Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.15252/msb.20188503

https://doi.org/10.15252/msb.20188503

A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

Cited by: 479
Author(s): Dongxue Wang, Basak Eraslan, Thomas Wieland, Björn M. Hallström, Thomas A. Hopf, Daniel Paul Zolg, Jana Zecha, Anna Asplund, Lihua Li, Chen Meng, Martin Frejno, Tobias Schmidt, Karsten Schnatbaum, Mathias Wilhelm, Fredrik Pontén, Mathias Uhlén, Julien Gagneur, Hannes Hahne, Bernhard Küster
Published: almost 6 years ago

Software Mentions 8

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics data
Papers that mentioned: 2,223
bioconductor: customProDB
Generate customized protein database from NGS data, with a focus on RNA-Seq data, for proteomics search
Papers that mentioned: 7
bioconductor: GOSemSim
GO-terms Semantic Similarity Measures
Papers that mentioned: 118
bioconductor: made4
Multivariate analysis of microarray data using ADE4
Papers that mentioned: 86
cran: Andromeda
Asynchronous Disk-Based Representation of Massive Data
Papers that mentioned: 1,724
pypi: analysis
Source code analysis of Python programs
Papers that mentioned: 2,036
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989