Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.12688/f1000research.13577.2
https://doi.org/10.12688/f1000research.13577.2
Cited by: 2
Author(s): Enrico Ferrero
Published: about 6 years ago
Software Mentions 21
bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSetPapers that mentioned: 1,962
bioconductor: clusterProfiler
A universal enrichment tool for interpreting omics dataPapers that mentioned: 2,223
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: GenomicInteractions
Utilities for handling genomic interaction dataPapers that mentioned: 10
bioconductor: GenomicRanges
Representation and manipulation of genomic intervalsPapers that mentioned: 323
bioconductor: Gviz
Plotting data and annotation information along genomic coordinatesPapers that mentioned: 134
bioconductor: InteractionSet
Base Classes for Storing Genomic Interaction DataPapers that mentioned: 6
bioconductor: ldblock
data structures for linkage disequilibrium measures in populationsPapers that mentioned: 1
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browserPapers that mentioned: 107
bioconductor: Sushi
Papers that mentioned: 18cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of GraphicsPapers that mentioned: 11,441
pypi: anno
Anno is a thin user interface on Markdown files for easy and local text editing, organization, and program composability.Papers that mentioned: 2