Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1009291

https://doi.org/10.1371/journal.pgen.1009291

Increased virulence of Puccinia coronata f. sp.avenae populations through allele frequency changes at multiple putative Avr loci

Cited by: 30
Author(s): Marisa E. Miller, Eric S. Nazareno, Susan M. Rottschaefer, Jakob Riddle, Daniel A. Pereira, Feng Li, Hoa Nguyen-Phuc, Eva C Henningsen, Antoine Persoons, Diane G. O. Saunders, Eva H. Stukenbrock, Peter N. Dodds, Shahryar F. Kianian, Melania Figueroa
Published: almost 4 years ago

Software Mentions 13

bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: qvalue
Q-value estimation for false discovery rate control
Papers that mentioned: 248
cran: adegenet
Exploratory Analysis of Genetic and Genomic Data
Papers that mentioned: 767
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
cran: ggridges
Ridgeline Plots in 'ggplot2'
Papers that mentioned: 53
cran: PopGenome
An Efficient Swiss Army Knife for Population Genomic Analyses
Papers that mentioned: 62
cran: poppr
Genetic Analysis of Populations with Mixed Reproduction
Papers that mentioned: 251
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
cran: UpSetR
A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Papers that mentioned: 319
cran: vcfR
Manipulate and Visualize VCF Data
Papers that mentioned: 62
pypi: khmer
khmer k-mer counting library
Papers that mentioned: 110
pypi: vcfstats
Powerful statistics for VCF files
Papers that mentioned: 4