Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: gtable
https://packages.ecosyste.ms/registries/pypi.org/packages/gtable
A fast table-like container for data analytics
15 versions
Latest release: about 6 years ago
48 downloads last month
Papers Mentioning gtable 15
10.1186/1471-2156-15-81
Copy number polymorphisms near SLC2A9 are associated with serum uric acid concentrationsCited by: 16
Author(s): Robert B. Scharpf, Lynn Mireles, Qiong Yang, Anna Köttgen, Ingo Ruczinski, Katalin Suszták, Eitan Halper-Stromberg, Adrienne Tin, Stephen Cristiano, Aravinda Chakravarti, Eric Boerwinkle, Caroline S. Fox, Josef Coresh, W. H. Linda Kao
Software Mentions: 56
Published: almost 11 years ago
10.1371/journal.pone.0251194
A computational reproducibility study of PLOS ONE articles featuring longitudinal data analysesCited by: 15
Author(s): Heidi Seibold, Severin Czerny, Siona Decke, Roman Dieterle, Thomas Eder, Steffen Fohr, Nico Hahn, Rabea Hartmann, Christoph Heindl, Philipp Kopper, Dario Lepke, Verena Loidl, Maximilian Mandl, Sarah Musiol, Jessica Peter, Alexander Piehler, Elio Rojas, Stefanie Schmid, Hannah Schmidt, Melissa Schmoll, Lennart Schneider, Xiao-Yin To, Viêt Anh Tran, Antje Völker, Moritz Wagner, Joshua Wagner, Maria Waize, Hannah Wecker, Rui Yang, Simone Zellner, Malte Nalenz
Software Mentions: 46
Published: over 3 years ago
10.7717/peerj.2836
Rhea: a transparent and modular R pipeline for microbial profiling based on 16S rRNA gene ampliconsCited by: 273
Author(s): Ilias Lagkouvardos, Sandra E. Fischer, Neeraj Kumar, Thomas Clavel
Software Mentions: 20
Published: almost 8 years ago
10.3390/ani10071151
Tenebrio molitor Larvae Meal Affects the Cecal Microbiota of Growing PigsCited by: 8
Author(s): Sandra De Meyer, Denise K. Geßner, Garima Maheshwari, Julia Röhrig, Theresa Friedhoff, Erika Most, Holger Zorn, Robert Ringseis, Klaus Eder
Software Mentions: 14
Published: over 4 years ago
10.1186/s12915-016-0258-1
The native microbiome of the nematode Caenorhabditis elegans: gateway to a new host-microbiome modelCited by: 283
Author(s): Philipp Dirksen, Sarah Arnaud Marsh, Ines Braker, Nele Heitland, Sophia Wagner, Rania Nakad, Sebastian Mäder, Carola Petersen, Vienna Kowallik, Philip Rosenstiel, Marie‐Anne Félix, Hinrich Schulenburg
Software Mentions: 12
Published: over 8 years ago
10.1093/gigascience/giz088
PathwayMatcher: proteoform-centric network construction enables fine-granularity multiomics pathway mappingCited by: 5
Author(s): Luis Francisco Hernández Sánchez, Bram Burger, Carlos Horro, Antonio Fabregat, Stefan Johansson, Pål Rasmus Njølstad, Harald Barsnes, Henning Hermjakob, Marc Vaudel
Software Mentions: 12
Published: over 5 years ago
10.1111/1462-2920.14621
Microbial iron metabolism as revealed by gene expression profiles in contrasted Southern Ocean regimesCited by: 22
Author(s): Pavla Debeljak, Ève Toulza, Sara Beier, Stéphane Blain, Ingrid Obernosterer
Software Mentions: 12
Published: over 5 years ago
10.1371/journal.pbio.3000595
A role for triglyceride lipase brummer in the regulation of sex differences in Drosophila fat storage and breakdownCited by: 69
Author(s): Lianna W Wat, Charlotte Chao, Rachael Bartlett, Justin Buchanan, Jason W Millington, Hui Ju Chih, Zahid Sadek Chowdhury, Puja Biswas, Vivian Huang, Leah J Shin, Lin Chuan Wang, Marie-Pierre Gauthier, Maria Cecilia Barone, Kristi L. Montooth, Michael A. Welte, Elizabeth J. Rideout
Software Mentions: 11
Published: almost 5 years ago
10.1038/s41598-020-66107-5
Spatio-temporal trends in richness and persistence of bacterial communities in decline-phase water vole populationsCited by: 5
Author(s): Petra Villette, Eve Afonso, Geoffroy Couval, Aurélien Levret, Maxime Galan, A.-C. Goydadin, Jean-François Cosson, Patrick Giraudoux
Software Mentions: 11
Published: over 4 years ago
10.1186/s12859-015-0613-1
tcR: an R package for T cell receptor repertoire advanced data analysisCited by: 199
Author(s): Vadim Nazarov, Mikhail V. Pogorelyy, Ekaterina A. Komech, Ivan V. Zvyagin, Dmitriy A. Bolotin, Mikhail Shugay, Dmitriy M. Chudakov, Yuri B. Lebedev, Ilgar Z. Mamedov
Software Mentions: 10
Published: over 9 years ago
10.1016/j.isci.2021.102768
Spatially resolved sampling for untargeted metabolomics: A new tool for salivomicsCited by: 4
Author(s): Alessio Ciurli, Maximiliam Liebl, Rico Derks, Jacques Neefjes, Martin Giera
Software Mentions: 10
Published: over 3 years ago
10.7717/peerj.2436
RBioplot: an easy-to-use R pipeline for automated statistical analysis and data visualization in molecular biology and biochemistryCited by: 65
Author(s): Jing Zhang, Kenneth B. Storey
Software Mentions: 8
Published: about 8 years ago
10.1186/s12859-015-0608-y
affy2sv: an R package to pre-process Affymetrix CytoScan HD and 750K arrays for SNP, CNV, inversion and mosaicism callingCited by: 3
Author(s): Carles Hernandez‐Ferrer, Inés Quintela, Katharina Danielski, Ángel Carracedo, Luis A. Pérez‐Jurado, Juan R. González
Software Mentions: 7
Published: over 9 years ago
10.1186/s13059-021-02336-9
Complete vertebrate mitogenomes reveal widespread repeats and gene duplicationsCited by: 56
Author(s): Giulio Formenti, Arang Rhie, Jennifer Balacco, Bettina Haase, Jacquelyn Mountcastle, Olivier Fédrigo, Shan-Estelle Brown, Marco Rosario Capodiferro, Farooq Omar Maan Al-Ajli, Roberto Ambrosini, Peter Houde, Sergey Koren, Karen Oliver, Michelle Smith, Jason Skelton, Emma Betteridge, Jale Dolucan, Craig Corton, Iliana Bista, James Torrance, Alan S. Tracey, Jonathan Wood, Marcela Uliano-Silva, Kerstin Howe, Shane McCarthy, Sylke Winkler, Woori Kwak, Jonas Korlach, Arkarachai Fungtammasan, Daniel Fordham, Vânia Costa, Simon Mayes, Matteo Chiara, David S. Horner, Eugene W. Myers, Richard Durbin, Alessandro Achilli, Edward L. Braun, Adam M. Phillippy, Erich D. Jarvis
Software Mentions: 5
Published: over 3 years ago
10.1371/journal.pone.0201657
“In a tree by the brook, there’s a songbird who sings”: Woodlands in an agricultural matrix maintain functionality of a wintering bird communityCited by: 5
Author(s): Biang La Nam Syiem, Varun R. Goswami, Divya Vasudev
Software Mentions: 4
Published: over 6 years ago