Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-021-89531-7

https://doi.org/10.1038/s41598-021-89531-7

Reconstruction of the miR-506-Quaking axis in Idiopathic Pulmonary Fibrosis using integrative multi-source bioinformatics

Cited by: 2
Author(s): Stevan D. Stojanović, Maximilian Fuchs, Chunguang Liang, Kevin Schmidt, Xiaoyan Ke, Annette Just, Angelika Pfanne, Andreas Pich, G. Warnecke, Peter Braubach, Christina Petzold, Danny Jonigk, Jörg H W Distler, Jan Fiedler, Thomas Thum, Meik Kunz
Published: over 3 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: Andromeda
Asynchronous Disk-Based Representation of Massive Data
Papers that mentioned: 1,724
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512