Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2164-15-284

https://doi.org/10.1186/1471-2164-15-284

ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases

Cited by: 743
Author(s): Li Shen, Ning‐Yi Shao, Xiaochuan Liu, Eric J. Nestler
Published: almost 11 years ago

Software Mentions 8

bioconductor: BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs
Papers that mentioned: 47
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Papers that mentioned: 138
bioconductor: rtracklayer
R interface to genome annotation files and the UCSC genome browser
Papers that mentioned: 107
bioconductor: ShortRead
FASTQ input and manipulation
Papers that mentioned: 119
cran: doMC
Foreach Parallel Adaptor for 'parallel'
Papers that mentioned: 27
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
pypi: MACS
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,233
pypi: RLE
RLE - RunLengthEncoding package for data compression
Papers that mentioned: 9