Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: InteractionSet
https://packages.ecosyste.ms/registries/bioconductor.org/packages/InteractionSet
Base Classes for Storing Genomic Interaction Data
1 version
Latest release: 8 months ago
18 dependent packages
87,638 downloads total
Papers Mentioning InteractionSet 6
10.12688/f1000research.13577.2
Using regulatory genomics data to interpret the function of disease variants and prioritise genes from expression studiesCited by: 2
Author(s): Enrico Ferrero
Software Mentions: 21
Published: over 6 years ago
10.1038/s41598-020-80165-9
Multi-level remodelling of chromatin underlying activation of human T cellsCited by: 23
Author(s): Naiara G. Bediaga, Hannah D. Coughlan, Timothy M. Johanson, Alexandra L. Garnham, Gaetano Naselli, Jan Schröder, Liam G. Fearnley, Esther Bandala‐Sanchez, Rhys S. Allan, Gordon K. Smyth, Leonard C. Harrison
Software Mentions: 14
Published: over 3 years ago
10.12688/f1000research.8759.2
Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experimentsCited by: 16
Author(s): Aaron T. L. Lun, Malcolm Perry, Elizabeth Ing-Simmons
Software Mentions: 10
Published: almost 8 years ago
10.1073/pnas.1819788116
Genome-wide colocalization of RNA–DNA interactions and fusion RNA pairsCited by: 48
Author(s): Zhangming Yan, Norman Huang, Weixin Wu, Weizhong Chen, Yiqun Jiang, Jingyao Chen, Xuerui Huang, Xingzhao Wen, Jie Xu, Qiushi Jin, Kang Zhang, Zhe Chen, Shu Chien, Sheng Zhong
Software Mentions: 6
Published: over 5 years ago
10.1371/journal.pgen.1007431
Genome-wide analysis reveals no evidence of trans chromosomal regulation of mammalian immune developmentCited by: 18
Author(s): Timothy M. Johanson, Hannah D. Coughlan, Aaron T. L. Lun, Naiara G. Bediaga, Gaetano Naselli, Alexandra L. Garnham, Leonard C. Harrison, Rhys S. Allan
Software Mentions: 5
Published: almost 6 years ago
10.1093/bioinformatics/btz808
HiCBricks: building blocks for efficient handling of large Hi-C datasetsCited by: 5
Author(s): Koustav Pal, Ilario Tagliaferri, Carmen Maria Livi, Francesco Ferrari
Software Mentions: 3
Published: over 4 years ago