cran: Andromeda | Projects | Ecosyste.ms: Papers

10.3389/fimmu.2021.616967

A Multi-Omics Analysis of Mucosal-Associated-Invariant T Cells Reveals Key Drivers of Distinct Modes of Activation
Cited by: 12
Author(s): Kristin Schubert, Isabel Karkossa, Jana Schor, Beatrice Engelmann, Lisa Maria Steinheuer, Tony Bruns, Ulrike Rolle-Kampczyk, Jörg Hackermüller, Martin von Bergen
Software Mentions: 24
Published: almost 3 years ago

10.15252/msb.20199247

<scp>STAT</scp> 3 ‐dependent analysis reveals <scp>PDK</scp> 4 as independent predictor of recurrence in prostate cancer
Cited by: 34
Author(s): Monika Oberhuber, Matteo Pecoraro, Mate Rusz, Georg Oberhuber, Maritta Wieselberg, Peter Haslinger, Elisabeth Gurnhofer, Michaela Schlederer, Tanja Limberger, Sabine Lagger, Jan Pěnčík, Petra Kodajova, Sandra Högler, Georg Stockmaier, Sandra Grund-Gröschke, Fritz Aberger, Marco Bolis, Jean-Philippe Theurillat, Robert Wiebringhaus, Theresa R. Weiss, Andrea Haitel, Marc Brehme, Wolfgang Wadsak, Johannes Griss, Thomas Mohr, Alexandra Hofer, Anton Jäger, Jürgen Pollheimer, Gerda Egger, Gunda Koellensperger, Matthias Mann, Brigitte Hantusch, Lukas Kenner
Software Mentions: 21
Published: about 4 years ago

10.1016/j.molcel.2021.05.023

Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infection
Cited by: 87
Author(s): Wael Kamel, Marko Noerenberg, Berati Cerikan, Honglin Chen, Aino I Järvelin, Mohamed Kammoun, Young Seok Lee, Shuai Ni, Manuel García-Moreno, Anna Andrejeva, Michael J. Deery, Natasha Johnson, Christopher J Neufeldt, Mirko Cortese, Michael Knight, Kathryn S. Lilley, Javier Martı̂nez, Ilan Davis, Ralf Bartenschlager, Shabaz Mohammed, Alfredo Castelló
Software Mentions: 18
Published: about 3 years ago

10.1186/s40168-020-00914-w

Faecal microbiota transplant from aged donor mice affects spatial learning and memory via modulating hippocampal synaptic plasticity- and neurotransmission-related proteins in young recipients
Cited by: 118
Author(s): Alfonsina D’Amato, Lorenzo Mannelli, Elena Lucarini, Angela L. Man, Gwénaëlle Le Gall, Jacopo Junio Valerio Branca, Carla Ghelardini, Amedeo Amedei, Eugenio Bertelli, Marì Regoli, Alessandra Pacini, Giulia Luciani, Pasquale Gallina, Annalisa Altera, Arjan Narbad, Massimo Gulisano, Lesley Hoyles, David Vauzour, Claudio Nicoletti
Software Mentions: 14
Published: over 3 years ago

10.3390/ijms20174162

SILAC-Based Quantification of TGFBR2-Regulated Protein Expression in Extracellular Vesicles of Microsatellite Unstable Colorectal Cancers
Cited by: 13
Author(s): Fabia Fricke, Malwina Michalak, Uwe Warnken, Ingrid Haußer, Martina Schnölzer, Jürgen Kopitz, Johannes Gebert
Software Mentions: 14
Published: over 4 years ago

10.3390/cancers12030692

Hypoxia-Induced Adaptations of miRNomes and Proteomes in Melanoma Cells and Their Secreted Extracellular Vesicles
Cited by: 29
Author(s): Geoffroy Walbrecq, Odile Lecha, Anthoula Gaigneaux, Miriam Rebecca Fougeras, Demetra Philippidou, Christiane Margue, Miléne Tetsi Nomigni, François Bernardin, Gunnar Dittmar, Iris Behrmann, Stephanie Kreis
Software Mentions: 11
Published: about 4 years ago

10.1186/s40478-018-0548-7

Proteomic analysis of Medulloblastoma reveals functional biology with translational potential
Cited by: 35
Author(s): Samuel Rivero-Hinojosa, Ling San Lau, Mojca Stampar, Jerome A. Staal, Huizhen Zhang, Heather Gordish‐Dressman, Paul A. Northcott, Stefan M. Pfister, Michael D. Taylor, Kristy J. Brown, Brian R. Rood
Software Mentions: 10
Published: almost 6 years ago

10.1371/journal.ppat.1007945

Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype
Cited by: 28
Author(s): Bernd Hommel, Aude Sturny-Leclère, Stevenn Volant, Nathanaël Veluppillai, Magalie Duchateau, Chen-Hsin Albert Yu, Véronique Hourdel, Hugo Varet, Mariette Matondo, John R. Perfect, Arturo Casadevall, Françoise Dromer, Alexandre Alanio
Software Mentions: 10
Published: almost 5 years ago

10.1038/s41598-020-72569-4

Abiotic and past climatic conditions drive protein abundance variation among natural populations of the caddisfly Crunoecia irrorata
Cited by: 2
Author(s): Joshua Niklas Ebner, Danilo Ritz, Stefanie von Fumetti
Software Mentions: 9
Published: over 3 years ago

10.3389/fpls.2014.00078

Plasma membrane lipidâ€“protein interactions affect signaling processes in sterol-biosynthesis mutants in Arabidopsis thaliana
Cited by: 24
Author(s): Henrik Zauber, Asdrúbal Burgos, Prashanth Garapati, Waltraud X. Schulze
Software Mentions: 9
Published: about 10 years ago

10.1371/journal.pone.0199274

Metaproteomics reveals potential mechanisms by which dietary resistant starch supplementation attenuates chronic kidney disease progression in rats
Cited by: 25
Author(s): Boris Zybailov, Galina Glazko, Yasir Rahmatallah, Dmitri S. Andreyev, Taylor McElroy, Oleg Karaduta, Stephanie D. Byrum, Lisa Orr, Alan J. Tackett, Samuel G. Mackintosh, Ricky D. Edmondson, Dorothy A. Kieffer, Roy J. Martin, Sean H. Adams, Nosratola D. Vaziri, John M. Arthur
Software Mentions: 9
Published: over 5 years ago

10.1186/1471-2164-13-556

Proteome remodelling during development from blood to insect-form Trypanosoma brucei quantified by SILAC and mass spectrometry
Cited by: 117
Author(s): Kapila Gunasekera, Daniel Wüthrich, Sophie Braga-Lagache, Manfred Heller, Torsten Ochsenreiter
Software Mentions: 8
Published: over 11 years ago

10.3390/molecules26123564

Differential Glycosite Profiling—A Versatile Method to Compare Membrane Glycoproteomes
Cited by: 0
Author(s): Malwina Michalak, Martin Simon Kalteis, Aysel Ahadova, Matthias Kloor, Mark Kriegsmann, Katharina Kriegsmann, Uwe Warnken, Dominic Helm, Jürgen Kopitz
Software Mentions: 8
Published: almost 3 years ago

10.15252/msb.20188503

A deep proteome and transcriptome abundance atlas of 29 healthy human tissues
Cited by: 479
Author(s): Dongxue Wang, Basak Eraslan, Thomas Wieland, Björn M. Hallström, Thomas A. Hopf, Daniel Paul Zolg, Jana Zecha, Anna Asplund, Lihua Li, Chen Meng, Martin Frejno, Tobias Schmidt, Karsten Schnatbaum, Mathias Wilhelm, Fredrik Pontén, Mathias Uhlén, Julien Gagneur, Hannes Hahne, Bernhard Küster
Software Mentions: 8
Published: over 5 years ago

10.15252/emmm.202012871

Integrative analysis of cell state changes in lung fibrosis with peripheral protein biomarkers
Cited by: 40
Author(s): Christoph H. Mayr, Lukas M. Simon, Gabriela Leuschner, Meshal Ansari, Janine Schniering, Philipp Geyer, Ilias Angelidis, Maximilian Strunz, Pawandeep Singh, Nikolaus Kneidinger, Frank Reichenberger, Edith Silbernagel, Stephan Böhm, Heiko Adler, Michael Lindner, Britta Maurer, Anne Hilgendorff, Antje Prasse, Jürgen Behr, Matthias Mann, Oliver Eickelberg, Fabian J. Theis, Herbert B. Schiller
Software Mentions: 8
Published: about 3 years ago

10.15252/embj.2020105565

The RNA polymerase II subunit RPB‐9 recruits the integrator complex to terminate Caenorhabditis elegans piRNA transcription
Cited by: 13
Author(s): Ahmet C. Berkyurek, Giulia Furlan, Lisa Lampersberger, Toni Beltran, Eva-Maria Weick, Emily Nischwitz, Isabela Cunha Navarro, Fabian Braukmann, Alper Akay, Jonathan Price, Falk Butter, Peter Sarkies, Eric A. Miska
Software Mentions: 7
Published: over 3 years ago

10.7554/eLife.30952

Transcriptomic and proteomic landscape of mitochondrial dysfunction reveals secondary coenzyme Q deficiency in mammals
Cited by: 158
Author(s): Inge Kühl, María Miranda, Ilian Atanassov, Irina Kuznetsova, Yvonne Hinze, Arnaud Mourier, Aleksandra Filipovska, Nils‐Göran Larsson
Software Mentions: 7
Published: over 6 years ago

10.1016/j.devcel.2017.07.002

The Helicase Aquarius/EMB-4 Is Required to Overcome Intronic Barriers to Allow Nuclear RNAi Pathways to Heritably Silence Transcription
Cited by: 59
Author(s): Alper Akay, Tomás Di Domenico, Kin Man Suen, Amena Nabih, Guillermo E. Parada, Mark Larance, Ragini Medhi, Ahmet C. Berkyurek, Xinlian Zhang, Christopher J. Wedeles, Konrad L. M. Rudolph, Jan Engelhardt, Martin Hemberg, Ping Ma, Angus I. Lamond, Julie M. Claycomb, Eric A. Miska
Software Mentions: 7
Published: almost 7 years ago

10.1016/j.jprot.2018.08.013

Proteomic comparison of selective breeding and growth hormone transgenesis in fish: Unique pathways to enhanced growth
Cited by: 29
Author(s): Dwight R. Causey, Jin-Hyoung Kim, David Stead, Samuel Martín, Robert H. Devlin, Daniel J. Macqueen
Software Mentions: 7
Published: over 5 years ago

10.1016/j.molcel.2020.09.021

Stress-Induced Translation Inhibition through Rapid Displacement of Scanning Initiation Factors
Cited by: 49
Author(s): Stefan Bresson, Vadim Shchepachev, Christos Spanos, Tomasz W. Turowski, Juri Rappsilber, David Tollervey
Software Mentions: 7
Published: over 3 years ago

10.1016/j.molcel.2019.01.017

System-wide Profiling of RNA-Binding Proteins Uncovers Key Regulators of Virus Infection
Cited by: 122
Author(s): Manuel García-Moreno, Marko Noerenberg, Shuai Ni, Aino I Järvelin, Esther González-Almela, Caroline E. Lenz, Marcel Bach-Pagés, Victoria Cox, Rosario Avolio, Thomas W. Davis, Svenja Hester, Thibault J.M. Sohier, Bingnan Li, Gregory Heikel, Gracjan Michlewski, Miguel Á. Sanz, Luís Carrasco, Emiliano P. Ricci, Vicent Pelechano, Ilan Davis, Bernd Fischer, Shabaz Mohammed, Alfredo Castelló
Software Mentions: 7
Published: about 5 years ago

10.1016/j.molcel.2020.01.007

Mammalian RNA Decay Pathways Are Highly Specialized and Widely Linked to Translation
Cited by: 74
Author(s): Alex Tuck, Aneliya Rankova, Alaaddin Bulak Arpat, Luz Angélica Liechti, Daniel Heß, Vytautas Iešmantavičius, Violeta Castelo-Szekely, David Gatfield, Marc Bühler
Software Mentions: 7
Published: about 4 years ago

10.3389/fimmu.2020.578505

Preparing for Life: Plasma Proteome Changes and Immune System Development During the First Week of Human Life
Cited by: 18
Author(s): Tue Bjerg Bennike, Benoit Fatou, Asimenia Angelidou, Joann Diray‐Arce, Reza Falsafi, Rebecca Ford, Erin E. Gill, Simon D. van Haren, Olubukola T. Idoko, Ahwon Lee, Rym Ben‐Othman, William Pomat, Casey P. Shannon, Kinga K. Smolen, Scott J. Tebbutt, Al Ozonoff, Peter Richmond, Anita H. J. van den Biggelaar, Robert E. W. Hancock, Beate Kampmann, Tobias R. Kollmann, Ofer Levy, Hanno Steen
Software Mentions: 7
Published: over 3 years ago

10.15252/msb.20188689

Defining the <scp>RNA</scp> interactome by total <scp>RNA</scp> ‐associated protein purification
Cited by: 103
Author(s): Vadim Shchepachev, Stefan Bresson, Christos Spanos, Elisabeth Petfalski, Lutz Fischer, Juri Rappsilber, David Tollervey
Software Mentions: 7
Published: about 5 years ago

10.26508/lsa.201800085

Transcriptional repression by FACT is linked to regulation of chromatin accessibility at the promoter of ES cells
Cited by: 29
Author(s): Constantine Mylonas, Peter Tessarz
Software Mentions: 7
Published: almost 6 years ago

10.1186/s12864-017-3683-9

Reduced changes in protein compared to mRNA levels across non-proliferating tissues
Cited by: 72
Author(s): Kobi Perl, Kathy Ushakov, Yair Pozniak, Ofer Yizhar-Barnea, Yoni Bhonker, Shaked Shivatzki, Tamar Geiger, Karen B. Avraham, Ron Shamir
Software Mentions: 6
Published: about 7 years ago

10.1371/journal.pone.0227258

Accelerated brain aging towards transcriptional inversion in a zebrafish model of the K115fs mutation of human PSEN2
Cited by: 29
Author(s): Nhi Hin, Morgan Newman, Jan Kaslin, Alon M. Douek, Amanda L. Lumsden, Seyyed Hani Moussavi Nik, Yang Dong, Xin Zhou, Noralyn B. Mañucat-Tan, Alastair J. Ludington, David L. Adelson, Stephen Pederson, Michael Lardelli
Software Mentions: 6
Published: over 4 years ago

10.1186/s13068-018-1116-x

Complete genome sequence and the expression pattern of plasmids of the model ethanologen Zymomonas mobilis ZM4 and its xylose-utilizing derivatives 8b and 2032
Cited by: 54
Author(s): Shihui Yang, Jessica M. Vera, Jeff Grass, Giannis Savvakis, Oleg V. Moskvin, Yongqiang Yang, Sean J. McIlwain, Yucai Lyu, Irene Zinonos, Alexander S. Hebert, Joshua J. Coon, Donna M. Bates, Trey K. Sato, Steven D. Brown, Michael E. Himmel, Min Zhang, Robert Landick, Katherine M. Pappas, Yaoping Zhang
Software Mentions: 6
Published: about 6 years ago

10.1074/mcp.O117.068122

Prediction of Protein Complexes in Trypanosoma brucei by Protein Correlation Profiling Mass Spectrometry and Machine Learning
Cited by: 23
Author(s): Thomas W. M. Crozier, Michele Tinti, Mark Larance, Angus I. Lamond, Michael A. J. Ferguson
Software Mentions: 6
Published: over 6 years ago

10.1016/j.celrep.2020.108545

CDK8 Fine-Tunes IL-6 Transcriptional Activities by Limiting STAT3 Resident Time at the Gene Loci
Cited by: 23
Author(s): Jonathan Martínez-Fábregas, Luopin Wang, Elizabeth Pöhler, Adeline Cozzani, Stephan Wilmes, Majid Kazemian, Suman Mitra, Ignacio Moraga
Software Mentions: 6
Published: over 3 years ago

10.1016/j.xcrm.2021.100267

Cabozantinib and dasatinib synergize to induce tumor regression in non-clear cell renal cell carcinoma
Cited by: 2
Author(s): Hui Wen Lue, Daniel S. Derrick, Soumya Rao, Ahna Van Gaest, Larry C. Cheng, Jennifer Podolak, Samantha Lawson, Changhui Xue, Devin Garg, Ralph E. White, Christopher W. Ryan, Justin M. Drake, Anna Ritz, Laura M. Heiser, George V. Thomas
Software Mentions: 6
Published: about 3 years ago

10.1186/s12915-018-0547-y

Species comparison of liver proteomes reveals links to naked mole-rat longevity and human aging
Cited by: 52
Author(s): Ivonne Heinze, Martin Bens, Enrico Calzia, Susanne Holtze, Oleksandr Dakhovnik, Arne Sahm, Joanna Kirkpatrick, Karol Szafranski, Natalie Romanov, Sai Nagender Sama, Kerstin Hölzer, Stephan Singer, Maria A. Ermolaeva, Matthias Platzer, Thomas B. Hildebrandt, Alessandro Ori
Software Mentions: 6
Published: almost 6 years ago

10.1371/journal.pbio.2006092

Refined RIP-seq protocol for epitranscriptome analysis with low input materials
Cited by: 97
Author(s): Yong Zeng, Shiyan Wang, Shanshan Gao, Fraser Soares, Musadeqque Ahmed, Haiyang Guo, Miranda Wang, Junjie Hua, Jiansheng Guan, Michael F. Moran, Ming‐Sound Tsao, Housheng Hansen He
Software Mentions: 6
Published: over 5 years ago

10.1371/journal.pgen.1008037

Rewired cellular signaling coordinates sugar and hypoxic responses for anaerobic xylose fermentation in yeast
Cited by: 24
Author(s): Kevin S. Myers, Nicholas M. Riley, Matthew E. MacGilvray, Trey K. Sato, Mick McGee, Justin Heilberger, Joshua J. Coon, Audrey P. Gasch
Software Mentions: 6
Published: about 5 years ago

10.1038/sdata.2018.185

The Mount Sinai cohort of large-scale genomic, transcriptomic and proteomic data in Alzheimer's disease
Cited by: 284
Author(s): Minghui Wang, Noam D. Beckmann, Panos Roussos, Erming Wang, Xianxiao Zhou, Qian Wang, Chi Ming, Ryan Neff, Wanli Ma, John F. Fullard, Mads E. Hauberg, Jaroslav Bendl, Mette A. Peters, Ben Logsdon, Pei Wang, Milind Mahajan, Lara M. Mangravite, Eric B. Dammer, Duc M. Duong, James J. Lah, Nicholas T. Seyfried, Aĺlan I. Levey, Joseph D. Buxbaum, Michelle E. Ehrlich, Sam Gandy, Pavel Katsel, Vahram Haroutunian, Eric E. Schadt, Bin Zhang
Software Mentions: 6
Published: over 5 years ago

10.1084/jem.20192275

NCKAP1L defects lead to a novel syndrome combining immunodeficiency, lymphoproliferation, and hyperinflammation
Cited by: 44
Author(s): Carla Castro, Michelle Rosenzwajg, Raphaël Carapito, Mohammad Shahrooei, Martina Konantz, Amjad Khan, Zhichao Miao, Miriam Groß, Thibaud Tranchant, Mirjana Radosavljevic, Nicodème Paul, Tristan Stemmelen, Fabien Pitoiset, Aurélie Hirschler, Benoît Nespola, Anne Molitor, Véronique Rolli, Angélique Pichot, Laura Faletti, Bruno Rinaldi, Sylvie Friant, Mark Mednikov, Hatice Karaüzüm, M. Javad Aman, Christine Carapito, Claudia Lengerke, Vahid Ziaee, Wafaa Eyaid, Stephan Ehl, Fayhan Alroqi, Nima Parvaneh, Seiamak Bahram
Software Mentions: 6
Published: almost 4 years ago

10.7554/eLife.37078

Arabidopsis RNA processing factor SERRATE regulates the transcription of intronless genes
Cited by: 31
Author(s): Corinna Speth, Emese Szabó, Cláudia Martinho, Silvio Collani, Sven zur Oven-Krockhaus, Sandra Richter, Irina Droste-Borel, Boris Maček, York‐Dieter Stierhof, Markus Schmid, Chang Liu, Sascha Laubinger
Software Mentions: 6
Published: over 5 years ago

10.1186/gb-2013-14-2-r16

A de novo assembly of the newt transcriptome combined with proteomic validation identifies new protein families expressed during tissue regeneration
Cited by: 104
Author(s): Mario Looso, Jens Preussner, Konstantinos Sousounis, Marc Bruckskotten, Christian Michel, Ettore Lignelli, Richard Reinhardt, Sabrina Höffner, Marcus Krüger, Panagiotis A. Tsonis, Thilo Borchardt, Thomas Braun
Software Mentions: 6
Published: over 11 years ago

10.1074/jbc.RA120.014745

Quantitative phosphoproteomic analysis reveals involvement of PD-1 in multiple T cell functions
Cited by: 14
Author(s): Anna S. Tocheva, Michael Peled, Marianne Strazza, Kieran Adam, Shalom Lerrer, Shruti Nayak, Inbar Azoulay-Alfaguter, Connor Foster, Elliot A. Philips, Benjamin G. Neel, Beatrix Ueberheide, Adam Mor
Software Mentions: 6
Published: over 3 years ago

10.1080/20013078.2020.1785746

Influence of species and processing parameters on recovery and content of brain tissue‐derived extracellular vesicles
Cited by: 62
Author(s): Yiyao Huang, Lesley Cheng, Andrey Turchinovich, Vasiliki Mahairaki, Juan C. Troncoso, Olga Pletniková, Norman J. Haughey, Laura J. Vella, Andrew F. Hill, Lei Zheng, Kenneth W. Witwer
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12983-019-0312-2

Metabolic reprogramming involving glycolysis in the hibernating brown bear skeletal muscle
Cited by: 30
Author(s): Blandine Chazarin, Kenneth B. Storey, Anna Ziemianin, Stéphanie Chanon, Marine Plumel, Isabelle Chery, Christine Durand, Alina L. Evans, Jon M. Arnemo, Andreas Zedrosser, Jon E. Swenson, Guillemette Gauquelin‐Koch, Chantal Simon, Stéphane Blanc, Étienne Lefai, Fabrice Bertile
Software Mentions: 6
Published: about 5 years ago

10.15252/embj.2021108345

Piwi–piRNA complexes induce stepwise changes in nuclear architecture at target loci
Cited by: 4
Author(s): Yuka W. Iwasaki, Sira Sriswasdi, Yasuha Kinugasa, Jun Adachi, Yasunori Horikoshi, Aoi Shibuya, Wataru Iwasaki, Satoshi Tashiro, Takeshi Tomonaga, Haruhiko Siomi
Software Mentions: 6
Published: almost 3 years ago

10.1038/s41598-021-89531-7

Reconstruction of the miR-506-Quaking axis in Idiopathic Pulmonary Fibrosis using integrative multi-source bioinformatics
Cited by: 2
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Chunguang Liang, Kevin Schmidt, Xiaoyan Ke, Annette Just, Angelika Pfanne, Andreas Pich, G. Warnecke, Peter Braubach, Christina Petzold, Danny Jonigk, Jörg H W Distler, Jan Fiedler, Thomas Thum, Meik Kunz
Software Mentions: 6
Published: almost 3 years ago

10.1186/s13059-017-1321-0

The nuclear receptor ERβ engages AGO2 in regulation of gene transcription, RNA splicing and RISC loading
Cited by: 55
Author(s): Roberta Tarallo, Giorgio Giurato, Giuseppina Bruno, Maria Ravo, Francesca Rizzo, Annamaria Salvati, Luca Ricciardi, Giovanna Marchese, Angela Cordella, Teresa Rocco, Valerio Gigantino, Biancamaria Pierri, Giovanni Cimmino, Luciano Milanesi, Concetta Ambrosino, Tuula A. Nyman, Giovanni Nassa, Alessandro Weisz
Software Mentions: 6
Published: over 6 years ago

10.1038/s41598-021-94256-8

Proteomics and metabonomics analyses of Covid-19 complications in patients with pulmonary fibrosis
Cited by: 10
Author(s): Jianrong Yang, Chunxia Chen, Wan Chen, Luying Huang, Zhao Fu, Kun Ye, Liwen Lv, Zhihuang Nong, Xing Zhou, Wensheng Lu, Ming Zhong
Software Mentions: 6
Published: almost 3 years ago

10.1128/mBio.02683-20

The Zinc Finger Antiviral Protein ZAP Restricts Human Cytomegalovirus and Selectively Binds and Destabilizes Viral UL4 / UL5 Transcripts
Cited by: 23
Author(s): Ana Cristina Gonzalez-Perez, Markus Stempel, Emanuel Wyler, Christian Urban, Antonio Piras, Thomas Hennig, Sabina Ganskih, Yuanjie Wei, Albert Heim, Markus Landthaler, Andreas Pichlmair, Lars Dölken, Mathias Munschauer, Florian Erhard, Melanie M. Brinkmann
Software Mentions: 6
Published: almost 3 years ago

10.1083/jcb.201612131

Nuclear phosphorylated Dicer processes double-stranded RNA in response to DNA damage
Cited by: 67
Author(s): Kaspar Burger, Margarita Schlackow, Martin Potts, Svenja Hester, Shabaz Mohammed, Monika Gullerová
Software Mentions: 6
Published: almost 7 years ago

10.1016/j.jbc.2021.100877

The RNA-binding protein Nab2 regulates the proteome of the developing Drosophila brain
Cited by: 4
Author(s): Edwin B. Corgiat, Sara M. List, J. Christopher Rounds, Anita H. Corbett, Kenneth H. Moberg
Software Mentions: 6
Published: almost 3 years ago

10.1128/mSystems.01296-20

Harnessing Machine Learning To Unravel Protein Degradation in Escherichia coli
Cited by: 16
Author(s): Natan Nagar, Noa Ecker, Gil Loewenthal, Oren Avram, Daniella Ben-Meir, Dvora Biran, Eliora Z. Ron, Tal Pupko
Software Mentions: 6
Published: about 3 years ago

10.1038/s41598-021-81740-4

Multi-Q 2 software facilitates isobaric labeling quantitation analysis with improved accuracy and coverage
Cited by: 3
Author(s): Ching-Tai Chen, Jen-Hung Wang, Cheng-Wei Cheng, Wei-Che Hsu, Chu-Ling Ko, Wai-Kok Choong, Ting‐Yi Sung
Software Mentions: 5
Published: over 3 years ago

10.15252/embj.2019103852

Grad‐seq in a Gram‐positive bacterium reveals exonucleolytic <scp>sRNA</scp> activation in competence control
Cited by: 47
Author(s): Jens Hör, Geneviève Garriss, Silvia Di Giorgio, Lisa-Marie Hack, Jens T. Vanselow, Konrad U. Förstner, Andreas Schlösser, Birgitta Henriques‐Normark, Jörg Vogel
Software Mentions: 5
Published: about 4 years ago

10.1186/s13059-019-1857-2

eIF4A2 drives repression of translation at initiation by Ccr4-Not through purine-rich motifs in the 5′UTR
Cited by: 34
Author(s): Ania Wilczynska, Sarah L. Gillen, Tobias Schmidt, Hedda A. Meijer, Rebekah Jukes-Jones, Claudia Langlais, Kari Kopra, Wei-Ting Lu, Jack D. Godfrey, Ben R Hawley, Kelly Hodge, Sara Zanivan, Kelvin Cain, John Le Quesne, Martin Bushell
Software Mentions: 5
Published: over 4 years ago

10.1186/s13059-020-02247-1

Uncovering deeply conserved motif combinations in rapidly evolving noncoding sequences
Cited by: 22
Author(s): Caroline Jane Ross, Aviv Rom, Amit Spinrad, Dikla Gelbard-Solodkin, Neta Degani, Igor Ulitsky
Software Mentions: 5
Published: over 3 years ago

10.1111/febs.15292

Fibroblast‐specific genome‐scale modelling predicts an imbalance in amino acid metabolism in Refsum disease
Cited by: 4
Author(s): Agnieszka B. Wegrzyn, Katharina Herzog, Albert Gerding, Marcel Kwiatkowski, Justina C. Wolters, Amalia M. Dolga, A. E. M. van Lint, Ronald J. A. Wanders, Hans R. Waterham, Barbara M. Bakker
Software Mentions: 5
Published: about 4 years ago

10.3389/fgene.2018.00026

Transcriptomic and Proteomic Profiling Revealed High Proportions of Odorant Binding and Antimicrobial Defense Proteins in Olfactory Tissues of the House Mouse
Cited by: 26
Author(s): Barbora Kuntová, Romana Stopková, Pavel Stopka
Software Mentions: 5
Published: over 6 years ago

10.3389/fcell.2020.608044

Loss of G-Protein Pathway Suppressor 2 Promotes Tumor Growth Through Activation of AKT Signaling
Cited by: 10
Author(s): Stefanie Chan, Emma Smith, Yuan Gao, Julian Kwan, Benjamin Blum, Andrew Tilston-Lünel, Isabella Turcinovic, Xaralabos Varelas, Maria Dafne Cardamone, Stefano Monti, Andrew Emili, Valentina Perissi
Software Mentions: 5
Published: over 3 years ago

10.7554/eLife.39054

New insights into the cellular temporal response to proteostatic stress
Cited by: 40
Author(s): Justin Rendleman, Zhe Cheng, Shuvadeep Maity, Nicolai Kastelic, Mathias Munschauer, Kristina Allgoewer, Guoshou Teo, Yun Bin Matteo Zhang, Amy Lei, Brian J. Parker, Markus Landthaler, Lindsay Freeberg, Scott Kuersten, Hyungwon Choi, Christine Vogel
Software Mentions: 5
Published: over 5 years ago

10.3390/ijms22042046

Dysregulated Provision of Oxidisable Substrates to the Mitochondria in ME/CFS Lymphoblasts
Cited by: 20
Author(s): Daniel Missailidis, Oana Sanislav, Claire Y. Allan, Paige K. Smith, Sarah J. Annesley, Paul R. Fisher
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0152067

MaxReport: An Enhanced Proteomic Result Reporting Tool for MaxQuant
Cited by: 13
Author(s): Tao Zhou, Chuyu Li, Wene Zhao, Xinru Wang, Fuqiang Wang, Jiahao Sha
Software Mentions: 5
Published: about 8 years ago

10.1186/s12864-019-6314-9

Mating precedes selective immune priming which is maintained throughout bumblebee queen diapause
Cited by: 32
Author(s): Thomas J. Colgan, Sive Finlay, Mark J. F. Brown, James C. Carolan
Software Mentions: 5
Published: over 4 years ago

10.7554/eLife.64940

DIPPER, a spatiotemporal proteomics atlas of human intervertebral discs for exploring ageing and degeneration dynamics
Cited by: 32
Author(s): Vivian Tam, Peikai Chen, Anita Yee, Nestor Solis, Théo Klein, Mateusz Kudelko, Rakesh Sharma, Wing‐Lok Chan, Christopher M. Overall, Lisbet Haglund, Pak C. Sham, Kathryn S.E. Cheah, Danny Chan
Software Mentions: 5
Published: over 3 years ago

10.1016/j.ajhg.2021.04.024

Bi-allelic loss-of-function variants in BCAS3 cause a syndromic neurodevelopmental disorder
Cited by: 6
Author(s): Holger Hengel, Shabab B. Hannan, Sarah Dyack, Sara MacKay, Ulrich Schatz, Martin Fleger, Andreas Kurringer, Ghassan Balousha, Zaïd Ghanim, Fowzan S. Alkuraya, Hamad Alzaidan, Hessa S. Alsaif, Tadahiro Mitani, Sevcan Tuğ Bozdoğan, Davut Pehlivan, James R. Lupski, Joseph J Gleeson, Mohammadreza Dehghani, Mohammad Yahya Vahidi Mehrjardi, Elliott H. Sherr, Kendall C. Parks, Emanuela Argilli, Amber Begtrup, Hamid Galehdari, Osama Balousha, Gholamreza Shariati, Neda Mazaheri, Reza Azizi Malamiri, Alistair T. Pagnamenta, Helen Kingston, Siddharth Banka, Adam Jackson, Mathew Osmond, Angelika Rieß, Tobias B. Haack, Thomas Nägele, Stefanie Schuster, Stefan Hauser, Jakob Admard, Nicolas Casadei, Ana Velić, Boris Maček, Stephan Ossowski, Henry Houlden, Reza Maroofian, Lüdger Schöls
Software Mentions: 5
Published: almost 3 years ago

10.7554/eLife.41556

Combined transcriptome and proteome profiling reveals specific molecular brain signatures for sex, maturation and circalunar clock phase
Cited by: 40
Author(s): Sven Schenk, Stephanie Bannister, Fritz J. Sedlazeck, Dorothea Anrather, Bùi Quang Minh, Andrea Bileck, Markus Hartl, Arndt von Haeseler, Christopher Gerner, Florian Raible, Kristin Tessmar-Raible
Software Mentions: 5
Published: about 5 years ago

10.1074/mcp.O115.050229

PRIDE Inspector Toolsuite: Moving Toward a Universal Visualization Tool for Proteomics Data Standard Formats and Quality Assessment of ProteomeXchange Datasets
Cited by: 129
Author(s): Yasset Perez‐Riverol, Qing Wei Xu, Rui Wang, Julian Uszkoreit, Johannes Griss, Aniel Sánchez, Florian Reisinger, Attila Csordás, Tobias Ternent, Noemi del-Toro, José A. Dianes, Martin Eisenacher, Henning Hermjakob, Juan Antonio Vizcaíno
Software Mentions: 5
Published: over 8 years ago

10.1186/s12864-017-3978-x

Succinyl-proteome profiling of Dendrobium officinale, an important traditional Chinese orchid herb, revealed involvement of succinylation in the glycolysis pathway
Cited by: 37
Author(s): Shi Feng, Kaili Jiao, Hong Guo, Min Jiang, Juan Hao, Huizhong Wang, Chenjia Shen
Software Mentions: 5
Published: over 6 years ago

10.15252/msb.20177608

Landscape of nuclear transport receptor cargo specificity
Cited by: 79
Author(s): Marie‐Therese Mackmull, Bernd Klaus, Ivonne Heinze, Manopriya Chokkalingam, Andreas Beyer, Robert B. Russell, Alessandro Ori, Martin Beck
Software Mentions: 5
Published: over 6 years ago

10.1016/j.chom.2018.03.007

Chromatin Accessibility-Based Characterization of the Gene Regulatory Network Underlying Plasmodium falciparum Blood-Stage Development
Cited by: 122
Author(s): Christa Geeke Toenhake, Sabine Anne‐Kristin Fraschka, M. Vijayabaskar, David R. Westhead, Simon J. van Heeringen, Richárd Bártfai
Software Mentions: 5
Published: about 6 years ago

10.3390/proteomes8030015

Precursor Intensity-Based Label-Free Quantification Software Tools for Proteomic and Multi-Omic Analysis within the Galaxy Platform
Cited by: 9
Author(s): Subina Mehta, Caleb Easterly, Ray Sajulga, Robert Millikin, Andrea Argentini, Ignacio Eguinoa, Lennart Martens, Michael R. Shortreed, Lloyd M. Smith, Thomas McGowan, Praveen Kumar, James E. Johnson, Timothy J. Griffin, Pratik Jagtap
Software Mentions: 5
Published: almost 4 years ago

10.3390/cancers12061531

Mass Spectrometric Comparison of HPV-Positive and HPV-Negative Oropharyngeal Cancer
Cited by: 6
Author(s): M. Wurlitzer, Nikolaus Möckelmann, Malte Kriegs, Maren Vens, Maryam Omidi, Konstantin Hoffer, Clara von Bargen, Christina Möller‐Koop, Melanie Witt, Conrad Droste, Agnes Oetting, Hannes Petersen, Chia‐Jung Busch, Adrian Münscher, Hartmut Schlüter, Till S. Clauditz, Thorsten Rieckmann
Software Mentions: 5
Published: almost 4 years ago

10.3390/cancers13112592

Identification of Candidate Protein Biomarkers for CIN2+ Lesions from Self-Sampled, Dried Cervico–Vaginal Fluid Using LC-MS/MS
Cited by: 6
Author(s): Ariadna Lara Gutiérrez, Julia Hedlund Lindberg, Ganna Shevchenko, Inger Gustavsson, Jonas Bergquist, Ulf Gyllensten, Stefan Enroth
Software Mentions: 5
Published: almost 3 years ago

10.1038/s42003-020-01181-z

Transcriptomic and proteomic signatures of stemness and differentiation in the colon crypt
Cited by: 27
Author(s): Amber N. Habowski, Jessica L. Flesher, Jennifer Bates, Chia‐Feng Tsai, Kendall J. Martin, Rui Zhao, Anand K. Ganesan, Robert A. Edwards, Tujin Shi, H. Steven Wiley, Yongsheng Shi, Klemens J. Hertel, Marian L. Waterman
Software Mentions: 5
Published: over 3 years ago

10.1186/s12920-019-0530-7

Novel secretome-to-transcriptome integrated or secreto-transcriptomic approach to reveal liquid biopsy biomarkers for predicting individualized prognosis of breast cancer patients
Cited by: 11
Author(s): John A. Ankney, Ling Xie, John A. Wrobel, Li Wang, Xian Chen
Software Mentions: 5
Published: almost 5 years ago

10.1371/journal.pone.0182270

Differential regulation of germ line apoptosis and germ cell differentiation by CPEB family members in C. elegans
Cited by: 4
Author(s): Kapil Dev Singh, Xue Zheng, Stuart Milstein, Martin Keller, Bernd Roschitzki, Jonas Grossmann, Michael O. Hengartner
Software Mentions: 5
Published: almost 7 years ago

10.3390/cancers13051097

Functional States in Tumor-Initiating Cell Differentiation in Human Colorectal Cancer
Cited by: 10
Author(s): Martina K. Zowada, Stephan M. Tirier, Sebastian M. Dieter, Teresa G Krieger, Ava Oberlack, Robert Lorenz Chua, Mario Huerta, Foo Wei Ten, Karin Laaber, Jeongbin Park, Katharina Jechow, Torsten Müller, Mathias Kalxdorf, Mark Kriegsmann, Katharina Kriegsmann, Friederike Herbst, Jeroen Krijgsveld, Martin Schneider, Roland Eils, Hanno Glimm, Christian Conrad, Claudia R. Ball
Software Mentions: 5
Published: about 3 years ago

10.3389/fnmol.2019.00272

DYRK1A Overexpression Alters Cognition and Neural-Related Proteomic Pathways in the Hippocampus That Are Rescued by Green Tea Extract and/or Environmental Enrichment
Cited by: 18
Author(s): Ilario De Toma, Mireia Ortega, Patrick Aloy, Eduard Sabidó, Mara Dierssen
Software Mentions: 5
Published: over 4 years ago

10.1371/journal.pone.0234752

Bayesian networks established functional differences between breast cancer subtypes
Cited by: 5
Author(s): Lucía Trilla-Fuertes, Angelo Gámez‐Pozo, Jorge M. Arevalillo, Rocío López-Vacas, Elena López-Camacho, Guillermo Prado-Vázquez, Andrea Zapater-Moros, Mariana Díaz-Almirón, María Ferrer-Gómez, Hilario Navarro, Paolo Nanni, Pilar Zamora, Enrique Espinosa, Paloma Maı́n, Juan Ángel Fresno Vara
Software Mentions: 5
Published: almost 4 years ago

10.1111/pbi.12852

The transcriptome, extracellular proteome and active secretome of agroinfiltratedNicotiana benthamianauncover a large, diverse protease repertoire
Cited by: 52
Author(s): Friederike Grosse‐Holz, Steven L. Kelly, Svenja Blaskowski, Farnusch Kaschani, Markus Kaiser, Renier A. L. van der Hoorn
Software Mentions: 5
Published: over 6 years ago

10.3389/fphys.2021.652799

Proteomics and Machine Learning Approaches Reveal a Set of Prognostic Markers for COVID-19 Severity With Drug Repurposing Potential
Cited by: 45
Author(s): Kruthi Suvarna, Deeptarup Biswas, Medha Gayathri J Pai, Arup Acharjee, Renuka Bankar, Viswanthram Palanivel, Akanksha Salkar, Ayushi Verma, Amrita Mukherjee, Manisha Choudhury, Saicharan Ghantasala, Susmita Ghosh, Avinash Singh, Arghya Banerjee, Apoorva Badaya, Surbhi Bihani, Gaurish Loya, Krishi Mantri, Ananya Burli, Jyotirmoy Roy, Alisha Srivastava, Sachee Agrawal, Om Shrivastav, Jayanthi Shastri, Sanjeeva Srivastava
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pbio.3000170

The temporal profile of activity-dependent presynaptic phospho-signalling reveals long-lasting patterns of poststimulus regulation
Cited by: 24
Author(s): Kasper Engholm-Keller, Ashley J. Waardenberg, Johannes Alexander Müller, Jesse R. Wark, Rowena N Fernando, Jonathan W. Arthur, Phillip J. Robinson, Dirk Dietrich, Susanne Schoch, Mark E. Graham
Software Mentions: 5
Published: about 5 years ago

10.1016/j.bbapap.2013.02.032

Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspective
Cited by: 67
Author(s): Yasset Perez‐Riverol, Rui Wang, Henning Hermjakob, Markus Müller, Vladimir Vesada, Juan Antonio Vizcaíno
Software Mentions: 5
Published: over 10 years ago

10.1021/acsomega.1c03681

Interactome Networks of FOSL1 and FOSL2 in Human Th17 Cells
Cited by: 5
Author(s): Ankitha Shetty, Santosh D. Bhosale, Subhash Tripathi, Tanja Buchacher, Rahul Biradar, Omid Rasool, Robert Moulder, Sanjeev Galande, Riitta Lahesmaa
Software Mentions: 5
Published: over 2 years ago

10.1371/journal.pone.0170762

Semi-quantitative proteomics of mammalian cells upon short-term exposure to non-ionizing electromagnetic fields
Cited by: 13
Author(s): Arnold Kuzniar, Charlie Laffeber, Berina Eppink, Karel Bezstarosti, Dick H. W. Dekkers, H. Woelders, A.P.M. Zwamborn, Jeroen Demmers, Joyce H.G. Lebbink, Roland Kanaar
Software Mentions: 5
Published: about 7 years ago

10.1186/s13024-020-00405-4

Integrated analysis of the aging brain transcriptome and proteome in tauopathy
Cited by: 20
Author(s): Carl Grant Mangleburg, Timothy Wu, Hari Krishna Yalamanchili, Caiwei Guo, Yi-Cheng Hsieh, Duc Duong, Eric B. Dammer, Philip L. De Jager, Nicholas T. Seyfried, Zhandong Liu, Zhandong Liu
Software Mentions: 5
Published: over 3 years ago

10.1016/j.isci.2021.102807

Identification of response signatures for tankyrase inhibitor treatment in tumor cell lines
Cited by: 6
Author(s): Line Mygland, Jo Waaler, Martin Frank Strand, Petter Olsen, Aleksandra Aizenshtadt, Kaja Lund, Nina Solberg, Max Lycke, Tor Espen Thorvaldsen, Sandra Espada, Dorna Misaghian, Christian M. Page, Oleg Agafonov, Ståle Nygård, Nai‐Wen Chi, Eva Lin, Jenille Tan, Yihong Yu, Mike Costa, Stefan Krauß, Jo Waaler
Software Mentions: 4
Published: almost 3 years ago

10.1371/journal.pone.0228108

Community-intrinsic properties enhance keratin degradation from bacterial consortia
Cited by: 15
Author(s): Poonam Nasipuri, Jakob Herschend, Asker Brejnrod, Jonas Stenløkke Madsen, Roall Espersen, Birte Svensson, Mette Burmølle, Samuel Jacquiod, Søren J. Sørensen
Software Mentions: 4
Published: over 4 years ago

10.1371/journal.pntd.0006351

Development of a Trypanosoma cruzi strain typing assay using MS2 peptide spectral libraries (Tc-STAMS2)
Cited by: 9
Author(s): Gilberto Santos de Oliveira, Rebeca Kawahara, Lívia Rosa-Fernandes, Simon Ngao Mule, Carla Cristi Avila, Marta Maria Geraldes Teixeira, Martin R. Larsen, Giuseppe Palmisano
Software Mentions: 4
Published: about 6 years ago

10.1074/mcp.RA117.000189

Spatial Tissue Proteomics Quantifies Inter- and Intratumor Heterogeneity in Hepatocellular Carcinoma (HCC)
Cited by: 63
Author(s): Katarzyna Buczak, Alessandro Ori, Joanna Kirkpatrick, Kerstin Hölzer, Daniel Dauch, Stephanie Roessler, Volker Endris, Felix Lasitschka, Luca Parca, Alexander Schmidt, Lars Zender, Peter Schirmacher, Jeroen Krijgsveld, Stephan Singer, Martin Beck
Software Mentions: 4
Published: about 6 years ago

10.3390/ijms21082873

Bioinformatics Methods for Mass Spectrometry-Based Proteomics Data Analysis
Cited by: 115
Author(s): Chen Chen, Jie Hou, John J. Tanner
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.pgen.1008551

Aspergillus fumigatus calcium-responsive transcription factors regulate cell wall architecture promoting stress tolerance, virulence and caspofungin resistance
Cited by: 32
Author(s): Patrícia Alves de Castro, Ana Cristina Colabardini, Adriana Oliveira Manfiolli, Jéssica Chiaratto, Lilian Pereira Silva, Eliciane Cevolani Mattos, Giuseppe Palmisano, Fausto Almeida, Gabriela Félix Persinoti, Laure Nicolas Annick Ries, Laura Mellado, Marina Campos Rocha, Michael Bromley, Roberto Nascimento Silva, Gabriel Scalini de Souza, Flávio Vieira Loures, Iran Malavazi, Neil Andrew Brown, Gustavo H. Goldman
Software Mentions: 4
Published: over 4 years ago

10.1074/mcp.RA118.001141

Proteome Analysis of Human Neutrophil Granulocytes From Patients With Monogenic Disease Using Data-independent Acquisition
Cited by: 45
Author(s): Piotr Grabowski, Sebastian Hesse, Sebastian Hollizeck, Meino Rohlfs, Uta Behrends, Roya Sherkat, Hannah Tamary, Ekrem Ünal, Raz Somech, Türkan Patıroğlu, Stefan Canzar, Jutte van der Werff ten Bosch, Christoph Klein, Juri Rappsilber
Software Mentions: 4
Published: about 5 years ago

10.7554/eLife.56554

Cytotoxic T cells swarm by homotypic chemokine signalling
Cited by: 32
Author(s): Jorge Luis Galeano Niño, Sophie V. Pageon, Szun S. Tay, Feyza Colakoglu, Daryan Kempe, Jack D. Hywood, Jessica K Mazalo, James Cremasco, Matt Govendir, Laura F. Dagley, Ku‐Lung Hsu, Simone Rizzetto, Jerzy Zieba, Gregory Rice, Victoria Prior, Geraldine M. O’Neill, Richard J. Williams, David R. Nisbet, Belinda Kramer, Andrew I. Webb, Fabio Luciani, Mark Read, Maté Biro
Software Mentions: 4
Published: over 3 years ago

10.3390/ijms22158251

DIA-Based Quantitative Proteomics Reveals the Protein Regulatory Networks of Floral Thermogenesis in Nelumbo nucifera
Cited by: 5
Author(s): Yueyang Sun, Yu Zeng, Jing Jin, Hao Chen, Zhiying Liu, Qinru Zi, Zeyang Xiong, Ying Wang, Qian Li, Jing Peng, Yi Ding
Software Mentions: 4
Published: almost 3 years ago

10.3390/ijms22020736

Omics Analysis of Blood-Responsive Regulon in Bordetella pertussis Identifies a Novel Essential T3SS Substrate
Cited by: 2
Author(s): Jakub Držmíšek, Daniel Štipl, Denisa Petráčková, Branislav Večerek, Ana Dienstbier
Software Mentions: 4
Published: over 3 years ago

10.3390/antibiotics10030325

The Phosin PptA Plays a Negative Role in the Regulation of Antibiotic Production in Streptomyces lividans
Cited by: 7
Author(s): Noriyasu Shikura, Emmanuelle Darbon, Catherine Esnault, Ariane Deniset‐Besseau, Delin Xu, Clara Lejeune, Éric Jacquet, Naïma Nhiri, Laila Sago, David Cornu, Sebastiaan Werten, Cécile Martel, Marie‐Joëlle Virolle
Software Mentions: 4
Published: about 3 years ago

10.1016/j.molcel.2021.06.016

Targeted protein degradation reveals a direct role of SPT6 in RNAPII elongation and termination
Cited by: 31
Author(s): Ashwin Narain, Pranjali Bhandare, Bikash Adhikari, Simone Backes, Martin Eilers, Lars Dölken, Andreas Schlösser, Florian Erhard, Apoorva Baluapuri, Elmar Wolf
Software Mentions: 4
Published: almost 3 years ago

10.1016/j.molcel.2019.04.002

Functional Landscape of PCGF Proteins Reveals Both RING1A/B-Dependent-and RING1A/B-Independent-Specific Activities
Cited by: 116
Author(s): Andrea Scelfo, Daniel Fernández-Pérez, Simone Tamburri, Marika Zanotti, Elisa Lavarone, Monica Soldi, Tiziana Bonaldi, Karin Johanna Ferrari, Diego Pasini
Software Mentions: 4
Published: almost 5 years ago

10.7554/eLife.66014

Competitive binding of STATs to receptor phospho-Tyr motifs accounts for altered cytokine responses
Cited by: 18
Author(s): Stephan Wilmes, Polly-Anne Jeffrey, Jonathan Martínez-Fábregas, Maximillian Hafer, Paul K. Fyfe, Elizabeth Pöhler, Silvia Gaggero, Martín López‐García, Grant Lythe, Charles Taylor, Thomas Guerrier, David Launay, Suman Mitra, Jacob Piehler, Carmen Molina-Parı́s, Ignacio Moraga
Software Mentions: 4
Published: about 3 years ago

10.1038/s41598-017-01179-4

Monitoring global protein thiol-oxidation and protein S-mycothiolation in Mycobacterium smegmatis under hypochlorite stress
Cited by: 42
Author(s): Mélanie Hillion, Jörg Bernhardt, Tobias Busche, Martina Rossius, Sandra Maaß, Dörte Becher, Mamta Rawat, Markus Wirtz, Rüdiger Hell, Christian Rückert, Jörn Kalinowski, Haike Antelmann
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-017-04375-4

Comparative genetic, proteomic and phosphoproteomic analysis of C. elegans embryos with a focus on ham-1/STOX and pig-1/MELK in dopaminergic neuron development
Cited by: 11
Author(s): Sarah-Lena Offenburger, Dalila Bensaddek, Alejandro Brenes Murillo, Anton Gartner
Software Mentions: 4
Published: almost 7 years ago

10.1080/15476286.2019.1621625

NET-prism enables RNA polymerase-dedicated transcriptional interrogation at nucleotide resolution
Cited by: 5
Author(s): Constantine Mylonas, Peter Tessarz
Software Mentions: 4
Published: almost 5 years ago

Projects: cran: Andromeda

Papers Mentioning Andromeda 1,724