Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12866-021-02282-3

https://doi.org/10.1186/s12866-021-02282-3

Associations between the gut microbiome and metabolome in early life

Cited by: 14
Author(s): Quang P. Nguyen, Margaret R. Karagas, Juliette C. Madan, Erika Dade, Thomas J. Palys, Hilary G. Morrison, Wimal Pathmasiri, Susan McRitche, Susan Sumner, H. Robert Frost, Anne G. Hoen
Published: about 3 years ago

Software Mentions 19

bioconductor: phyloseq
Handling and analysis of high-throughput microbiome census data
Papers that mentioned: 1,702
cran: compositions
Compositional Data Analysis
Papers that mentioned: 39
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
cran: doParallel
Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: MiSPU
Microbiome Based Sum of Powered Score (MiSPU) Tests
Papers that mentioned: 6
cran: pheatmap
Pretty Heatmaps
Papers that mentioned: 2,572
cran: phytools
Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586
cran: picante
Integrating Phylogenies and Ecology
Papers that mentioned: 414
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
cran: rstanarm
Bayesian Applied Regression Modeling via Stan
Papers that mentioned: 70
cran: tidymodels
Easily Install and Load the 'Tidymodels' Packages
Papers that mentioned: 7
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: phytools
Useful tools for physicists.
Papers that mentioned: 586
pypi: plyr
UNKNOWN
Papers that mentioned: 468
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92