Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.15252/msb.20199247

https://doi.org/10.15252/msb.20199247

<i> <scp>STAT</scp> 3 </i> ‐dependent analysis reveals <i> <scp>PDK</scp> 4 </i> as independent predictor of recurrence in prostate cancer

Cited by: 34
Author(s): Monika Oberhuber, Matteo Pecoraro, Mate Rusz, Georg Oberhuber, Maritta Wieselberg, Peter Haslinger, Elisabeth Gurnhofer, Michaela Schlederer, Tanja Limberger, Sabine Lagger, Jan Pěnčík, Petra Kodajova, Sandra Högler, Georg Stockmaier, Sandra Grund-Gröschke, Fritz Aberger, Marco Bolis, Jean-Philippe Theurillat, Robert Wiebringhaus, Theresa R. Weiss, Andrea Haitel, Marc Brehme, Wolfgang Wadsak, Johannes Griss, Thomas Mohr, Alexandra Hofer, Anton Jäger, Jürgen Pollheimer, Gerda Egger, Gunda Koellensperger, Matthias Mann, Brigitte Hantusch, Lukas Kenner
Published: over 4 years ago

Software Mentions 21

bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: EGSEA
Ensemble of Gene Set Enrichment Analyses
Papers that mentioned: 22
bioconductor: EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
Papers that mentioned: 123
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: TCGAbiolinks
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
Papers that mentioned: 276
cran: Andromeda
Asynchronous Disk-Based Representation of Massive Data
Papers that mentioned: 1,724
cran: corrplot
Visualization of a Correlation Matrix
Papers that mentioned: 1,077
cran: DescTools
Tools for Descriptive Statistics
Papers that mentioned: 152
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
cran: Hmisc
Harrell Miscellaneous
Papers that mentioned: 1,000
cran: nortest
Tests for Normality
Papers that mentioned: 95
cran: PMCMRplus
Calculate Pairwise Multiple Comparisons of Mean Rank Sums Extended
Papers that mentioned: 41
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: survminer
Drawing Survival Curves using 'ggplot2'
Papers that mentioned: 1,473
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
cran: WGCNA
Weighted Correlation Network Analysis
Papers that mentioned: 3,479
pypi: package
package is a package to package your package
Papers that mentioned: 1,300
pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105