Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1084/jem.20200920

https://doi.org/10.1084/jem.20200920

Single-cell analyses identify circulating anti-tumor CD8 T cells and markers for their enrichment

Cited by: 57
Author(s): Kristen E. Pauken, Osmaan Shahid, Kaitlyn A. Lagattuta, Kelly Mahuron, Jacob M. Luber, Margaret M. Lowe, Lüping Huang, Conor P. Delaney, Jaclyn M. Long, Megan E. Fung, Kathleen Newcomer, Katy K. Tsai, Melissa Chow, Samantha Guinn, Juhi R. Kuchroo, Kelly P. Burke, Jason M. Schenkel, Michael D. Rosenblum, Adil Daud, Arlene H. Sharpe, Meromit Singer
Published: over 3 years ago

Software Mentions 17

bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: DescTools
Tools for Descriptive Statistics
Papers that mentioned: 152
cran: doParallel
Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90
cran: doSNOW
Foreach Parallel Adaptor for the 'snow' Package
Papers that mentioned: 19
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
cran: gtools
Various R Programming Tools
Papers that mentioned: 60
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: tibble
Simple Data Frames
Papers that mentioned: 47
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
pypi: liblinear
Python bindings for liblinear
Papers that mentioned: 48
pypi: matplotlib
Python plotting package
Papers that mentioned: 1,045
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92