Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: Andromeda

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/Andromeda

Asynchronous Disk-Based Representation of Massive Data
10 versions
Latest release: about 1 year ago
3 dependent packages
1,891 downloads last month

Papers Mentioning Andromeda 1,724

10.3390/jof5010007
Proteomic Analysis of the Responses of Candida albicans during Infection of Galleria mellonella Larvae
Cited by: 16
Author(s): Gerard Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: over 5 years ago
10.3390/jof6020042
Exposure of Aspergillus fumigatus to Atorvastatin Leads to Altered Membrane Permeability and Induction of an Oxidative Stress Response
Cited by: 6
Author(s): Ahmad Ajdidi, Gerard Sheehan, Kevin Kavanagh
Software Mentions: 1
Published: about 4 years ago
10.3390/jof7090748
ITS2 Sequencing and Targeted Meta-Proteomics of Infant Gut Mycobiome Reveal the Functional Role of Rhodotorula sp. during Atopic Dermatitis Manifestation
Cited by: 9
Author(s): Kevin Mok, Narissara Suratanon, Sittiruk Roytrakul, Sawanya Charoenlappanit, Preecha Patumcharoenpol, Pantipa Chatchatee, Wanwipa Vongsangnak, Massalin Nakphaichit
Software Mentions: 1
Published: over 2 years ago
10.1155/2015/678527
Hypoxia Strongly Affects Mitochondrial Ribosomal Proteins and Translocases, as Shown by Quantitative Proteomics of HeLa Cells
Cited by: 22
Author(s): Paula A. Bousquet, Joe Alexander Sandvik, Magnus Ø. Arntzen, Nina Frederike Jeppesen Edin, Stine Christoffersen, Ute Krengel, Erik O. Pettersen, Bernd Thiede
Software Mentions: 1
Published: over 8 years ago
10.1155/2015/841769
SILAC-Based Quantitative Proteomic Analysis of Diffuse Large B-Cell Lymphoma Patients
Cited by: 12
Author(s): Ulla Rüetschi, Martin Stenson, Sverker Hasselblom, Herman Nilsson‐Ehle, Ulrika Hansson, Henrik Fagman, Per‐Ola Andersson
Software Mentions: 1
Published: about 9 years ago
10.1167/iovs.17-22927
Generation and Proteome Profiling of PBMC-Originated, iPSC-Derived Corneal Endothelial Cells
Cited by: 23
Author(s): Muhammad Ali, Shahid Y. Khan, Shivakumar Vasanth, Mariya R Ahmed, Ruiqiang Chen, Chan Hyun Na, Jason J. Thomson, Caihong Qiu, John D. Gottsch, Saima Riazuddin
Software Mentions: 1
Published: about 6 years ago
10.1038/s41388-019-0971-7
Microparticles from tumors exposed to radiation promote immune evasion in part by PD-L1
Cited by: 29
Author(s): Michael Timaner, Ruslana Kotsofruk, Ziv Raviv, Ksenia Magidey, Dvir Shechter, Tal Kan, A. Nevelsky, Shahar Daniel, Elisabeth G.E. de Vries, Tongwu Zhang, Orit Kaidar–Person, Robert S. Kerbel, Yuval Shaked
Software Mentions: 1
Published: over 4 years ago
10.1093/jisesa/ieab057
Identification of N-linked Glycoproteins in Silkworm Serum Using Con A Lectin Affinity Chromatography and Mass Spectrometry
Cited by: 0
Author(s): Zhaoming Dong, Lin Ye, Yan Zhang, Zhiyong Chen, Benchi Li, Tao Zhang, Ping Zhao
Software Mentions: 1
Published: almost 3 years ago
10.1038/s41389-021-00334-x
MMP8 increases tongue carcinoma cell–cell adhesion and diminishes migration via cleavage of anti-adhesive FXYD5
Cited by: 9
Author(s): Krista Juurikka, Antoine Dufour, Kari P. Pehkonen, Barbara Mainoli, Priscila Campioni Rodrigues, Nestor Solis, Théo Klein, Pia Nyberg, Christopher M. Overall, Tuula Salo, Pirjo Åström
Software Mentions: 1
Published: almost 3 years ago
10.1194/jlr.RA120001126
Perilipin 5 S155 phosphorylation by PKA is required for the control of hepatic lipid metabolism and glycemic control
Cited by: 18
Author(s): Stacey N Keenan, William De Nardo, Jieqiong Lou, Ralf B. Schittenhelm, Magdalene K Montgomery, James G. Granneman, Elizabeth Hinde, Matthew J. Watt
Software Mentions: 1
Published: over 3 years ago
10.1007/s10856-012-4760-x
Quantitative proteomics reveals altered expression of extracellular matrix related proteins of human primary dermal fibroblasts in response to sulfated hyaluronan and collagen applied as artificial extracellular matrix
Cited by: 13
Author(s): Stephan Müller, Anja van der Smissen, Margarete von Feilitzsch, Ulf Anderegg, Stefan Kalkhof, Martin von Bergen
Software Mentions: 1
Published: over 11 years ago
10.7554/eLife.61509
Molecular basis for substrate specificity of the Phactr1/PP1 phosphatase holoenzyme
Cited by: 17
Author(s): Roman O Fedoryshchak, Magdalena Přechová, Abbey M Butler, Rebecca Lee, Nicola O’Reilly, Helen Flynn, Ambrosius P Snijders, Noreen Eder, Sila K Ultanir, S. Mouilleron, Richard Treisman
Software Mentions: 1
Published: over 3 years ago
10.7554/eLife.65712
Sushi domain-containing protein 4 controls synaptic plasticity and motor learning
Cited by: 10
Author(s): Inés González-Calvo, Keerthana Iyer, Mélanie Carquin, Anouar Khayachi, Fernando Giuliani, Séverine M. Sigoillot, J.D. Vincent, Martial Séveno, Maxime Veleanu, Sylvana Tahraoui, Mélanie Albert, Oana Vigy, Célia Bosso-Lefèvre, Yann Nadjar, Andréa Dumoulin, Antoine Triller, Jean-Louis Bessereau, Laure Rondi-Reig, Philippe Isope, Fekrije Selimi
Software Mentions: 1
Published: about 3 years ago
10.7554/eLife.01990
Host-induced bacterial cell wall decomposition mediates pattern-triggered immunity in Arabidopsis
Cited by: 57
Author(s): Xiaokun Liu, Heini M Grabherr, Roland Willmann, Dagmar Kolb, Frédéric Brunner, Ute Bertsche, Daniel Kühner, Mirita Franz‐Wachtel, Bushra Amin, Georg Felix, Marc Ongena, Thorsten Nürnberger, Andrea A. Gust
Software Mentions: 1
Published: almost 10 years ago
10.7554/eLife.46380
Endothelial PKA activity regulates angiogenesis by limiting autophagy through phosphorylation of ATG16L1
Cited by: 26
Author(s): Xuyao Zhao, Pavel I. Nedvetsky, Fabio Stanchi, Anne-Clémence Vion, Oliver Popp, Kerstin Zühlke, Gunnar Dittmar, Enno Klussmann, Holger Gerhardt
Software Mentions: 1
Published: over 4 years ago
10.7554/eLife.44210
Antigen receptor control of methionine metabolism in T cells
Cited by: 123
Author(s): Linda V. Sinclair, Andrew J. M. Howden, Alejandro Brenes, Laura Spinelli, Jens Hukelmann, Andrew N. Macintyre, Xiaojing Liu, Sarah Thomson, Peter M. Taylor, Jeffrey C. Rathmell, Jason W. Locasale, Angus I. Lamond, Doreen A. Cantrell
Software Mentions: 1
Published: about 5 years ago
10.7554/eLife.33465
Exportin Crm1 is repurposed as a docking protein to generate microtubule organizing centers at the nuclear pore
Cited by: 13
Author(s): Xun X. Bao, Christos Spanos, Tomoko Kojidani, E.M. Lynch, Juri Rappsilber, Yasushi Hiraoka, Tokuko Haraguchi, Kenneth E. Sawin
Software Mentions: 1
Published: almost 6 years ago
10.7554/eLife.35012
FRMD8 promotes inflammatory and growth factor signalling by stabilising the iRhom/ADAM17 sheddase complex
Cited by: 47
Author(s): Ulrike Künzel, Adam G. Grieve, Yao Meng, Boris Sieber, Sally A. Cowley, Matthew Freeman
Software Mentions: 1
Published: almost 6 years ago
10.7554/eLife.21007
Molecular basis of outer kinetochore assembly on CENP-T
Cited by: 104
Author(s): Pim J Huis in 't Veld, Sadasivam Jeganathan, Arsen Petrovic, Priyanka Singh, Juliane John, Veronica Krenn, Florian Weissmann, Tanja Bange, Andrea Musacchio
Software Mentions: 1
Published: over 7 years ago
10.7554/eLife.12748
Systematic substrate identification indicates a central role for the metalloprotease ADAM10 in axon targeting and synapse function
Cited by: 125
Author(s): Peer‐Hendrik Kuhn, Alessio Colombo, Benjamin Schusser, Daniela Dreymueller, Sebastian Wetzel, Ute Schepers, Julia Herber, Andreas Ludwig, Elisabeth Kremmer, Dirk Montag, Ulrike Müller, Michaela Schweizer, Paul Säftig, Stefan Bräse, Stefan F. Lichtenthaler
Software Mentions: 1
Published: over 8 years ago
10.7554/eLife.57495
Differential accumulation of storage bodies with aging defines discrete subsets of microglia in the healthy brain
Cited by: 39
Author(s): Jeremy C. Burns, Bunny Cotleur, Dirk Walther, Bekim Bajrami, Stephen Rubino, Ru Wei, Nathalie Franchimont, Susan L. Cotman, Richard M. Ransohoff, Michaël Mingueneau
Software Mentions: 1
Published: almost 4 years ago
10.7554/eLife.32111
Mitochondrial CoQ deficiency is a common driver of mitochondrial oxidants and insulin resistance
Cited by: 84
Author(s): Daniel J. Fazakerley, Rima Chaudhuri, Pengyi Yang, Ghassan J. Maghzal, Kristen C. Thomas, James R. Krycer, Sean J. Humphrey, Benjamin L. Parker, Kelsey H. Fisher‐Wellman, Christopher C. Meoli, Nolan J. Hoffman, Ciana Diskin, James G. Burchfield, Mark J. Cowley, Warren Kaplan, Zora Modrušan, Ganesh Kolumam, Pengyi Yang, Daniel L. Chen, Dorit Samocha-Bonet, Jerry R. Greenfield, Kyle L. Hoehn, Roland Stocker, David E. James
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.00785
MAVS recruits multiple ubiquitin E3 ligases to activate antiviral signaling cascades
Cited by: 270
Author(s): Siqi Liu, Jueqi Chen, Xin Cai, Jiaxi Wu, Xiang Chen, You Wu, Lijun Sun, Zhijian J. Chen
Software Mentions: 1
Published: almost 11 years ago