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An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1038/s42003-021-02025-0

https://doi.org/10.1038/s42003-021-02025-0

SARS-CoV-2 shifting transmission dynamics and hidden reservoirs potentially limit efficacy of public health interventions in Italy

Cited by: 23
Author(s): Marta Giovanetti, Eleonora Cella, Francesca Benedetti, Brittany Rife Magalis, Vagner Fonseca, Silvia Fabris, Giovanni Campisi, Alessandra Ciccozzi, Silvia Angeletti, Alessândra Borsetti, Vittoradolfo Tambone, Caterina Sagnelli, Stefano Pascarella, Alberto Riva, Giancarlo Ceccarelli, Alessandro Marcello, Taj Azarian, Eduan Wilkinson, Túlio de Oliveira, Luiz Carlos Júnior Alcântara, Roberto Cauda, Arnaldo Caruso, Natalie E. Dean, Cameron J. Browne, José Lourenço, Marco Salemi, Davide Zella, Massimo Ciccozzi
Published: over 4 years ago

Software Mentions 17

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
Very Likely Science (100)
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
Very Likely Science (100)
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
Very Likely Science (100)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: lubridate
Make Dealing with Dates a Little Easier
Papers that mentioned: 84
Very Likely Science (100)
cran: nosoi
A Forward Agent-Based Transmission Chain Simulator
Papers that mentioned: 3
Very Likely Science (95)
cran: phytools
Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586
Very Likely Science (100)
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
Very Likely Science (95)
cran: rlist
A Toolbox for Non-Tabular Data Manipulation
Papers that mentioned: 5
Very Likely Science (75)
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
Very Likely Science (100)
cran: tidytree
A Tidy Tool for Phylogenetic Tree Data Manipulation
Papers that mentioned: 10
Very Likely Science (85)
cran: treedater
Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
Papers that mentioned: 16
Very Likely Science (85)
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
Very Likely Science (65)
pypi: phytools
Useful tools for physicists.
Papers that mentioned: 586
Very Likely Science (80)
pypi: purr
Data reduction logging tool, Useful for remembering reductions
Papers that mentioned: 15
Very Likely Science (100)
pypi: rlist
A simple test for Python
Papers that mentioned: 5
Very Likely Science (65)
pypi: tidytree
manager directories
Papers that mentioned: 10
Very Likely Science (65)