Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s40168-020-00914-w

https://doi.org/10.1186/s40168-020-00914-w

Cited by: 118
Author(s): Alfonsina D’Amato, Lorenzo Mannelli, Elena Lucarini, Angela L. Man, Gwénaëlle Le Gall, Jacopo Junio Valerio Branca, Carla Ghelardini, Amedeo Amedei, Eugenio Bertelli, Marì Regoli, Alessandra Pacini, Giulia Luciani, Pasquale Gallina, Annalisa Altera, Arjan Narbad, Massimo Gulisano, Lesley Hoyles, David Vauzour, Claudio Nicoletti
Published: over 3 years ago

Software Mentions 14

bioconductor: ALDEx2
Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account
Papers that mentioned: 136
bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
bioconductor: GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328
bioconductor: msa
Multiple Sequence Alignment
Papers that mentioned: 50
bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: Andromeda
Asynchronous Disk-Based Representation of Massive Data
Papers that mentioned: 1,724
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: phangorn
Phylogenetic Reconstruction and Analysis
Papers that mentioned: 192
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
pypi: msa
Maven settings administrator
Papers that mentioned: 50
pypi: Silva
Silva Content Management System
Papers that mentioned: 445
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92