Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: InteractionSet

https://packages.ecosyste.ms/registries/bioconductor.org/packages/InteractionSet

Base Classes for Storing Genomic Interaction Data
1 version
Latest release: about 1 year ago
18 dependent packages
87,638 downloads total

Papers Mentioning InteractionSet 6

10.12688/f1000research.13577.2
Using regulatory genomics data to interpret the function of disease variants and prioritise genes from expression studies
Cited by: 2
Author(s): Enrico Ferrero
Software Mentions: 21
Published: over 6 years ago
10.1038/s41598-020-80165-9
Multi-level remodelling of chromatin underlying activation of human T cells
Cited by: 23
Author(s): Naiara G. Bediaga, Hannah D. Coughlan, Timothy M. Johanson, Alexandra L. Garnham, Gaetano Naselli, Jan Schröder, Liam G. Fearnley, Esther Bandala‐Sanchez, Rhys S. Allan, Gordon K. Smyth, Leonard C. Harrison
Software Mentions: 14
Published: almost 4 years ago
10.12688/f1000research.8759.2
Infrastructure for genomic interactions: Bioconductor classes for Hi-C, ChIA-PET and related experiments
Cited by: 16
Author(s): Aaron T. L. Lun, Malcolm Perry, Elizabeth Ing-Simmons
Software Mentions: 10
Published: over 8 years ago
10.1073/pnas.1819788116
Genome-wide colocalization of RNA–DNA interactions and fusion RNA pairs
Cited by: 48
Author(s): Zhangming Yan, Norman Huang, Weixin Wu, Weizhong Chen, Yiqun Jiang, Jingyao Chen, Xuerui Huang, Xingzhao Wen, Jie Xu, Qiushi Jin, Kang Zhang, Zhe Chen, Shu Chien, Sheng Zhong
Software Mentions: 6
Published: almost 6 years ago
10.1371/journal.pgen.1007431
Genome-wide analysis reveals no evidence of trans chromosomal regulation of mammalian immune development
Cited by: 18
Author(s): Timothy M. Johanson, Hannah D. Coughlan, Aaron T. L. Lun, Naiara G. Bediaga, Gaetano Naselli, Alexandra L. Garnham, Leonard C. Harrison, Rhys S. Allan
Software Mentions: 5
Published: over 6 years ago
10.1093/bioinformatics/btz808
HiCBricks: building blocks for efficient handling of large Hi-C datasets
Cited by: 5
Author(s): Koustav Pal, Ilario Tagliaferri, Carmen Maria Livi, Francesco Ferrari
Software Mentions: 3
Published: about 5 years ago