Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: purr
https://packages.ecosyste.ms/registries/pypi.org/packages/purr
Data reduction logging tool, Useful for remembering reductions
7 versions
Latest release: almost 3 years ago
104 downloads last month
Papers Mentioning purr 15
10.1038/s41598-019-54004-5
An Escherichia coli ST131 pangenome atlas reveals population structure and evolution across 4,071 isolatesCited by: 61
Author(s): Arun Gonzales Decano, Tim Downing
Software Mentions: 30
Published: almost 5 years ago
10.1080/19490976.2021.1940792
Antibiotic-driven intestinal dysbiosis in pediatric short bowel syndrome is associated with persistently altered microbiome functions and gut-derived bloodstream infectionsCited by: 13
Author(s): Robert Thänert, Anna Thänert, Jocelyn Ou, Adam Bajinting, Carey Ann D. Burnham, Holly J. Engelstad, Maria E. Tecos, I. Malick Ndao, Carla Hall-Moore, Colleen Rouggly-Nickless, Mike A. Carl, Deborah C. Rubin, Nicholas O. Davidson, Phillip I. Tarr, Barbara B. Warner, Gautam Dantas, Brad W. Warner
Software Mentions: 22
Published: almost 4 years ago
10.7717/peerj.4278
Forecasting biodiversity in breeding birds using best practicesCited by: 37
Author(s): David J. Harris, Shawn D. Taylor, Ethan P. White
Software Mentions: 21
Published: almost 7 years ago
10.7717/peerj.5794
beadplexr: reproducible and automated analysis of multiplex bead assaysCited by: 4
Author(s): Ulrik Stervbo, Timm H. Westhoff, Nina Babel
Software Mentions: 20
Published: about 6 years ago
10.1038/s42003-021-02025-0
SARS-CoV-2 shifting transmission dynamics and hidden reservoirs potentially limit efficacy of public health interventions in ItalyCited by: 23
Author(s): Marta Giovanetti, Eleonora Cella, Francesca Benedetti, Brittany Rife Magalis, Vagner Fonseca, Silvia Fabris, Giovanni Campisi, Alessandra Ciccozzi, Silvia Angeletti, Alessândra Borsetti, Vittoradolfo Tambone, Caterina Sagnelli, Stefano Pascarella, Alberto Riva, Giancarlo Ceccarelli, Alessandro Marcello, Taj Azarian, Eduan Wilkinson, Túlio de Oliveira, Luiz Carlos Júnior Alcântara, Roberto Cauda, Arnaldo Caruso, Natalie E. Dean, Cameron J. Browne, José Lourenço, Marco Salemi, Davide Zella, Massimo Ciccozzi
Software Mentions: 17
Published: over 3 years ago
10.1186/s13059-019-1819-8
SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelinesCited by: 12
Author(s): Abraham Gihawi, Ghanasyam Rallapalli, Rachel Hurst, Colin S. Cooper, Richard M. Leggett, Daniel Brewer
Software Mentions: 17
Published: about 5 years ago
10.3389/fimmu.2020.620716
Multiscale Modeling of Germinal Center Recapitulates the Temporal Transition From Memory B Cells to Plasma Cells Differentiation as Regulated by Antigen Affinity-Based Tfh Cell HelpCited by: 14
Author(s): Elena Merino Tejero, Danial Lashgari, Rodrigo García-Valiente, Xuefeng Gao, Fabien Crauste, Philippe A. Robert, Michael Meyer‐Hermann, María Rodríguez Martínez, S. Marieke van Ham, Jeroen E. J. Guikema, Huub Hoefsloot, Antoine H. C. van Kampen
Software Mentions: 13
Published: almost 4 years ago
10.1093/gigascience/giz088
PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mappingCited by: 5
Author(s): Luis Francisco Hernández Sánchez, Bram Burger, Carlos Horro, Antonio Fabregat, Stefan Johansson, Pål Rasmus Njølstad, Harald Barsnes, Henning Hermjakob, Marc Vaudel
Software Mentions: 12
Published: over 5 years ago
10.3389/fnut.2021.676026
Food Sources Contributing to Intake of Choline and Individual Choline Forms in a Norwegian Cohort of Patients With Stable Angina PectorisCited by: 8
Author(s): Anthea Van Parys, Therese Karlsson, Kathrine J. Vinknes, Trond E. Olsen, Jannike Øyen, Jutta Dierkes, Ottar Nygård, Vegard Lysne
Software Mentions: 11
Published: over 3 years ago
10.1007/s00431-021-04147-3
Sleep behavior of infants with infantile hemangioma treated with propranolol—a cohort studyCited by: 6
Author(s): Martin Theiler, Nicole Knöpfel, Susanne Heydt, Agnes Schwieger‐Briel, Isabelle Luchsinger, Alexandra Smith, Kristin Kernland‐Lang, Regula Waelchli, Kathrin Neuhaus, Malcolm Kohler, Ralph Gnannt, Sarah F. Schoch, Lisa Weibel, Salomé Kurth
Software Mentions: 11
Published: over 3 years ago
10.3389/fpsyg.2020.579545
When Large-Scale Assessments Meet Data Science: The Big-Fish-Little-Pond Effect in Fourth- and Eighth-Grade Mathematics Across NationsCited by: 4
Author(s): Ze Wang
Software Mentions: 8
Published: about 4 years ago
10.34133/2020/3074916
RhizoVision Crown: An Integrated Hardware and Software Platform for Root Crown PhenotypingCited by: 65
Author(s): Anand Seethepalli, Haichao Guo, Xiuwei Liu, Marcus Griffiths, Hussien Almtarfi, Zenglu Li, Shuyu Liu, Alina Zare, Felix B. Fritschi, Elison B. Blancaflor, Xuefeng Ma, Larry M. York
Software Mentions: 8
Published: almost 5 years ago
10.1155/2019/8047627
Short-Term Activation of Peroxisome Proliferator-Activated Receptors<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="M1"><mml:mrow><mml:mi>α</mml:mi></mml:mrow></mml:math>and<mml:math xmlns:mml="http://www.w3.org/1998/Math/MathML" id="M2"><mml:mrow><mml:mi>γ</mml:mi></mml:mrow></mml:math>Induces Tissue-Specific Effects on Lipid Metabolism and Fatty Acid Composition in Male Wistar RatsCited by: 18
Author(s): Elin Strand, Vegard Lysne, Mari Lausund Grinna, Pavol Bohov, Asbjørn Svardal, Ottar Nygård, Rolf K. Berge, Bodil Bjørndal
Software Mentions: 7
Published: over 5 years ago
10.3390/nu12051288
Cluster Analysis of Physical Activity Patterns, and Relationship with Sedentary Behavior and Healthy Lifestyles in Prepubertal Children: Genobox CohortCited by: 20
Author(s): Rosaura Leis, José Manuel Jurado-Castro, Francisco Jesús Llorente-Cantarero, Augusto Anguita‐Ruiz, Azahara Iris-Rupérez, Juan José Bedoya-Carpente, Rocío Vázquez-Cobela, Concepción M. Aguilera, Gloria Bueno, Mercedes Gil-Campos
Software Mentions: 7
Published: over 4 years ago