Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1008866

https://doi.org/10.1371/journal.pgen.1008866

Cited by: 119
Author(s): Marie Touchon, Perrin Amandine, Jorge Moura de Sousa, Belinda Vangchhia, Samantha Burn, Claire O’Brien, Erick Denamur, David M. Gordon, Eduardo P. C. Rocha
Published: almost 4 years ago

Software Mentions 16

cran: ANOM

Analysis of Means
Papers that mentioned: 20

cran: corrplot

Visualization of a Correlation Matrix
Papers that mentioned: 1,077

cran: igraph

Network Analysis and Visualization
Papers that mentioned: 1,555

cran: mgcv

Mixed GAM Computation Vehicle with Automatic Smoothness Estimation
Papers that mentioned: 1,251

cran: micropan

Microbial Pan-Genome Analysis
Papers that mentioned: 19

cran: phytools

Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586

cran: PopGenome

An Efficient Swiss Army Knife for Population Genomic Analyses
Papers that mentioned: 62

cran: vegan

Community Ecology Package
Papers that mentioned: 6,903

pypi: barrnap

python package for barrnap
Papers that mentioned: 56

pypi: hmmer

HMMER binaries.
Papers that mentioned: 196

pypi: igraph

High performance graph data structures and algorithms
Papers that mentioned: 1,555

pypi: infernal

Core library for the Infernal eSports Analytics Infernal library.
Papers that mentioned: 54

pypi: PACE

Data Quality of Experimental Data
Papers that mentioned: 13,779

pypi: package

package is a package to package your package
Papers that mentioned: 1,300

pypi: phytools

Useful tools for physicists.
Papers that mentioned: 586

pypi: stats

Calculator-style statistical functions
Papers that mentioned: 3,105