cran: doMC | Projects | Ecosyste.ms: Papers

10.7717/peerj-cs.175

Software engineering principles to improve quality and performance of R software
Cited by: 0
Author(s): Seth Russell, Tellen D. Bennett, Debashis Ghosh
Software Mentions: 29
Published: over 5 years ago

10.1186/s13073-021-00910-1

Landscape and selection of vaccine epitopes in SARS-CoV-2
Cited by: 21
Author(s): Christof C. Smith, Kelly Olsen, Kaylee M. Gentry, Maria J. Sambade, Wolfgang Beck, Jason Garness, Sarah Entwistle, Caryn Willis, Steven Vensko, Allison Woods, Misha Fini, Brandon Carpenter, Eric D. Routh, Julia Kodysh, Timothy J. O’Donnell, Carsten Haber, Kirsten Heiß, Volker Stadler, Erik Garrison, Adam Sandor, Jenny P.-Y. Ting, Jared Weiss, Krzysztof Krajewski, Oliver C. Grant, Robert J. Woods, Mark T. Heise, Benjamin G. Vincent, Alex Rubinsteyn
Software Mentions: 27
Published: over 3 years ago

10.3389/fcell.2020.577125

Development of a Metastasis-Related Immune Prognostic Model of Metastatic Colorectal Cancer and Its Usefulness to Immunotherapy
Cited by: 11
Author(s): Zhiwen Luo, Xiao Chen, Yefan Zhang, Zhen Huang, Hong Zhao, Jianjun Zhao, Zhiyu Li, Jianguo Zhou, Jianmei Liu, Jianqiang Cai, Xinyu Bi
Software Mentions: 26
Published: over 3 years ago

10.1371/journal.pgen.1009110

Unique genetic signatures of local adaptation over space and time for diapause, an ecologically relevant complex trait, in Drosophila melanogaster
Cited by: 45
Author(s): Priscilla A. Erickson, Cory A. Weller, Daniel Song, Alyssa Bangerter, Paul S. Schmidt, Alan O. Bergland
Software Mentions: 15
Published: almost 4 years ago

10.3390/metabo9100222

Chemical Diversity and Classification of Secondary Metabolites in Nine Bryophyte Species
Cited by: 29
Author(s): Kristian Peters, Hendrik Treutler, Stefanie Döll, Alida Kindt, Thomas Hankemeier, Steffen Neumann
Software Mentions: 15
Published: almost 5 years ago

10.1371/journal.pcbi.1005158

Machine Learning for Characterization of Insect Vector Feeding
Cited by: 25
Author(s): Denis S. Willett, Justin George, Nora S. Willett, Lukasz L. Stelinski, Stephen L. Lapointe
Software Mentions: 14
Published: almost 8 years ago

10.1186/s12920-019-0578-4

Deconvolution of transcriptomes and miRNomes by independent component analysis provides insights into biological processes and clinical outcomes of melanoma patients
Cited by: 21
Author(s): Petr V. Nazarov, Anke Wienecke-Baldacchino, Andreï Zinovyev, Urszula Czerwińska, Arnaud Muller, Dorothée Nashan, Gunnar Dittmar, Francisco Azuaje, Stephanie Kreis
Software Mentions: 14
Published: almost 5 years ago

10.4269/ajtmh.20-0757

A Computational Modeling Study of COVID-19 in Bangladesh
Cited by: 7
Author(s): Irtesam Mahmud Khan, Ubydul Haque, Samiha Kaisar, Md. Saidur Rahman
Software Mentions: 12
Published: over 3 years ago

10.1186/s13073-016-0384-y

XGR software for enhanced interpretation of genomic summary data, illustrated by application to immunological traits
Cited by: 131
Author(s): Hai Fang, Bogdan Knezevic, Katie L Burnham, Julian C. Knight
Software Mentions: 12
Published: almost 8 years ago

10.1371/journal.pcbi.1003929

dcGOR: An R Package for Analysing Ontologies and Protein Domain Annotations
Cited by: 18
Author(s): Hai Fang
Software Mentions: 11
Published: almost 10 years ago

10.1186/s13321-015-0094-2

RRegrs: an R package for computer-aided model selection with multiple regression models
Cited by: 40
Author(s): Georgia Tsiliki, Cristian R. Munteanu, José A. Seoane, Carlos Fernández-Lozano, Haralambos Sarimveis, Egon Willighagen
Software Mentions: 10
Published: about 9 years ago

10.1128/mSystems.00081-18

Epstein-Barr Virus-Positive Cancers Show Altered B-Cell Clonality
Cited by: 16
Author(s): Sara R. Selitsky, David Marron, Lisle E. Mose, Joel S. Parker, Dirk P. Dittmer
Software Mentions: 9
Published: almost 6 years ago

10.1371/journal.pcbi.1008742

Wide range of metabolic adaptations to the acquisition of the Calvin cycle revealed by comparison of microbial genomes
Cited by: 11
Author(s): Johannes Asplund-Samuelsson, Elton P. Hudson
Software Mentions: 9
Published: over 3 years ago

10.1371/journal.pone.0196865

Predicting potential drug-drug interactions on topological and semantic similarity features using statistical learning
Cited by: 89
Author(s): Andrej Kastrin, Polonca Ferk, Brane Leskošek
Software Mentions: 8
Published: over 6 years ago

10.1186/1471-2164-15-284

ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases
Cited by: 743
Author(s): Li Shen, Ning‐Yi Shao, Xiaochuan Liu, Eric J. Nestler
Software Mentions: 8
Published: over 10 years ago

10.4056/sigs.3377516

Metagenomes of tropical soil-derived anaerobic switchgrass-adapted consortia with and without iron.
Cited by: 8
Author(s): Kristen M. DeAngelis, Patrik D’haeseleer, Dylan Chivian, Blake A. Simmons, Adam P. Arkin, Konstantinos Mavromatis, Stephanie Malfatti, Susannah G. Tringe, Terry C. Hazen
Software Mentions: 7
Published: over 11 years ago

10.1155/2019/8418760

Integrative Deep Learning for Identifying Differentially Expressed (DE) Biomarkers
Cited by: 8
Author(s): Jayeon Lim, SoYoun Bang, Jiyeon Kim, Cheolyong Park, JunSang Cho, Sunghwan Kim
Software Mentions: 7
Published: almost 5 years ago

10.1186/1471-2105-14-S5-S10

An optimized algorithm for detecting and annotating regional differential methylation
Cited by: 101
Author(s): Shengyong Li, Francine E. Garrett-Bakelman, Altuna Akalin, Paul Zumbo, Ross L. Levine, Bik To, Ian D. Lewis, Anna L. Brown, Richard J. D’Andrea, Ari Melnick, Christopher E. Mason
Software Mentions: 6
Published: over 11 years ago

10.1371/journal.pone.0206862

Optimal intensive care outcome prediction over time using machine learning
Cited by: 64
Author(s): Christopher Meiring, Abhishek Dixit, Steve Harris, Niall MacCallum, David Brealey, Peter Watkinson, Andrew Jones, Simon Ashworth, Richard Beale, Stephen Brett, Mervyn Singer, Ari Ercole
Software Mentions: 6
Published: almost 6 years ago

10.1186/s12874-017-0383-8

A comparison of the conditional inference survival forest model to random survival forests based on a simulation study as well as on two applications with time-to-event data
Cited by: 50
Author(s): Justine B. Nasejje, Henry Mwambi, Keertan Dheda, Maia Lesosky
Software Mentions: 5
Published: about 7 years ago

10.7717/peerj.7075

Visual complexity modelling based on image features fusion of multiple kernels
Cited by: 14
Author(s): Carlos Fernández-Lozano, Adrián Carballal, Penousal Machado, Andréa Cynthia Santos, Juan Romero
Software Mentions: 5
Published: about 5 years ago

10.7717/peerj.1720

A comparison of clustering methods for biogeography with fossil datasets
Cited by: 11
Author(s): Matthew J. Vavrek
Software Mentions: 4
Published: over 8 years ago

10.1186/s12864-017-4340-z

Discovery of cell-type specific DNA motif grammar in cis-regulatory elements using random Forest
Cited by: 15
Author(s): Xin Wang, Peijie Lin, Joshua W. K. Ho
Software Mentions: 3
Published: over 6 years ago

10.1186/1756-0381-4-24

An R package implementation of multifactor dimensionality reduction
Cited by: 25
Author(s): Stacey J. Winham, Alison A. Motsinger‐Reif
Software Mentions: 3
Published: about 13 years ago

10.7554/eLife.34848

Using paired serology and surveillance data to quantify dengue transmission and control during a large outbreak in Fiji
Cited by: 23
Author(s): Adam J. Kucharski, Mike Kama, Conall Watson, Maïté Aubry, Sebastian Funk, Alasdair D Henderson, Oliver J. Brady, Jessica Vanhomwegen, Jean-Claude Manuguerra, Colleen L Lau, W. John Edmunds, John Aaskov, Eric J. Nilles, Van-Mai Cao-Lormeau, Stephane Hué, Martin L. Hibberd
Software Mentions: 3
Published: about 6 years ago

10.1371/journal.pone.0184382

Plasma sterols and depressive symptom severity in a population-based cohort
Cited by: 10
Author(s): Bercin Kutluk Cenik, Can Cenik, M Snyder, E. Sherwood Brown
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pbio.2004974

Timescales of influenza A/H3N2 antibody dynamics
Cited by: 39
Author(s): Adam J. Kucharski, Justin Lessler, Derek A. T. Cummings, Steven Riley
Software Mentions: 2
Published: about 6 years ago

Ecosyste.ms: Papers

Projects: cran: doMC

Papers Mentioning doMC 27