Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1093/gigascience/giz088

https://doi.org/10.1093/gigascience/giz088

PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mapping

Cited by: 5
Author(s): Luis Francisco Hernández Sánchez, Bram Burger, Carlos Horro, Antonio Fabregat, Stefan Johansson, Pål Rasmus Njølstad, Harald Barsnes, Henning Hermjakob, Marc Vaudel
Published: over 5 years ago

Software Mentions 12

cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
cran: graphlayouts
Additional Layout Algorithms for Network Visualizations
Papers that mentioned: 2
cran: gtable
Arrange 'Grobs' in Tables
Papers that mentioned: 15
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: scico
Colour Palettes Based on the Scientific Colour-Maps
Papers that mentioned: 5
pypi: grid
Volumetric data module
Papers that mentioned: 137
pypi: gtable
A fast table-like container for data analytics
Papers that mentioned: 15
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555
pypi: purr
Data reduction logging tool, Useful for remembering reductions
Papers that mentioned: 15
pypi: scico
Scientific Computational Imaging COde: A Python package for scientific imaging problems
Papers that mentioned: 5