cran: ggbeeswarm | Projects | Ecosyste.ms: Papers

10.1186/s13073-021-00910-1

Landscape and selection of vaccine epitopes in SARS-CoV-2
Cited by: 21
Author(s): Christof C. Smith, Kelly Olsen, Kaylee M. Gentry, Maria J. Sambade, Wolfgang Beck, Jason Garness, Sarah Entwistle, Caryn Willis, Steven Vensko, Allison Woods, Misha Fini, Brandon Carpenter, Eric D. Routh, Julia Kodysh, Timothy J. O’Donnell, Carsten Haber, Kirsten Heiß, Volker Stadler, Erik Garrison, Adam Sandor, Jenny P.-Y. Ting, Jared Weiss, Krzysztof Krajewski, Oliver C. Grant, Robert J. Woods, Mark T. Heise, Benjamin G. Vincent, Alex Rubinsteyn
Software Mentions: 27
Published: over 3 years ago

10.1038/s41421-020-00226-1

Patient-derived SARS-CoV-2 mutations impact viral replication dynamics and infectivity in vitro and with clinical implications in vivo
Cited by: 68
Author(s): Hang‐Ping Yao, Xiangyun Lu, Qiong Chen, Kaijin Xu, Yu Chen, Ming-Hui Cheng, Keda Chen, Linfang Cheng, Tian-Hao Weng, Danrong Shi, Fumin Liu, Zhigang Wu, Mingjie Xie, Haibo Wu, Changzhong Jin, Min Zheng, Nanping Wu, Chao Jiang, Lanjuan Li
Software Mentions: 21
Published: almost 4 years ago

10.1186/s13059-019-1819-8

SEPATH: benchmarking the search for pathogens in human tissue whole genome sequence data leads to template pipelines
Cited by: 12
Author(s): Abraham Gihawi, Ghanasyam Rallapalli, Rachel Hurst, Colin S. Cooper, Richard M. Leggett, Daniel Brewer
Software Mentions: 17
Published: almost 5 years ago

10.1371/journal.pgen.1009110

Unique genetic signatures of local adaptation over space and time for diapause, an ecologically relevant complex trait, in Drosophila melanogaster
Cited by: 45
Author(s): Priscilla A. Erickson, Cory A. Weller, Daniel Song, Alyssa Bangerter, Paul S. Schmidt, Alan O. Bergland
Software Mentions: 15
Published: almost 4 years ago

10.1371/journal.pone.0248202

Host-specific gene expression as a tool for introduction success in Naupactus parthenogenetic weevils
Cited by: 1
Author(s): Ava Mackay-Smith, Mary Kate Dornon, R.E. Lucier, Annalisa Okimoto, Flavia Mendonca de Sousa, Marcela Silvina Rodriguero, Viviana A. Confalonieri, Analía Alicia Lanteri, Andrea S. Sequeira
Software Mentions: 14
Published: about 3 years ago

10.3389/fonc.2020.01767

Ovarian Blood Sampling Identifies Junction Plakoglobin as a Novel Biomarker of Early Ovarian Cancer
Cited by: 6
Author(s): Florian Weiland, Noor A. Lokman, Manuela Klingler‐Hoffmann, Thomas W. Jobling, Andrew N. Stephens, Karin Sundfeldt, Peter Hoffmann, Martin K. Oehler
Software Mentions: 13
Published: almost 4 years ago

10.7554/eLife.55529

Smchd1 is a maternal effect gene required for genomic imprinting
Cited by: 22
Author(s): Iromi Wanigasuriya, Quentin Gouil, Sarah Kinkel, Andrés Tapia del Fierro, Tamara Beck, Ellise A Roper, Kelsey Breslin, Jessica M Stringer, Karla J. Hutt, Heather Lee, Andrew Keniry, Matthew E. Ritchie, Marnie E. Blewitt
Software Mentions: 12
Published: almost 4 years ago

10.3758/s13428-020-01385-5

Improving the robustness of infant lexical processing speed measures
Cited by: 7
Author(s): Julia Egger, Caroline F. Rowland, Christina Bergmann
Software Mentions: 11
Published: over 4 years ago

10.1371/journal.pone.0191601

Highly multiplexed single-cell quantitative PCR
Cited by: 12
Author(s): Michael VanInsberghe, Hans Zahn, Alexander D. White, Oleh I. Petriv, Carl L. Hansen
Software Mentions: 10
Published: over 6 years ago

10.1371/journal.pbio.3000202

PlotsOfData—A web app for visualizing data together with their summaries
Cited by: 394
Author(s): Marten Postma, Joachim Goedhart
Software Mentions: 9
Published: over 5 years ago

10.1038/s41598-020-59292-w

Metaphylogenetic analysis of global sewage reveals that bacterial strains associated with human disease show less degree of geographic clustering
Cited by: 5
Author(s): Johanne Ahrenfeldt, Madina Waisi, Isabella Charlotte Loft, Philip Thomas Lanken Conradsen Clausen, Rosa Lundbye Allesøe, Judit Szarvas, René S. Hendriksen, Frank Møller Aarestrup, Ole Lund
Software Mentions: 9
Published: over 4 years ago

10.1038/s41598-019-41940-5

The ciliary Frizzled-like receptor Tmem67 regulates canonical Wnt/β-catenin signalling in the developing cerebellum via Hoxb5
Cited by: 15
Author(s): Zakia Abdelhamed, Dina Abdelmottaleb, Mohammed E. El‐Asrag, Subaashini Natarajan, Gabrielle Wheway, Chris F. Inglehearn, Carmel Toomes, Colin A. Johnson
Software Mentions: 7
Published: over 5 years ago

10.1038/s41419-019-1453-0

Organoids as a new model for improving regenerative medicine and cancer personalized therapy in renal diseases
Cited by: 101
Author(s): Ludovica Grassi, Romina Alfonsi, Federica Francescangeli, Michele Signore, Maria Laura De Angelis, Antonio Addario, Manuela Costantini, Elisabetta Flex, Andrea Ciolfi, Simone Pizzi, Alessandro Bruselles, Matteo Pallocca, Giuseppe Simone, Mustapha Haoui, Mario Falchi, Michèle Milella, Steno Sentinelli, P. Di Matteo, Emilia Stellacci, Michele Gallucci, Giovanni Muto, Marco Tartaglia, Ruggero De Maria, Désirée Bonci
Software Mentions: 6
Published: over 5 years ago

10.1186/s12864-019-5974-9

Comparison of gene expression profile of the spinal cord of sprouting-capable neonatal and sprouting-incapable adult mice
Cited by: 9
Author(s): Hiroshi Tsujioka, Toshio Yamashita
Software Mentions: 5
Published: about 5 years ago

10.1080/15592294.2019.1710913

A regulatory role for CHD2 in myelopoiesis
Cited by: 5
Author(s): Farzaneh Shahin Varnoosfaderani, Anna M. Palau, Wenbo Dong, Jenna Persson, Mickaël Durand-Dubief, J. Peter Svensson, Andreas Lennartsson
Software Mentions: 5
Published: over 4 years ago

10.3389/fimmu.2017.01566

An Analysis of Natural T Cell Responses to Predicted Tumor Neoepitopes
Cited by: 75
Author(s): Anne-Mette Bjerregaard, Morten Nielsen, Vanessa Isabell Jurtz, Carolina Barra, Sine Reker Hadrup, Zoltán Szállási, Aron C. Eklund
Software Mentions: 5
Published: almost 7 years ago

10.3389/fvets.2021.647838

Risk of Introduction of Classical Swine Fever Into the State of Mato Grosso, Brazil
Cited by: 0
Author(s): Daniella N. Schettino, Fedor I. Korennoy, Andrés Pérez
Software Mentions: 5
Published: about 3 years ago

10.1186/s12931-021-01755-3

Dysregulation of COVID-19 related gene expression in the COPD lung
Cited by: 22
Author(s): Alastair Watson, Lisa Öberg, B. Angermann, Cosma Spalluto, Michael Hühn, Hannah Burke, Doriana Cellura, Anna Freeman, Daniel Muthas, Damla Etal, Graham Belfield, Fredrik Karlsson, Karl Nordström, Kris Ostridge, Karl Staples, André Freitas
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pgen.1009146

Crumbs and the apical spectrin cytoskeleton regulate R8 cell fate in the Drosophila eye
Cited by: 4
Author(s): Jonathan M. Pojer, Abdul Jabbar Saiful Hilmi, Shu Kondo, Ken Harvey
Software Mentions: 4
Published: over 3 years ago

10.1186/s12864-020-07240-3

Deep sampling and pooled amplicon sequencing reveals hidden genic variation in heterogeneous rye accessions
Cited by: 11
Author(s): Anna Hawliczek, Leszek Bolibok, Katarzyna Tofil, Ewa Borzęcka, Joanna Jankowicz-Cieślak, Piotr Gawroński, Adam Kral, Bradley J. Till, Hanna Bolibok-Brągoszewska
Software Mentions: 4
Published: almost 4 years ago

10.3389/fonc.2021.667658

Immunophenotyping Reveals Longitudinal Changes in Circulating Immune Cells During Radium-223 Therapy in Patients With Metastatic Castration-Resistant Prostate Cancer
Cited by: 6
Author(s): Jeroen H A Creemers, Maarten J. van der Doelen, Sandra van Wilpe, Rick Hermsen, Tjitske Duiveman-de Boer, Diederik M. Somford, Marcel J.R. Janssen, J.P. Michiel Sedelaar, Niven Mehra, Johannes Textor, Harm Westdorp
Software Mentions: 4
Published: over 3 years ago

10.3390/nu12040999

Effects of Shift Work on the Eating Behavior of Police Officers on Patrol
Cited by: 38
Author(s): Anastasi Kosmadopoulos, Laura Kervezee, Philippe Boudreau, Fernando Gonzales-Aste, Nina Vujović, Frank A.J.L. Scheer, Diane B. Boivin
Software Mentions: 4
Published: over 4 years ago

10.3390/plants10020376

No Effect of Selective Maturation on Fruit Traits for a Bird-Dispersed Species, Sambucus racemosa
Cited by: 4
Author(s): Kohei Koyama, Mayu Tashiro
Software Mentions: 3
Published: over 3 years ago

10.3389/fvets.2021.605910

Risk for African Swine Fever Introduction Into Kazakhstan
Cited by: 6
Author(s): Daniella N. Schettino, Sarsenbay Abdrakhmanov, Kanatzhan K. Beisembayev, Fedor I. Korennoy, Akhmetzhan A. Sultanov, Yersyn Y. Mukhanbetkaliyev, Ablaikhan Kadyrov, Andrés Pérez
Software Mentions: 3
Published: over 3 years ago

10.1186/s12936-019-2637-x

Immunoglobulin G subclass and antibody avidity responses in Malian children immunized with Plasmodium falciparum apical membrane antigen 1 vaccine candidate FMP2.1/AS02A
Cited by: 8
Author(s): Andrea A. Berry, Eric R. Gottlieb, Bourèma Kouriba, Issa Diarra, Mahamadou A. Théra, Sandeep Dutta, Drissa Coulibaly, Amed Ouattara, Amadou Niangaly, Abdoulaye K. Koné, Karim Traore, Youssouf Tolo, Vladimir Mishcherkin, Lorraine Soisson, Carter L. Diggs, William C. Blackwelder, Matthew B. Laurens, Marcelo B. Sztein, Ogobara K. Doumbo, Christopher V. Plowe, Kirsten E. Lyke
Software Mentions: 3
Published: over 5 years ago

10.26508/lsa.201800257

The PI3K and MAPK/p38 pathways control stress granule assembly in a hierarchical manner
Cited by: 43
Author(s): Alexander Martin Heberle, Patricia Razquin Navas, Miriam Langelaar-Makkinje, Katharina Kasack, Ahmed Sadik, Erik Faessler, Udo Hahn, Philip Marx‐Stoelting, Christiane A. Opitz, Christine Sers, Ines Heiland, Sascha Schäuble, Kathrin Thedieck
Software Mentions: 3
Published: over 5 years ago

10.1371/journal.pone.0230106

In RRP, serologic response to HPV is frequently absent and slow to develop
Cited by: 8
Author(s): Farrel J. Buchinsky, Nicole Ruszkay, William L. Valentino, Craig S. Derkay, John E. McClay, Robert W. Bastian, Charles M. Myer, Kevin W. Lollar, Dalya Güriş
Software Mentions: 3
Published: over 4 years ago

10.1186/s13045-020-01024-8

Targeting B7-H3 via chimeric antigen receptor T cells and bispecific killer cell engagers augments antitumor response of cytotoxic lymphocytes
Cited by: 45
Author(s): Jie Liu, Shuo Yang, Bihui Cao, Guangyu Zhou, Fengjuan Zhang, Yuan Wang, Rixin Wang, Lipeng Zhu, Meng Yang, Cong Hu, Hui Liang, Xu Lin, Kangshun Zhu, Guokai Chen, Kathy Qian Luo, Lijun Di, Qi Zhao
Software Mentions: 2
Published: over 3 years ago

10.1371/journal.pgen.1006993

Fibroblast growth factor signaling is required for early somatic gonad development in zebrafish
Cited by: 53
Author(s): Dena M. Leerberg, Kōkichi Sano, Bruce W. Draper
Software Mentions: 2
Published: about 7 years ago

10.3389/fmicb.2020.01415

Intracellular Environment and agr System Affect Colony Size Heterogeneity of Staphylococcus aureus
Cited by: 17
Author(s): Nicola Häffner, Julian Bär, Vanina Dengler Haunreiter, Srikanth Mairpady Shambat, Kati Seidl, Heidi A. Crosby, Alexander R. Horswill, Annelies S. Zinkernagel
Software Mentions: 2
Published: about 4 years ago

10.3389/fncel.2020.00160

Small-Medium Extracellular Vesicles and Their miRNA Cargo in Retinal Health and Degeneration: Mediators of Homeostasis, and Vehicles for Targeted Gene Therapy
Cited by: 34
Author(s): Yvette Wooff, Adrian V. Cioanca, Joshua Chu-Tan, Riemke Aggio-Bruce, Ulrike Schümann, Riccardo Natoli
Software Mentions: 2
Published: about 4 years ago

Ecosyste.ms: Papers

Projects: cran: ggbeeswarm

Papers Mentioning ggbeeswarm 31