cran: mgcv | Projects | Ecosyste.ms: Papers

10.7717/peerj.6398

Quantitative color profiling of digital images with earth mover’s distance using the R package colordistance
Cited by: 49
Author(s): Hannah Weller, Mark W. Westneat
Software Mentions: 23
Published: almost 6 years ago

10.1371/journal.pntd.0009252

Optimising predictive modelling of Ross River virus using meteorological variables
Cited by: 4
Author(s): Iain S. Koolhof, Simon M. Firestone, SS Bettiol, Michael A. Charleston, Katherine B Gibney, Peter J. Neville, Andrew Jardine, Scott Carver
Software Mentions: 23
Published: almost 4 years ago

10.1371/journal.pone.0151935

Novel and Lost Forests in the Upper Midwestern United States, from New Estimates of Settlement-Era Composition, Stem Density, and Biomass
Cited by: 48
Author(s): Simon Goring, David J. Mladenoff, Charles V. Cogbill, Sydne Record, Christopher J. Paciorek, Stephen T. Jackson, Michael C. Dietze, Andria Dawson, Jaclyn Hatala Matthes, J. S. McLachlan, John W. Williams
Software Mentions: 17
Published: about 8 years ago

10.7717/peerj.9539

The importance of open science for biological assessment of aquatic environments
Cited by: 15
Author(s): Marcus W. Beck, Casey C. O’Hara, Julia S. Stewart Lowndes, Raphael D. Mazor, Susanna Theroux, David J. Gillett, Belize Lane, Gregory Gearheart
Software Mentions: 17
Published: over 4 years ago

10.1371/journal.pgen.1008866

Phylogenetic background and habitat drive the genetic diversification of Escherichia coli
Cited by: 119
Author(s): Marie Touchon, Perrin Amandine, Jorge Moura de Sousa, Belinda Vangchhia, Samantha Burn, Claire O’Brien, Erick Denamur, David M. Gordon, Eduardo P. C. Rocha
Software Mentions: 16
Published: over 4 years ago

10.1186/1471-2105-9-439

CMA – a comprehensive Bioconductor package for supervised classification with high dimensional data
Cited by: 90
Author(s): Martin Slawski, Martin Däumer, Anne‐Laure Boulesteix
Software Mentions: 16
Published: about 16 years ago

10.1002/ece3.6959

In the shadows of snow leopards and the Himalayas: density and habitat selection of blue sheep in Manang, Nepal
Cited by: 11
Author(s): Marc Filla, Rinzin Phunjok Lama, Tashi Rapte Ghale, Johannes Signer, Tim Filla, Raja Ram Aryal, Marco Heurich, Matthias Waltert, Niko Balkenhol, Igor Khorozyan
Software Mentions: 16
Published: about 4 years ago

10.1093/conphys/coaa131

Automated flow control of a multi-lane swimming chamber for small fishes indicates species-specific sensitivity to experimental protocols
Cited by: 3
Author(s): Björn Illing, Andrea Severati, Justin Hochen, Paul M. Boyd, Paulin Raison, Rachel Mather, Adam T. Downie, Jodie L. Rummer, Frederieke J. Kroon, Craig Humphrey
Software Mentions: 16
Published: almost 4 years ago

10.1371/journal.pntd.0007969

Severity Index for Suspected Arbovirus (SISA): Machine learning for accurate prediction of hospitalization in subjects suspected of arboviral infection
Cited by: 10
Author(s): Rachel Sippy, Daniel F. Farrell, Daniel A. Lichtenstein, Ryan Nightingale, Megan Harris, Joseph Toth, Paris Hantztidiamantis, Nicholas Usher, Cinthya Cueva Aponte, Julio Barzallo Aguilar, Anthony Puthumana, Christina D. Lupone, Timothy P. Endy, Sadie J. Ryan, Anna M. Stewart-Ibarra
Software Mentions: 16
Published: almost 5 years ago

10.1371/journal.pone.0188955

Gbm.auto: A software tool to simplify spatial modelling and Marine Protected Area planning
Cited by: 19
Author(s): Simon Dedman, Rick Officer, Maurice Clarke, David G. Reid, Deirdre Brophy
Software Mentions: 15
Published: about 7 years ago

10.1093/jas/skaa402

ASAS-NANP SYMPOSIUM: prospects for interactive and dynamic graphics in the era of data-rich animal science1
Cited by: 4
Author(s): Gota Morota, Hao Cheng, Dianne Cook, Emi Tanaka
Software Mentions: 15
Published: almost 4 years ago

10.7717/peerj.6876

Hierarchical generalized additive models in ecology: an introduction with mgcv
Cited by: 443
Author(s): Eric J. Pedersen, David L. Miller, Gavin L. Simpson, Noam Ross
Software Mentions: 15
Published: over 5 years ago

10.1371/journal.pntd.0002045

Drivers of Echinococcus multilocularis Transmission in China: Small Mammal Diversity, Landscape or Climate?
Cited by: 65
Author(s): Patrick Giraudoux, Francis Raoul, David Pleydell, Tiaoying Li, Xiuming Han, Jiamin Qiu, Yan Xie, Wang Hu, Akira Itō, Philip S. Craig
Software Mentions: 14
Published: almost 12 years ago

10.1002/ece3.3204

Habitat selection by Eurasian lynx (Lynx lynx) is primarily driven by avoidance of human activity during day and prey availability during night
Cited by: 50
Author(s): Marc Filla, Joe Premier, Nora Magg, Claudia Dupke, Igor Khorozyan, Matthias Waltert, Luděk Bufka, Marco Heurich
Software Mentions: 14
Published: over 7 years ago

10.7554/eLife.53392

ZCWPW1 is recruited to recombination hotspots by PRDM9 and is essential for meiotic double strand break repair
Cited by: 23
Author(s): Daniel Wells, Emmanuelle Bitoun, Daniela Moralli, Gang Zhang, Anjali Gupta Hinch, Julia Jankowska, Peter Donnelly, Catherine Green, Simon Myers
Software Mentions: 14
Published: over 4 years ago

10.3389/fmicb.2021.616013

Distribution of Bacterial Endophytes in the Non-lesion Tissues of Potato and Their Response to Potato Common Scab
Cited by: 7
Author(s): Wencong Shi, Gaoya Su, Mingcong Li, Bing Wang, Runmao Lin, Yang Yu-tian, Tao Wei, Bo Zhou, Zheng Gao
Software Mentions: 13
Published: almost 4 years ago

10.3389/fpls.2020.01206

Similar Arbuscular Mycorrhizal Fungal Communities in 31 Durum Wheat Cultivars (Triticum turgidum L. var. durum) Under Field Conditions in Eastern Canada
Cited by: 16
Author(s): Franck Stefani, Sarah Dupont, Mario Laterrière, Ron Knox, Yuefeng Ruan, Chantal Hamel, Mohamed Hijri
Software Mentions: 13
Published: over 4 years ago

10.1200/PO.20.00158

Breakthrough Cancer Pain Clinical Features and Differential Opioids Response: A Machine Learning Approach in Patients With Cancer From the IOPS-MS Study
Cited by: 9
Author(s): Francesco Pantano, Tea Zeppola, Angelo Onorato, Michele Iuliani, Sonia Simonetti, Bruno Vincenzi, Daniele Santini, Sebastiano Mercadante, Paolo Marchetti, Arturo Cuomo, Augusto Caraceni, Rocco Domenico Mediati, Renato Vellucci, Massimo Mammucari, Silvia Natoli, Marzia Lazzari, Mario Dauri, Claudio Adile, Mario Airoldi, Giuseppe Azzarello, Livio Blasi, Bruno Chiurazzi, Daniela Degiovanni, Flavio Fusco, Vittorio Guardamagna, Simeone Liguori, Liana Palermo, Sergio Mameli, Francesco Masedu, Teresita Mazzei, Rita Maria Melotti, Valentino Menardo, Danilo Miotti, S. Moroso, Gaetano Pascoletti, Stefano De Santis, Remo Orsetti, Alfonso Papa, Sergio Ricci, E. Scelzi, Michele Sofia, Federica Aielli, Alessandro Valle, Giuseppe Tonini
Software Mentions: 12
Published: about 4 years ago

10.1186/s12942-017-0097-5

Estimating the prevalence of 26 health-related indicators at neighbourhood level in the Netherlands using structured additive regression
Cited by: 18
Author(s): Jan van de Kassteele, Laurens Zwakhals, Oscar Breugelmans, Caroline Ameling, Carolien van den Brink
Software Mentions: 12
Published: over 7 years ago

10.1002/aps3.1227

Open‐source data reveal how collections‐based fungal diversity is sensitive to global change
Cited by: 24
Author(s): Carrie Andrew, Ulf Büntgen, Simon Egli, Béatrice Senn-Irlet, John‐Arvid Grytnes, Jacob Heilmann‐Clausen, Lynne Boddy, Claus Bässler, Alan C. Gange, Einar Heegaard, Klaus Høiland, Paul M. Kirk, Irmgard Krisai‐Greilhuber, Thomas W. Kuyper, Håvard Kauserud
Software Mentions: 12
Published: almost 6 years ago

10.7717/peerj.11534

AlleleShift: an R package to predict and visualize population-level changes in allele frequencies in response to climate change
Cited by: 5
Author(s): Roeland Kindt
Software Mentions: 12
Published: over 3 years ago

10.4269/ajtmh.20-0757

A Computational Modeling Study of COVID-19 in Bangladesh
Cited by: 7
Author(s): Irtesam Mahmud Khan, Ubydul Haque, Samiha Kaisar, Md. Saidur Rahman
Software Mentions: 12
Published: almost 4 years ago

10.1371/journal.pone.0195065

Dengue forecasting in São Paulo city with generalized additive models, artificial neural networks and seasonal autoregressive integrated moving average models
Cited by: 48
Author(s): Oswaldo Santos Baquero, Lidia Maria Reis Santana, Francisco Chiaravalloti Neto
Software Mentions: 12
Published: over 6 years ago

10.1186/s12859-020-03803-z

NBZIMM: negative binomial and zero-inflated mixed models, with application to microbiome/metagenomics data analysis
Cited by: 38
Author(s): Xinyan Zhang, Nengjun Yi
Software Mentions: 12
Published: about 4 years ago

10.1371/journal.pone.0225253

Visualising statistical models using dynamic nomograms
Cited by: 78
Author(s): Amirhossein Jalali, Alberto Alvarez‐Iglesias, Davood Roshan, John Newell
Software Mentions: 11
Published: about 5 years ago

10.1002/sim.7582

Dynamic prediction in functional concurrent regression with an application to child growth
Cited by: 13
Author(s): Andrew Leroux, Luo Xiao, Ciprian M. Crainiceanu, William Checkley
Software Mentions: 10
Published: about 7 years ago

10.3389/fpsyg.2018.00513

Modeling Linguistic Variables With Regression Models: Addressing Non-Gaussian Distributions, Non-independent Observations, and Non-linear Predictors With Random Effects and Generalized Additive Models for Location, Scale, and Shape
Cited by: 20
Author(s): Christophe Coupé
Software Mentions: 10
Published: over 6 years ago

10.1038/s41598-020-72369-w

Connectivity and population structure of albacore tuna across southeast Atlantic and southwest Indian Oceans inferred from multidisciplinary methodology
Cited by: 10
Author(s): Natacha Nikolic, Iratxe Montes, Maxime Lalire, Alexis Puech, Nathalie Bodin, Sophie Arnaud‐Haond, Sven E. Kerwath, Emmanuel Corse, Philippe Gaspar, Stéphanie Hollanda, Jérôme Bourjea, Wendy West, Sylvain Bonhommeau
Software Mentions: 10
Published: about 4 years ago

10.1002/embj.201386825

Key regulators control distinct transcriptional programmes in blood progenitor and mast cells
Cited by: 48
Author(s): Fernando J. Calero-Nieto, Felicia Ng, Nicola K. Wilson, Rebecca Hannah, Victoria Moignard, Ana Leal-Cervantes, Isabel Jimenez-Madrid, Evangelia Diamanti, Lorenz Wernisch, Berthold Göttgens
Software Mentions: 10
Published: over 10 years ago

10.1016/S2213-2600(21)00175-2

Changes in in-hospital mortality in the first wave of COVID-19: a multicentre prospective observational cohort study using the WHO Clinical Characterisation Protocol UK
Cited by: 71
Author(s): Annemarie B Docherty, Rachel Mulholland, Nazir Lone, Christopher P. Cheyne, Daniela De Angelis, Karla Díaz-Ordaz, Cara Donegan, Thomas M Drake, Jake Dunning, Sebastian Funk, Marta García‐Fiñana, Michelle Girvan, Hayley Hardwick, Janet Harrison, Antonia Ho, David Hughes, Ruth H. Keogh, Peter Kirwan, Gary Leeming, J. Van-Tam, Riinu Pius, Clark D Russell, Rebecca G. Spencer, Brian D. M. Tom, Lance Turtle, Peter Openshaw, J Kenneth Baillie, Ewen M Harrison, Malcolm G Semple
Software Mentions: 10
Published: over 3 years ago

10.7717/peerj.11903

Taxonomic and functional diversity of benthic macrofauna associated with rhodolith beds in SE Brazil
Cited by: 10
Author(s): Patricia Sarcinelli Stelzer, Ana Carolina de Azevedo Mazzuco, L.E. de O. Gomes, João Luiz Martins, Sérgio A. Netto, Ângelo F. Bernardino
Software Mentions: 10
Published: over 3 years ago

10.1038/s41598-020-75476-w

Mass wasting susceptibility assessment of snow avalanches using machine learning models
Cited by: 44
Author(s): Bahram Choubin, Moslem Borji, Farzaneh Sajedi Hosseini, Amir Mosavi, Adrienn Dineva
Software Mentions: 10
Published: about 4 years ago

10.1038/s41598-019-42288-6

Environmental predictors of habitat suitability and occurrence of cetaceans in the western North Atlantic Ocean
Cited by: 16
Author(s): Samuel Chávez-Rosales, Debra L. Palka, Lance P. Garrison, Elizabeth Josephson
Software Mentions: 9
Published: over 5 years ago

10.1371/journal.pone.0208126

Modeling the spatial and seasonal distribution of offshore recreational vessels in the southeast United States
Cited by: 5
Author(s): Nancy Montes, Robert Swett, Robert Ahrens
Software Mentions: 9
Published: about 6 years ago

10.1371/journal.pone.0225936

Improving distribution models of riparian vegetation with mobile laser scanning and hydraulic modelling
Cited by: 2
Author(s): Tua Nylén, Elina Kasvi, Jouni Salmela, Harri Kaartinen, Antero Kukko, Anttoni Jaakkola, Juha Hyyppä, Petteri Alho
Software Mentions: 9
Published: about 5 years ago

10.1186/s12874-019-0666-3

A review of spline function procedures in R
Cited by: 250
Author(s): Aris Perperoglou, Willi Sauerbrei, Michal Abrahamowicz, Matthias Schmid
Software Mentions: 9
Published: almost 6 years ago

10.3390/ijerph17134698

Spatio-Temporal Dynamic of Malaria Incidence: A Comparison of Two Ecological Zones in Mali
Cited by: 7
Author(s): François Freddy Ateba, Issaka Sagara, Nafomon Sogoba, Mahamoudou Touré, Drissa Konaté, Sory Ibrahim Diawara, Seidina A. S. Diakité, Ayouba Diarra, Massa Coulibaly, Mathias Dolo, Amagana Dolo, Adama Sacko, Sidibé M’Baye Thiam, Aliou Sissako, Lansana Sangaré, Mahamadou Diakité, Ousmane Koïta, Mady Cissoko, Sékou F. Traorè, Peter J. Winch, Manuel Febrero–Bande, Jeffrey G. Shaffer, Donald J. Krogtad, Hannah C. Marker, Jean Gaudart
Software Mentions: 9
Published: over 4 years ago

10.7717/peerj.7720

Estimating flowering transition dates from status-based phenological observations: a test of methods
Cited by: 11
Author(s): Shawn D. Taylor
Software Mentions: 9
Published: about 5 years ago

10.1038/s41598-019-49519-w

Recent decline in vegetative regeneration of bamboo (Yushania alpina), a key food plant for primates in Volcanoes National Park, Rwanda
Cited by: 8
Author(s): Yntze van der Hoek, Emmanuel Faida, Winnie Eckardt, Innocent Kwizera, Mia A. Derhé, Damien Caillaud, Tara S. Stoinski, Deogratias Tuyisingize
Software Mentions: 9
Published: over 5 years ago

10.7150/jca.47559

Preoperative Splenic Density for the Prediction of Survival and Adjuvant Chemotherapy Benefits in Gastric Cancer
Cited by: 1
Author(s): Weiteng Zhang, Ce Zhu, Xiang Wang, Sujun Wang, Xiao Chen, Xiaolei Chen, Xian Shen
Software Mentions: 9
Published: almost 5 years ago

10.1038/s41598-017-09382-z

New approaches to high-resolution mapping of marine vertical structures
Cited by: 43
Author(s): Katleen Robert, Veerle A.I. Huvenne, Aggeliki Georgiopoulou, Daniel O. B. Jones, Leigh Marsh, Gareth Carter, Leo Chaumillon
Software Mentions: 9
Published: over 7 years ago

10.1177/1179546820951793

Carotid Plaque Morphology is Similar in Patients with Reduced and Normal Renal Function
Cited by: 1
Author(s): Caroline Heijl, Fredrik Kahn, Andreas Edsfeldt, Christoffer Tengryd, Jan Nilsson, Isabel Gonçalves
Software Mentions: 9
Published: almost 5 years ago

10.1002/mbo3.780

Biases in the metabarcoding of plant pathogens using rust fungi as a model system
Cited by: 13
Author(s): Andreas Makiola, Ian A. Dickie, Robert J. Holdaway, Jamie R. Wood, Kate H. Orwin, Charles K. Lee, Travis R. Glare
Software Mentions: 9
Published: almost 6 years ago

10.1371/journal.pone.0209402

Assessing the potential for competition between Pacific Halibut (Hippoglossus stenolepis) and Arrowtooth Flounder (Atheresthes stomias) in the Gulf of Alaska
Cited by: 6
Author(s): Cheryl L. Barnes, Anne H. Beaudreau, Mary E. Hunsicker, Lorenzo Ciannelli
Software Mentions: 9
Published: about 6 years ago

10.1038/s41598-018-35306-6

Individual variability in diving, movement and activity patterns of adult bearded seals in Svalbard, Norway
Cited by: 21
Author(s): Charmain D. Hamilton, Kit M. Kovacs, Christian Lydersen
Software Mentions: 9
Published: about 6 years ago

10.3390/ani11092708

Patterns of Exposure and Infection with Microparasites in Iberian Wild Carnivores: A Review and Meta-Analysis
Cited by: 0
Author(s): Javier Millán, Daniel J. Becker
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pone.0240218

Spatio-temporal modeling of visceral leishmaniasis in Midwest Brazil: An ecological study of 18-years data (2001–2018)
Cited by: 5
Author(s): Everton Falcão de Oliveira, Alessandra Gutierrez de Oliveira, Carla Cardozo Pinto de Arruda, Wagner de Souza Fernandes, Márcio José de Medeiros
Software Mentions: 9
Published: about 4 years ago

10.1371/journal.pone.0236856

The macroecology of the COVID-19 pandemic in the Anthropocene
Cited by: 32
Author(s): Piotr Skórka, Beata Grzywacz, Dawid Moroń, Magdalena Lenda
Software Mentions: 9
Published: over 4 years ago

10.1371/journal.pone.0071476

Sleepless in Town – Drivers of the Temporal Shift in Dawn Song in Urban European Blackbirds
Cited by: 90
Author(s): Anja Nordt, Reinhard Klenke
Software Mentions: 9
Published: over 11 years ago

10.1371/journal.pcbi.1008205

Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data
Cited by: 43
Author(s): Tony Tran, Gary D. Bader
Software Mentions: 8
Published: over 4 years ago

10.3389/fpsyg.2019.02597

Native Language Influence on Brass Instrument Performance: An Application of Generalized Additive Mixed Models (GAMMs) to Midsagittal Ultrasound Images of the Tongue
Cited by: 9
Author(s): Matthias Heyne, Donald Derrick, Jalal Al-Tamimi
Software Mentions: 8
Published: about 5 years ago

10.1371/journal.pone.0216270

Butterfly abundance declines over 20 years of systematic monitoring in Ohio, USA
Cited by: 138
Author(s): Tyson Wepprich, Jeffrey R. Adrion, Leslie Ries, Jerome Wiedmann, Nick M. Haddad
Software Mentions: 8
Published: over 5 years ago

10.1093/plankt/fbz063

Environmental variables driving species and genus level changes in annual plankton biomass
Cited by: 5
Author(s): Louise Forsblom, Jonna Engström‐Öst, Sirpa Lehtinen, Inga Lips, Andreas Lindén
Software Mentions: 8
Published: about 5 years ago

10.1186/s12859-020-3506-x

Negative binomial additive model for RNA-Seq data analysis
Cited by: 16
Author(s): Ruwei Xu, Pei Fen Kuan
Software Mentions: 8
Published: over 4 years ago

10.1038/s41598-020-73579-y

Environmental influences on foraging effort, success and efficiency in female Australian fur seals
Cited by: 12
Author(s): Cassie N. Speakman, Andrew J. Hoskins, Mark A. Hindell, Daniel P. Costa, Jason R. Hartog, Alistair J. Hobday, John P. Y. Arnould
Software Mentions: 8
Published: about 4 years ago

10.1002/ece3.5283

Circadian rhythms enable efficient resource selection in a human‐modified landscape
Cited by: 6
Author(s): Manuela Fischer, Julian Di Stefano, Pierre Gras, Stephanie Kramer‐Schadt, Duncan R. Sutherland, Geoff Coulson, Milena Stillfried
Software Mentions: 8
Published: over 5 years ago

10.1371/journal.pone.0076507

North Atlantic Blue and Fin Whales Suspend Their Spring Migration to Forage in Middle Latitudes: Building up Energy Reserves for the Journey?
Cited by: 120
Author(s): Mónica Silva, Rui Prieto, Ian D. Jonsen, Mark F. Baumgartner, Ricardo S. Santos
Software Mentions: 8
Published: about 11 years ago

10.3390/cells8080920

The Snapdragon LATE ELONGATED HYPOCOTYL Plays A Dual Role in Activating Floral Growth and Scent Emission
Cited by: 9
Author(s): Marta I. Terry, Fernando Pérez-Sánz, Pedro J. Navarro, Julia Weiß, Marcos Egea‐Cortines
Software Mentions: 8
Published: over 5 years ago

10.1093/cercor/bhaa348

The Functional Foundations of Episodic Memory Remain Stable Throughout the Lifespan
Cited by: 3
Author(s): Didac Vidal‐Piñeiro, Markus Handal Sneve, Inge K. Amlien, Håkon Grydeland, Athanasia M. Mowinckel, James M Roe, Øystein Sørensen, Lars Nyberg, Kristine B. Walhovd, Anders M. Fjell
Software Mentions: 8
Published: about 4 years ago

10.1186/s40462-020-0191-3

Active acoustic telemetry tracking and tri-axial accelerometers reveal fine-scale movement strategies of a non-obligate ram ventilator
Cited by: 17
Author(s): Emily N. Meese, Christopher G. Lowe
Software Mentions: 8
Published: almost 5 years ago

10.1371/journal.pone.0229689

Population dynamics and biological feasibility of sustainable harvesting as a conservation strategy for tropical and temperate freshwater turtles
Cited by: 11
Author(s): Angga Rachmansah, D. Ryan Norris, James P. Gibbs
Software Mentions: 8
Published: almost 5 years ago

10.1016/j.ekir.2021.04.002

Anti-PLA2R1 Antibodies as Prognostic Biomarker in Membranous Nephropathy
Cited by: 16
Author(s): Anne-Els van de Logt, Joana Justino, Coralien H. Vink, Jan van den Brand, Hanna Dębiec, Gérard Lambeau, Jack F.M. Wetzels
Software Mentions: 8
Published: over 3 years ago

10.1371/journal.pone.0256038

Exogenous corticosterone and melanin-based coloration explain variation in juvenile dispersal behaviour in the barn owl (Tyto alba)
Cited by: 3
Author(s): Bettina Almasi, Carolina Massa, Lukas Jenni, Alexandre Roulin
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pone.0175545

Functional decay in tree community within tropical fragmented landscapes: Effects of landscape-scale forest cover
Cited by: 49
Author(s): Larissa Rocha‐Santos, Maíra Benchimol, Margaret M. Mayfield, Deborah Faria, Michaele S. Pessoa, Daniela Custódio Talora, Eduardo Mariano‐Neto, Eliana Cazetta
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0256068

Parasitism to mutualism continuum for Joshua trees inoculated with different communities of arbuscular mycorrhizal fungi from a desert elevation gradient
Cited by: 5
Author(s): Jennifer Harrower, Gregory S. Gilbert
Software Mentions: 7
Published: over 3 years ago

10.1186/s12940-020-00644-4

A family of partial-linear single-index models for analyzing complex environmental exposures with continuous, categorical, time-to-event, and longitudinal health outcomes
Cited by: 7
Author(s): Yuyan Wang, Yinxiang Wu, Melanie H. Jacobson, Myeonggyun Lee, Peng Jin, Leonardo Trasande, Mengling Liu
Software Mentions: 7
Published: over 4 years ago

10.1371/journal.pone.0086986

Revealing Individual Signatures of Human T Cell CDR3 Sequence Repertoires with Kidera Factors
Cited by: 9
Author(s): Michael Epstein, Martino Barenco, Nigel Klein, Michael Hubank, Robin E. Callard
Software Mentions: 7
Published: almost 11 years ago

10.1038/s41598-021-95302-1

The implications of lag times between nitrate leaching losses and riverine loads for water quality policy
Cited by: 12
Author(s): R. W. McDowell, Zachary P. Simpson, Anne-Gäelle Ausseil, Z. Etheridge, Richard M. Law
Software Mentions: 7
Published: over 3 years ago

10.1111/mec.13928

Local adaptation at higher trophic levels: contrasting hyperparasite-pathogen infection dynamics in the field and laboratory
Cited by: 20
Author(s): Steven R. Parratt, Benoît Barrès, Rachel M. Penczykowski, Anna‐Liisa Laine
Software Mentions: 7
Published: almost 8 years ago

10.1002/ece3.8085

Identifying existing management practices in the control of Striga asiatica within rice–maize systems in mid‐west Madagascar
Cited by: 6
Author(s): Donald Scott, Julie D. Scholes, Meva Tahiry Randrianjafizanaka, Jean Augustin Randriamampianina, Patrice Autfray, Robert P. Freckleton
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-017-13252-z

Effects of vessel traffic and underwater noise on the movement, behaviour and vocalisations of bottlenose dolphins in an urbanised estuary
Cited by: 52
Author(s): Sarah A. Marley, Chandra Salgado Kent, Christine Erbe, Iain Parnum
Software Mentions: 7
Published: about 7 years ago

10.1371/journal.pone.0187742

Increased sediment load during a large-scale dam removal changes nearshore subtidal communities
Cited by: 26
Author(s): Stephen P. Rubin, Ian Miller, Melissa M. Foley, Helen Berry, Jeffrey J. Duda, Benjamin Hudson, Nancy Elder, Matthew M. Beirne, Jonathan A. Warrick, Michael L. McHenry, Andrew W. Stevens, Emily Eidam, A. S. Ogston, Guy Gelfenbaum, Rob Pedersen
Software Mentions: 7
Published: about 7 years ago

10.1002/ece3.7777

Fine‐scale movements and behaviors of coyotes (Canis latrans) during their reproductive period
Cited by: 5
Author(s): Michael J. Chamberlain, Bradley S. Cohen, Patrick H. Wightman, Emily Rushton, Joseph W. Hinton
Software Mentions: 7
Published: over 3 years ago

10.1002/ece3.5852

Investigating the environmental drivers of deep‐seafloor biodiversity: A case study of peracarid crustacean assemblages in the Northwest Atlantic Ocean
Cited by: 13
Author(s): Oliver S. Ashford, Andrew Kenny, Christopher R.S. Barrio Froján, Tammy Horton, Alex D. Rogers
Software Mentions: 7
Published: about 5 years ago

10.1186/s40168-015-0116-3

Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities
Cited by: 151
Author(s): Aleksandra Checinska, Alexander J. Probst, Parag Vaishampayan, James R. White, Deepika Kumar, В. П. Степанов, George E. Fox, R. Henrik Nilsson, Duane L. Pierson, Jay L. Perry, Kasthuri Venkateswaran
Software Mentions: 7
Published: about 9 years ago

10.1002/ece3.4134

A simple function for full-subsets multiple regression in ecology with R
Cited by: 103
Author(s): Rebecca Fisher, Shaun K. Wilson, Tsai Min Sin, Ai C. Lee, Tim Langlois
Software Mentions: 7
Published: over 6 years ago

10.1038/s41598-017-03503-4

Fuel loads acquired at a stopover site influence the pace of intercontinental migration in a boreal songbird
Cited by: 80
Author(s): Camila Gómez, Nicholas J. Bayly, D. Ryan Norris, Stuart A. Mackenzie, Kenneth V. Rosenberg, Philip D. Taylor, Keith A. Hobson, Carlos Daniel Cadena
Software Mentions: 7
Published: over 7 years ago

10.7717/peerj.7233

An artificial-vision- and statistical-learning-based method for studying the biodegradation of type I collagen scaffolds in bone regeneration systems
Cited by: 9
Author(s): Y. Robles-Bykbaev, Salvador Naya, Silvia Díaz‐Prado, D. Calle-Lopez, Vladimir Robles-Bykbaev, Luis Garzón, Clara Sanjurjo‐Rodríguez, Javier Tarrío-Saavedra
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pntd.0008333

Spatial epidemiology of Japanese encephalitis virus and other infections of the central nervous system infections in Lao PDR (2003–2011): A retrospective analysis
Cited by: 2
Author(s): Sayaphet Rattanavong, Audrey Dubot‐Pérès, Mayfong Mayxay, Manivanh Vongsouvath, Sue J. Lee, Julien Cappelle, Paul N. Newton, Daniel M. Parker
Software Mentions: 7
Published: over 4 years ago

10.7717/peerj.7863

Manx shearwater (Puffinus puffinus) rafting behaviour revealed by GPS tracking and behavioural observations
Cited by: 6
Author(s): Cerren Richards, Oliver Padget, Tim Guilford, Amanda E. Bates
Software Mentions: 7
Published: about 5 years ago

10.1093/conphys/coab075

Sportive lemurs elevate their metabolic rate during challenging seasons and do not enter regular heterothermy
Cited by: 3
Author(s): Janina Bethge, Jean Claude Razafimampiandra, Arne Wulff, Kathrin H. Dausmann
Software Mentions: 7
Published: almost 4 years ago

10.1002/ece3.2762

Context‐dependent functional dispersion across similar ranges of trait space covered by intertidal rocky shore communities
Cited by: 25
Author(s): Nelson Valdivia, V. Segovia-Rivera, Eliseo Fica, César C. Bonta, Moisés A. Aguilera, Bernardo R. Broitman
Software Mentions: 7
Published: almost 8 years ago

10.1111/1365-2656.12178

Building integral projection models: a user's guide
Cited by: 113
Author(s): Mark Rees, Dylan Z. Childs, Stephen P. Ellner
Software Mentions: 7
Published: almost 11 years ago

10.1186/s13071-015-1086-9

Spatiotemporal variation of mosquito diversity (Diptera: Culicidae) at places with different land-use types within a neotropical montane cloud forest matrix
Cited by: 52
Author(s): Carlos Antonio Abella-Medrano, Sergio Ibáñez-Bernal, Ian MacGregor-Fors, Diego Santiago‐Alarcon
Software Mentions: 7
Published: about 9 years ago

10.1186/s40168-016-0167-0

Microbial succession in an inflated lunar/Mars analog habitat during a 30-day human occupation
Cited by: 28
Author(s): Teresa Mayer, Adriana Blachowicz, Alexander J. Probst, Parag Vaishampayan, Aleksandra Checinska, Tiffany M. Swarmer, Pablo de León, Kasthuri Venkateswaran
Software Mentions: 7
Published: over 8 years ago

10.1186/s40168-017-0280-8

Human presence impacts fungal diversity of inflated lunar/Mars analog habitat
Cited by: 23
Author(s): Adriana Blachowicz, Teresa Mayer, Mina Bashir, Thomas R. Pieber, Pablo de León, Kasthuri Venkateswaran
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pntd.0005729

Dengue prediction by the web: Tweets are a useful tool for estimating and forecasting Dengue at country and city level
Cited by: 70
Author(s): Cecilia Marques-Toledo, Carolin Marlen Degener, Livia Vinhal, Giovanini Evelim Coelho, Wagner Meira, Cláudia Torres Codeço, Mauro Martins Teixeira
Software Mentions: 7
Published: over 7 years ago

10.1371/journal.pone.0106150

Towards Monitoring Biodiversity in Amazonian Forests: How Regular Samples Capture Meso-Scale Altitudinal Variation in 25 km2 Plots
Cited by: 9
Author(s): D. Ryan Norris, Marie‐Josée Fortin, William E. Magnusson
Software Mentions: 7
Published: over 10 years ago

10.1111/1365-2656.13069

Environmental degradation amplifies species’ responses to temperature variation in a trophic interaction
Cited by: 4
Author(s): Marianne Mugabo, David Gilljam, Laura Petteway, Yuan Chen, Mike S. Fowler, Steven M. Sait
Software Mentions: 7
Published: over 5 years ago

10.1371/journal.pone.0253095

Year-round at-sea distribution and trophic resources partitioning between two sympatric Sulids in the tropical Atlantic
Cited by: 6
Author(s): Nathalie Almeida, Jaime A. Ramos, Isabel Rodrigues, Ivo dos Santos, Jorge M. Pereira, Diana M. Matos, Pedro Araújo, Pedro Geraldes, Tommy Melo, Vítor H. Paiva
Software Mentions: 7
Published: over 3 years ago

10.1038/s41598-021-87577-1

Cetacean distribution models based on visual and passive acoustic data
Cited by: 11
Author(s): Kaitlin E. Frasier, Lance P. Garrison, Melissa S. Soldevilla, Sean M. Wiggins, John A. Hildebrand
Software Mentions: 7
Published: over 3 years ago

10.1371/journal.pbio.2003903

Genome-wide maps of ribosomal occupancy provide insights into adaptive evolution and regulatory roles of uORFs during Drosophila development
Cited by: 62
Author(s): Hong Zhang, Shengqian Dou, Feng He, Junjie Luo, Liping Wei, Jian Lü
Software Mentions: 6
Published: over 6 years ago

10.1371/journal.pone.0201786

Multi-scale habitat preference analyses for Azorean blue whales
Cited by: 18
Author(s): Luis Pericot García, Graham J. Pierce, Emmanuelle Autret, Jesús Manuel Torres Palenzuela
Software Mentions: 6
Published: about 6 years ago

10.1371/journal.pone.0155477

Risk Factors for Seabird Bycatch in a Pelagic Longline Tuna Fishery
Cited by: 30
Author(s): Eric Gilman, Milani Chaloupka, John Peschon, Sarah Ellgen
Software Mentions: 6
Published: over 8 years ago

10.1371/journal.pone.0212668

Determinants of the little auk (Alle alle) breeding colony location and size in W and NW coast of Spitsbergen
Cited by: 28
Author(s): Liliana Katarzyna Keslinka, Katarzyna Wojczulanis‐Jakubas, Dariusz Jakubas, Grzegorz Neubauer
Software Mentions: 6
Published: almost 6 years ago

Projects: cran: mgcv

Papers Mentioning mgcv 1,251