Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.ppat.1007945

https://doi.org/10.1371/journal.ppat.1007945

Cryptococcus neoformans resists to drastic conditions by switching to viable but non-culturable cell phenotype

Cited by: 28
Author(s): Bernd Hommel, Aude Sturny-Leclère, Stevenn Volant, Nathanaël Veluppillai, Magalie Duchateau, Chen-Hsin Albert Yu, Véronique Hourdel, Hugo Varet, Mariette Matondo, John R. Perfect, Arturo Casadevall, Françoise Dromer, Alexandre Alanio
Published: over 5 years ago

Software Mentions 10

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
cran: Andromeda
Asynchronous Disk-Based Representation of Massive Data
Papers that mentioned: 1,724
cran: imp4p
Imputation for Proteomics
Papers that mentioned: 1
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: STAT
Interactive Document for Working with Basic Statistical Analysis
Papers that mentioned: 508
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: ggplot
ggplot for python
Papers that mentioned: 796
pypi: heatmap
Module to create heatmaps
Papers that mentioned: 285
pypi: kmeans
python wrapper for basic c implementation of kmeans
Papers that mentioned: 62
pypi: multiqc
Create aggregate bioinformatics analysis reports across many samples and tools
Papers that mentioned: 37