Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s41598-019-54004-5

https://doi.org/10.1038/s41598-019-54004-5

An Escherichia coli ST131 pangenome atlas reveals population structure and evolution across 4,071 isolates

Cited by: 61
Author(s): Arun Gonzales Decano, Tim Downing
Published: about 5 years ago

Software Mentions 30

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: forcats
Tools for Working with Categorical Variables (Factors)
Papers that mentioned: 33
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggridges
Ridgeline Plots in 'ggplot2'
Papers that mentioned: 53
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: maps
Draw Geographical Maps
Papers that mentioned: 137
cran: phytools
Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586
cran: plotly
Create Interactive Web Graphics via 'plotly.js'
Papers that mentioned: 163
cran: plyr
Tools for Splitting, Applying and Combining Data
Papers that mentioned: 468
cran: poweRlaw
Analysis of Heavy Tailed Distributions
Papers that mentioned: 33
cran: questionr
Functions to Make Surveys Processing Easier
Papers that mentioned: 13
cran: readr
Read Rectangular Text Data
Papers that mentioned: 80
cran: rentrez
'Entrez' in R
Papers that mentioned: 36
cran: stringr
Simple, Consistent Wrappers for Common String Operations
Papers that mentioned: 172
cran: tibble
Simple Data Frames
Papers that mentioned: 47
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
cran: VGAM
Vector Generalized Linear and Additive Models
Papers that mentioned: 89
cran: XML
Tools for Parsing and Generating XML Within R and S-Plus
Papers that mentioned: 60
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: forcats
Tools for working with pandas categoricals
Papers that mentioned: 33
pypi: grid
Volumetric data module
Papers that mentioned: 137
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: maps
Maps: flavors of Python dictionaries
Papers that mentioned: 137
pypi: phytools
Useful tools for physicists.
Papers that mentioned: 586
pypi: plotly
An open-source, interactive data visualization library for Python
Papers that mentioned: 163
pypi: plyr
UNKNOWN
Papers that mentioned: 468
pypi: purr
Data reduction logging tool, Useful for remembering reductions
Papers that mentioned: 15