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Papers

Papers: 10.1371/journal.pgen.1008866

https://doi.org/10.1371/journal.pgen.1008866

Phylogenetic background and habitat drive the genetic diversification of Escherichia coli

Cited by: 119
Author(s): Marie Touchon, Perrin Amandine, Jorge Moura de Sousa, Belinda Vangchhia, Samantha Burn, Claire O’Brien, Erick Denamur, David M. Gordon, Eduardo P. C. Rocha
Published: over 6 years ago

Software Mentions 16

cran: ANOM
Analysis of Means
Papers that mentioned: 20
Very Likely Science (100)
cran: corrplot
Visualization of a Correlation Matrix
Papers that mentioned: 1,077
Very Likely Science (100)
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
Very Likely Science (100)
cran: mgcv
Mixed GAM Computation Vehicle with Automatic Smoothness Estimation
Papers that mentioned: 1,251
Very Likely Science (75)
cran: micropan
Microbial Pan-Genome Analysis
Papers that mentioned: 19
Very Likely Science (85)
cran: phytools
Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586
Very Likely Science (100)
cran: PopGenome
An Efficient Swiss Army Knife for Population Genomic Analyses
Papers that mentioned: 62
Very Likely Science (75)
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
Very Likely Science (100)
pypi: barrnap
python package for barrnap
Papers that mentioned: 56
Very Likely Science (80)
pypi: hmmer
HMMER binaries.
Papers that mentioned: 196
Very Likely Science (90)
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
Very Likely Science (100)
pypi: infernal
Core library for the Infernal eSports Analytics Infernal library.
Papers that mentioned: 54
Likely Science (40)
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
Very Likely Science (90)
pypi: package
package is a package to package your package
Papers that mentioned: 1,300
Very Likely Science (65)
pypi: phytools
Useful tools for physicists.
Papers that mentioned: 586
Very Likely Science (80)
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
Very Likely Science (90)