Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s42003-021-02025-0

https://doi.org/10.1038/s42003-021-02025-0

SARS-CoV-2 shifting transmission dynamics and hidden reservoirs potentially limit efficacy of public health interventions in Italy

Cited by: 23
Author(s): Marta Giovanetti, Eleonora Cella, Francesca Benedetti, Brittany Rife Magalis, Vagner Fonseca, Silvia Fabris, Giovanni Campisi, Alessandra Ciccozzi, Silvia Angeletti, Alessândra Borsetti, Vittoradolfo Tambone, Caterina Sagnelli, Stefano Pascarella, Alberto Riva, Giancarlo Ceccarelli, Alessandro Marcello, Taj Azarian, Eduan Wilkinson, Túlio de Oliveira, Luiz Carlos Júnior Alcântara, Roberto Cauda, Arnaldo Caruso, Natalie E. Dean, Cameron J. Browne, José Lourenço, Marco Salemi, Davide Zella, Massimo Ciccozzi
Published: over 3 years ago

Software Mentions 17

bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: lubridate
Make Dealing with Dates a Little Easier
Papers that mentioned: 84
cran: nosoi
A Forward Agent-Based Transmission Chain Simulator
Papers that mentioned: 3
cran: phytools
Phylogenetic Tools for Comparative Biology (and Other Things)
Papers that mentioned: 586
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: rlist
A Toolbox for Non-Tabular Data Manipulation
Papers that mentioned: 5
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
cran: tidytree
A Tidy Tool for Phylogenetic Tree Data Manipulation
Papers that mentioned: 10
cran: treedater
Fast Molecular Clock Dating of Phylogenetic Trees with Rate Variation
Papers that mentioned: 16
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: phytools
Useful tools for physicists.
Papers that mentioned: 586
pypi: purr
Data reduction logging tool, Useful for remembering reductions
Papers that mentioned: 15
pypi: rlist
A simple test for Python
Papers that mentioned: 5
pypi: tidytree
manager directories
Papers that mentioned: 10