Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1716-1

https://doi.org/10.1186/s13059-019-1716-1

A practical guide to methods controlling false discoveries in computational biology

Cited by: 178
Author(s): Keegan Korthauer, Patrick K. Kimes, Claire Duvallet, Alejandro Reyes, Ayshwarya Subramanian, Mingxiang Teng, Chinmay Shukla, Eric J. Alm, Stephanie C. Hicks
Published: over 5 years ago

Software Mentions 11

bioconductor: csaw
ChIP-Seq Analysis with Windows
Papers that mentioned: 29
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
bioconductor: MAST
Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668
bioconductor: scDD
Mixture modeling of single-cell RNA-seq data to identify genes with differential distributions
Papers that mentioned: 16
cran: FDRreg
False discovery rate regression
Papers that mentioned: 3
cran: fdrtool
Estimation of (Local) False Discovery Rates and Higher Criticism
Papers that mentioned: 124
cran: locfdr
Computes Local False Discovery Rates
Papers that mentioned: 30
pypi: glm
glm Python library
Papers that mentioned: 190
pypi: MAST
MAterials Simulation Toolkit
Papers that mentioned: 668