Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s13059-019-1819-8

https://doi.org/10.1186/s13059-019-1819-8

SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines

Cited by: 12
Author(s): Abraham Gihawi, Ghanasyam Rallapalli, Rachel Hurst, Colin S. Cooper, Richard M. Leggett, Daniel Brewer
Published: about 5 years ago

Software Mentions 17

cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
cran: ggbeeswarm
Categorical Scatter (Violin Point) Plots
Papers that mentioned: 31
cran: ggExtra
Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements
Papers that mentioned: 32
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
cran: IMP
Interactive Model Performance Evaluation
Papers that mentioned: 172
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: readr
Read Rectangular Text Data
Papers that mentioned: 80
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: ggplot
ggplot for python
Papers that mentioned: 796
pypi: kraken
OCR/HTR engine for all the languages
Papers that mentioned: 24
pypi: picard
The next generation MusicBrainz tagger
Papers that mentioned: 243
pypi: purr
Data reduction logging tool, Useful for remembering reductions
Papers that mentioned: 15
pypi: snakemake
Workflow management system to create reproducible and scalable data analyses
Papers that mentioned: 45