Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12866-021-02282-3

https://doi.org/10.1186/s12866-021-02282-3

Cited by: 14
Author(s): Quang P. Nguyen, Margaret R. Karagas, Juliette C. Madan, Erika Dade, Thomas J. Palys, Hilary G. Morrison, Wimal Pathmasiri, Susan McRitche, Susan Sumner, H. Robert Frost, Anne G. Hoen
Published: over 2 years ago

Software Mentions 19

bioconductor: phyloseq

Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702

cran: compositions

Compositional Data Analysis
Papers that mentioned: 39

cran: cowplot

Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298

cran: doParallel

Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: MiSPU

Microbiome Based Sum of Powered Score (MiSPU) Tests
Papers that mentioned: 6

cran: pheatmap

Pretty Heatmaps
Papers that mentioned: 2,572

cran: phytools

Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586

cran: picante

Integrating Phylogenies and Ecology
Papers that mentioned: 414

cran: plyr

Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468

cran: rstanarm

Bayesian Applied Regression Modeling via Stan
Papers that mentioned: 70

cran: tidymodels

Easily Install and Load the 'Tidymodels' Packages
Papers that mentioned: 7

cran: tidyverse

Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023

cran: vegan

Community Ecology Package
Papers that mentioned: 6,903

cran: viridis

Colorblind-Friendly Color Maps for R
Papers that mentioned: 92

pypi: cutadapt

Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562

pypi: phytools

Useful tools for physicists.
Papers that mentioned: 586

pypi: plyr

UNKNOWN
Papers that mentioned: 468

pypi: viridis

Tree data structures and algorithms
Papers that mentioned: 92