Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.12688/f1000research.16198.2

https://doi.org/10.12688/f1000research.16198.2

Cited by: 25
Author(s): Brendan T. Innes, Gary D. Bader
Published: about 5 years ago

Software Mentions 16

bioconductor: DESeq2

Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583

bioconductor: edgeR

Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568

bioconductor: limma

Linear Models for Microarray Data
Papers that mentioned: 7,776

bioconductor: MAST

Model-based Analysis of Single Cell Transcriptomics
Papers that mentioned: 668

bioconductor: scde

Single Cell Differential Expression
Papers that mentioned: 13

bioconductor: SingleCellExperiment

S4 Classes for Single Cell Data
Papers that mentioned: 36

cran: ggrepel

Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164

cran: RColorBrewer

ColorBrewer Palettes
Papers that mentioned: 490

cran: scales

Scale Functions for Visualization
Papers that mentioned: 104

cran: Seurat

Tools for Single Cell Genomics
Papers that mentioned: 1,512

cran: shiny

Web Application Framework for R
Papers that mentioned: 127

cran: viridis

Colorblind-Friendly Color Maps for R
Papers that mentioned: 92

pypi: MAST

MAterials Simulation Toolkit
Papers that mentioned: 668

pypi: scales

Stats for Python processes
Papers that mentioned: 104

pypi: shiny

A web development framework for Python.
Papers that mentioned: 127

pypi: viridis

Tree data structures and algorithms
Papers that mentioned: 92