An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13059-019-1819-8

https://doi.org/10.1186/s13059-019-1819-8

SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines

Cited by: 12
Author(s): Abraham Gihawi, Ghanasyam Rallapalli, Rachel Hurst, Colin S. Cooper, Richard M. Leggett, Daniel Brewer
Published: almost 6 years ago

Software Mentions 17

cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
Very Likely Science (100)
cran: ggbeeswarm
Categorical Scatter (Violin Point) Plots
Papers that mentioned: 31
Very Likely Science (100)
cran: ggExtra
Add Marginal Histograms to 'ggplot2', and More 'ggplot2' Enhancements
Papers that mentioned: 32
Very Likely Science (75)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
Very Likely Science (75)
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
Very Likely Science (100)
cran: IMP
Interactive Model Performance Evaluation
Papers that mentioned: 172
Very Likely Science (75)
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
Very Likely Science (83)
cran: readr
Read Rectangular Text Data
Papers that mentioned: 80
Very Likely Science (100)
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
Very Likely Science (95)
cran: tidyr
Tidy Messy Data
Papers that mentioned: 321
Very Likely Science (100)
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
Very Likely Science (100)
pypi: ggplot
ggplot for python
Papers that mentioned: 796
Very Likely Science (100)
pypi: kraken
OCR/HTR engine for all the languages
Papers that mentioned: 24
Very Likely Science (80)
pypi: picard
The next generation MusicBrainz tagger
Papers that mentioned: 243
Very Likely Science (65)
pypi: purr
Data reduction logging tool, Useful for remembering reductions
Papers that mentioned: 15
Very Likely Science (100)
pypi: snakemake
Workflow management system to create reproducible and scalable data analyses
Papers that mentioned: 45
Very Likely Science (100)