Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-020-80165-9

https://doi.org/10.1038/s41598-020-80165-9

Multi-level remodelling of chromatin underlying activation of human T cells

Cited by: 23
Author(s): Naiara G. Bediaga, Hannah D. Coughlan, Timothy M. Johanson, Alexandra L. Garnham, Gaetano Naselli, Jan Schröder, Liam G. Fearnley, Esther Bandala‐Sanchez, Rhys S. Allan, Gordon K. Smyth, Leonard C. Harrison
Published: almost 4 years ago

Software Mentions 14

bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: diffHic
Differential Analyis of Hi-C Data
Papers that mentioned: 12
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: Glimma
Interactive HTML graphics
Papers that mentioned: 17
bioconductor: InteractionSet
Base Classes for Storing Genomic Interaction Data
Papers that mentioned: 6
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing data
Papers that mentioned: 331
bioconductor: Sushi
Papers that mentioned: 18
cran: viridis
Colorblind-Friendly Color Maps for R
Papers that mentioned: 92
pypi: ggplot
ggplot for python
Papers that mentioned: 796
pypi: inferno
Inferno: a python map/reduce platform powered by disco.
Papers that mentioned: 3
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: NucleoATAC
python package for calling nucleosomes with ATAC-Seq
Papers that mentioned: 17
pypi: viridis
Tree data structures and algorithms
Papers that mentioned: 92