Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1002/bit.27209

https://doi.org/10.1002/bit.27209

Comparative genome‐scale analysis of <i>Pichia pastoris</i> variants informs selection of an optimal base strain

Cited by: 31
Author(s): Joseph Brady, Charles A. Whittaker, Melody C. Tan, D. Lee Kristensen, Duanduan Ma, Neil C. Dalvie, Kerry R. Love, J. Christopher Love
Published: almost 5 years ago

Software Mentions 7

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: fgsea
Fast Gene Set Enrichment Analysis
Papers that mentioned: 150
cran: PCGSE
Principal Component Gene Set Enrichment
Papers that mentioned: 3
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
pypi: plasma
PPPL deep learning package.
Papers that mentioned: 1
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92