An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1186/s13073-021-00910-1

https://doi.org/10.1186/s13073-021-00910-1

Landscape and selection of vaccine epitopes in SARS-CoV-2

Cited by: 21
Author(s): Christof C. Smith, Kelly Olsen, Kaylee M. Gentry, Maria J. Sambade, Wolfgang Beck, Jason Garness, Sarah Entwistle, Caryn Willis, Steven Vensko, Allison Woods, Misha Fini, Brandon Carpenter, Eric D. Routh, Julia Kodysh, Timothy J. O’Donnell, Carsten Haber, Kirsten Heiß, Volker Stadler, Erik Garrison, Adam Sandor, Jenny P.-Y. Ting, Jared Weiss, Krzysztof Krajewski, Oliver C. Grant, Robert J. Woods, Mark T. Heise, Benjamin G. Vincent, Alex Rubinsteyn
Published: about 4 years ago

Software Mentions 27

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: GenomicRanges
Representation and manipulation of genomic intervals
Papers that mentioned: 323
Very Likely Science (90)
bioconductor: msa
Multiple Sequence Alignment
Papers that mentioned: 50
Very Likely Science (90)
cran: caret
Classification and Regression Training
Papers that mentioned: 630
Very Likely Science (100)
cran: cowplot
Streamlined Plot Theme and Plot Annotations for 'ggplot2'
Papers that mentioned: 298
Very Likely Science (83)
cran: doMC
Foreach Parallel Adaptor for 'parallel'
Papers that mentioned: 27
Very Likely Science (75)
cran: dplyr
A Grammar of Data Manipulation
Papers that mentioned: 1,213
Very Likely Science (100)
cran: forcats
Tools for Working with Categorical Variables (Factors)
Papers that mentioned: 33
Very Likely Science (100)
cran: ggallin
Grab Bag of 'ggplot2' Functions
Papers that mentioned: 1
Very Likely Science (79)
cran: ggbeeswarm
Categorical Scatter (Violin Point) Plots
Papers that mentioned: 31
Very Likely Science (100)
cran: ggnewscale
Multiple Fill and Colour Scales in 'ggplot2'
Papers that mentioned: 12
Very Likely Science (100)
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
Very Likely Science (100)
cran: ggpubr
'ggplot2' Based Publication Ready Plots
Papers that mentioned: 856
Very Likely Science (75)
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
Very Likely Science (100)
cran: gplots
Various R Programming Tools for Plotting Data
Papers that mentioned: 2,122
Very Likely Science (85)
cran: gridExtra
Miscellaneous Functions for "Grid" Graphics
Papers that mentioned: 298
Very Likely Science (85)
cran: huxtable
Easily Create and Style Tables for LaTeX, HTML and Other Formats
Papers that mentioned: 1
Very Likely Science (77)
cran: magrittr
A Forward-Pipe Operator for R
Papers that mentioned: 107
Very Likely Science (100)
cran: officer
Manipulation of Microsoft Word and PowerPoint Documents
Papers that mentioned: 3
Likely Science (50)
cran: pROC
Display and Analyze ROC Curves
Papers that mentioned: 1,740
Very Likely Science (95)
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
Very Likely Science (83)
cran: readxl
Read Excel Files
Papers that mentioned: 139
Very Likely Science (100)
pypi: Augur
Papers that mentioned: 37
Very Likely Science (65)
pypi: caret
A Python Interface to Asterisk
Papers that mentioned: 630
Very Likely Science (65)
pypi: forcats
Tools for working with pandas categoricals
Papers that mentioned: 33
Very Likely Science (65)
pypi: msa
Maven settings administrator
Papers that mentioned: 50
Very Likely Science (65)
pypi: pandas
Powerful data structures for data analysis, time series, and statistics
Papers that mentioned: 640
Very Likely Science (100)