Remodeling of Meiotic Crossover Frequency in Arabidopsis thaliana DNA Methyltransferase Mutants
Cited by: 148
Author(s): Nataliya E. Yelina, Kyuha Choi, Liudmila Chelysheva, Malcolm Macaulay, Bastiaan de Snoo, Erik Wijnker, Nigel Miller, Jan Drouaud, Mathilde Grelon, Gregory P. Copenhaver, Christine Mézard, Krystyna A. Kelly, Ian Henderson
Software Mentions: 3
Published: over 12 years ago

10.1186/s12711-018-0392-z

Selective advantage of implementing optimal contributions selection and timescales for the convergence of long-term genetic contributions
Cited by: 7
Author(s): David M. Howard, Ricardo Pong‐Wong, P. W. Knap, Valentin D. Kremer, John Woolliams
Software Mentions: 3
Published: over 6 years ago

10.1186/gb-2010-11-5-r50

Modeling non-uniformity in short-read rates in RNA-Seq data
Cited by: 183
Author(s): Jun Li, Hui Jiang, Wing Hung Wong
Software Mentions: 3
Published: almost 15 years ago

10.1186/gb-2012-13-9-r79

Dysfunction of the intestinal microbiome in inflammatory bowel disease and treatment
Cited by: 2,070
Author(s): Xochitl C. Morgan, Timothy L. Tickle, Harry Sokol, Dirk Gevers, Kathryn Devaney, Doyle V. Ward, Joshua A Reyes, Samir A. Shah, Neal S. LeLeiko, Scott B. Snapper, Athos Bousvaros, Joshua R. Korzenik, Bruce E. Sands, Ramnik J. Xavier, Curtis Huttenhower
Software Mentions: 3
Published: almost 13 years ago

10.1186/gb-2013-14-7-r74

GLiMMPS: Robust statistical model for regulatory variation of alternative splicing using RNA-seq data
Cited by: 72
Author(s): Keyan Zhao, Zhi-xiang Lu, Juw Won Park, Qing Zhou, Yi Xing
Software Mentions: 3
Published: almost 12 years ago

10.1371/journal.pone.0154741

Stability and Longevity in the Publication Careers of U.S. Doctorate Recipients
Cited by: 14
Author(s): Cathelijn J. F. Waaijer, Benoît Macaluso, Cassidy R. Sugimoto, Vincent Larivière
Software Mentions: 3
Published: over 8 years ago

10.1016/S1473-3099(18)30791-6

Early transmission and case fatality of Ebola virus at the index site of the 2013–16 west African Ebola outbreak: a cross-sectional seroprevalence survey
Cited by: 17
Author(s): Joseph Timothy, Yper Hall, Joseph Akoi-Boré, Boubacar Diallo, Thomas Tipton, Hilary Bower, Thomas Strecker, Judith R. Glynn, Miles W. Carroll
Software Mentions: 3
Published: over 5 years ago

10.3390/ijerph16214186

Self-Reported Sleep Disturbance from Road, Rail and Aircraft Noise: Exposure-Response Relationships and Effect Modifiers in the SiRENE Study
Cited by: 33
Author(s): Mark Brink, Beat Schäffer, Danielle Vienneau, Reto Pieren, María Foraster, Ikenna C. Eze, Franziska Rudzik, Laurie Thiesse, Christian Cajochen, Nicole Probst‐Hensch, Martin Röösli, Jean Marc Wunderli
Software Mentions: 3
Published: about 5 years ago

10.7554/eLife.69698

Improving statistical power in severe malaria genetic association studies by augmenting phenotypic precision
Cited by: 18
Author(s): James A Watson, Carolyne Ndila, Sophie Uyoga, Alexander Macharia, Gideon Nyutu, Shebe Mohammed, Caroline Ngetsa, Neema Mturi, Norbert Peshu, Benjamin Tsofa, Kirk A. Rockett, Stije J. Leopold, Hugh Kingston, Elizabeth C. George, Kathryn Maitland, Nicholas P. J. Day, Arjen M. Dondorp, Philip Bejon, Thomas N. Williams, Chris Holmes, Nicholas J. White
Software Mentions: 3
Published: over 3 years ago

10.1192/bjo.2021.57

Victimisation of individuals with serious mental illness living in sheltered housing: differential impact of risk factors related to clinical and demographic characteristics
Cited by: 4
Author(s): Milan Zarchev, Cornelis L. Mulder, Jens Henrichs, Diana Roeg, Stefan Bogaerts, Jaap van Weeghel, Astrid M. Kamperman
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0210358

Ocean acidification at a coastal CO2 vent induces expression of stress-related transcripts and transposable elements in the sea anemone Anemonia viridis
Cited by: 11
Author(s): Ilona Urbárová, Sylvain Forêt, Mikael Dahl, Åse Emblem, Marco Milazzo, Jason M. Hall‐Spencer, Steinar Johansen
Software Mentions: 3
Published: over 5 years ago

10.1186/s13040-020-00223-w

Diagnosis of thyroid nodules for ultrasonographic characteristics indicative of malignancy using random forest
Cited by: 9
Author(s): Dan Chen, Jun Hu, Mei Zhu, Niansheng Tang, Yang Yang, Yuran Feng
Software Mentions: 3
Published: over 4 years ago

10.1371/journal.pone.0142360

Can Genetic Analysis of Putative Blood Alzheimer’s Disease Biomarkers Lead to Identification of Susceptibility Loci?
Cited by: 12
Author(s): Robert C. Barber, Nicole Phillips, Jeffrey L. Tilson, Ryan M. Huebinger, Shantanu Shewale, Jessica L. Koenig, Jeffrey S. Mitchel, Sid O’Bryant, Stephen C. Waring, Ramon Diaz‐Arrastia, Scott A. Chasse, Kirk C. Wilhelmsen
Software Mentions: 3
Published: about 9 years ago

10.1002/ece3.2614

Genetic by environmental variation but no local adaptation in oysters ( Crassostrea virginica )
Cited by: 18
Author(s): A. Randall Hughes, Torrance C. Hanley, James E. Byers, Jonathan H. Grabowski, Jennafer C. Malek, Michael F. Piehler, David L. Kimbro
Software Mentions: 3
Published: almost 8 years ago

10.1186/1753-6561-5-S9-S25

Interrogating population structure and its impact on association tests
Cited by: 3
Author(s): Huaizhen Qin, Robert C. Elston, Xiaofeng Zhu
Software Mentions: 3
Published: about 13 years ago

10.1172/jci.insight.140399

Identifying cell-enriched miRNAs in kidney injury and repair
Cited by: 15
Author(s): Katie Connor, Oliver Teenan, Carolynn Cairns, Victoria Banwell, Ruth Thomas, Julie Rodor, Sarah Finnie, Riinu Pius, Gillian M. Tannahill, Vishal Sahni, Caroline O.S. Savage, Jeremy Hughes, Ewen M Harrison, Robert B. Henderson, Lorna Marson, Bryan Conway, Stephen J. Wigmore, Laura Denby
Software Mentions: 3
Published: almost 4 years ago

Projects: pypi: glm

Papers Mentioning glm 190