An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s40168-020-00914-w

https://doi.org/10.1186/s40168-020-00914-w

Faecal microbiota transplant from aged donor mice affects spatial learning and memory via modulating hippocampal synaptic plasticity- and neurotransmission-related proteins in young recipients

Cited by: 118
Author(s): Alfonsina D’Amato, Lorenzo Mannelli, Elena Lucarini, Angela L. Man, Gwénaëlle Le Gall, Jacopo Junio Valerio Branca, Carla Ghelardini, Amedeo Amedei, Eugenio Bertelli, Marì Regoli, Alessandra Pacini, Giulia Luciani, Pasquale Gallina, Annalisa Altera, Arjan Narbad, Massimo Gulisano, Lesley Hoyles, David Vauzour, Claudio Nicoletti
Published: almost 5 years ago

Software Mentions 14

bioconductor: ALDEx2
Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account
Papers that mentioned: 136
Very Likely Science (100)
bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
Very Likely Science (100)
bioconductor: GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328
Very Likely Science (100)
bioconductor: msa
Multiple Sequence Alignment
Papers that mentioned: 50
Very Likely Science (90)
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
Very Likely Science (75)
cran: Andromeda
Asynchronous Disk-Based Representation of Massive Data
Papers that mentioned: 1,724
Very Likely Science (85)
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
Very Likely Science (85)
cran: phangorn
Phylogenetic Reconstruction and Analysis
Papers that mentioned: 192
Very Likely Science (100)
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
Very Likely Science (100)
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
Very Likely Science (100)
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
Very Likely Science (100)
pypi: msa
Maven settings administrator
Papers that mentioned: 50
Very Likely Science (65)
pypi: Silva
Silva Content Management System
Papers that mentioned: 445
Likely Science (40)
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92
Very Likely Science (100)