Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1008205

https://doi.org/10.1371/journal.pcbi.1008205

Tempora: Cell trajectory inference using time-series single-cell RNA sequencing data

Cited by: 43
Author(s): Tony Tran, Gary D. Bader
Published: over 4 years ago

Software Mentions 8

bioconductor: GSVA
Gene Set Variation Analysis for microarray and RNA-seq data
Papers that mentioned: 893
bioconductor: TSCAN
Tools for Single-Cell Analysis
Papers that mentioned: 49
cran: mgcv
Mixed GAM Computation Vehicle with Automatic Smoothness Estimation
Papers that mentioned: 1,251
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: Temporal
Parametric Time to Event Analysis
Papers that mentioned: 6
pypi: GSVA
Python CLI and module for running the GSVA R bioconductor package with Python Pandas inputs and outputs.
Papers that mentioned: 893
pypi: Harmony
Harmony Programming Language
Papers that mentioned: 504
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779