Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: adegenet

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/adegenet

Exploratory Analysis of Genetic and Genomic Data
43 versions
Latest release: almost 2 years ago
26 dependent packages
7,146 downloads last month

Papers Mentioning adegenet 767

10.1371/journal.pone.0243927
A workflow with R: Phylogenetic analyses and visualizations using mitochondrial cytochrome b gene sequences
Cited by: 13
Author(s): Emine Toparslan, Kemal Karabağ, Uğur Bilge
Software Mentions: 24
Published: about 4 years ago
10.1002/ece3.5763
Sex matters: Otolith shape and genomic variation in deacon rockfish (<i>Sebastes diaconus</i>)
Cited by: 18
Author(s): Felix Vaux, Leif K. Rasmuson, Lisa A. Kautzi, Polly S. Rankin, Matthew T. O. Blume, Kelly Lawrence, Sandra Bohn, Kathleen G. O’Malley
Software Mentions: 17
Published: about 5 years ago
10.1111/eva.13202
Adaptive markers distinguish North and South Pacific Albacore amid low population differentiation
Cited by: 15
Author(s): Felix Vaux, Sandra Bohn, John R. Hyde, Kathleen G. O’Malley
Software Mentions: 15
Published: almost 4 years ago
10.1371/journal.pone.0240935
The sockeye salmon genome, transcriptome, and analyses identifying population defining regions of the genome
Cited by: 24
Author(s): Kris A. Christensen, Eric B. Rondeau, David R. Minkley, Dionne Sakhrani, Carlo A. Biagi, Anne-Marie Flores, Ruth E. Withler, Scott A. Pavey, Terry D. Beacham, Theresa Godin, Eric B. Taylor, Michael A. Russello, Robert H. Devlin, Ben F. Koop
Software Mentions: 15
Published: about 4 years ago
10.1093/molbev/msab063
Extensive Genome-Wide Phylogenetic Discordance Is Due to Incomplete Lineage Sorting and Not Ongoing Introgression in a Rapidly Radiated Bryophyte Genus
Cited by: 42
Author(s): Olena Meleshko, Michael D. Martin, Thorfinn Sand Korneliussen, C. Schluechter, P. Lamkowski, Jeremy Schmutz, Adam Healey, Bryan Piatkowski, A. Jonathan Shaw, David J. Weston, Kjell Ivar Flatberg, Péter Szövényi, Kristian Hassel, Hans K. Stenøien
Software Mentions: 14
Published: almost 4 years ago
10.1371/journal.pone.0225615
An indigenous Saccharomyces uvarum population with high genetic diversity dominates uninoculated Chardonnay fermentations at a Canadian winery
Cited by: 9
Author(s): Garrett C. McCarthy, Sydney Morgan, Jonathan T. Martiniuk, Brianne L. Newman, Stephanie McCann, Vivien Measday, Daniel M. Durall
Software Mentions: 14
Published: almost 4 years ago
10.1186/1471-2105-13-133
Bios2mds: an R package for comparing orthologous protein families by metric multidimensional scaling
Cited by: 30
Author(s): Julien Pelé, Jean Michel Bécu, Hervé Abdi, Marie Chabbert
Software Mentions: 14
Published: over 12 years ago
10.3389/fmicb.2021.709611
Breeding Strategy Shapes the Composition of Bacterial Communities in Female Nile Tilapia Reared in a Recirculating Aquaculture System
Cited by: 2
Author(s): Yousri Abdelhafiz, Jorge M. O. Fernandes, Simone Larger, Davide Albanese, Claudio Donati, Omid Jafari, Artem Nedoluzhko, Viswanath Kiron
Software Mentions: 14
Published: over 3 years ago
10.1371/journal.pgen.1009291
Increased virulence of Puccinia coronata f. sp.avenae populations through allele frequency changes at multiple putative Avr loci
Cited by: 30
Author(s): Marisa E. Miller, Eric S. Nazareno, Susan M. Rottschaefer, Jakob Riddle, Daniel A. Pereira, Feng Li, Hoa Nguyen-Phuc, Eva C Henningsen, Antoine Persoons, Diane G. O. Saunders, Eva H. Stukenbrock, Peter N. Dodds, Shahryar F. Kianian, Melania Figueroa
Software Mentions: 13
Published: almost 4 years ago
10.3389/fpls.2021.628439
The History of Lentil (Lens culinaris subsp. culinaris) Domestication and Spread as Revealed by Genotyping-by-Sequencing of Wild and Landrace Accessions
Cited by: 19
Author(s): Marta Liber, Isabel Margarida Duarte, Ana-Teresa Maia, Hugo R. Oliveira
Software Mentions: 13
Published: over 3 years ago
10.1111/eva.12965
Relative genomic impacts of translocation history, hatchery practices, and farm selection in Pacific oyster <i>Crassostrea gigas</i> throughout the Northern Hemisphere
Cited by: 11
Author(s): Ben J. G. Sutherland, Claire Rycroft, Anne‐Laure Ferchaud, Rob Saunders, Li Li, Sheng Liu, Amy M. Chan, Sarah P. Otto, Curtis A. Suttle, Kristina M. Miller
Software Mentions: 13
Published: over 4 years ago
10.1371/journal.pone.0229330
StructuRly: A novel shiny app to produce comprehensive, detailed and interactive plots for population genetic analysis
Cited by: 22
Author(s): Nicola G. Criscuolo, Claudia Angelini
Software Mentions: 12
Published: almost 5 years ago
10.7717/peerj.11534
<i>AlleleShift:</i> an R package to predict and visualize population-level changes in allele frequencies in response to climate change
Cited by: 5
Author(s): Roeland Kindt
Software Mentions: 12
Published: over 3 years ago
10.1371/journal.pntd.0007061
Population genetic structure and geographical variation in Neotricula aperta (Gastropoda: Pomatiopsidae), the snail intermediate host of Schistosoma mekongi (Digenea: Schistosomatidae)
Cited by: 2
Author(s): Stephen W. Attwood, Liang Liu, Guan-Nan Huo
Software Mentions: 12
Published: almost 6 years ago
10.7717/peerj.4152
Population structure and phenotypic variation of<i>Sclerotinia sclerotiorum</i>from dry bean (<i>Phaseolus vulgaris</i>) in the United States
Cited by: 28
Author(s): Zhian N. Kamvar, Bimal S. Amaradasa, Rachana Jhala, Serena McCoy, James R. Steadman, Sydney E. Everhart
Software Mentions: 11
Published: about 7 years ago
10.1111/eva.13274
SNP analyses and acoustic tagging reveal multiple origins and widespread dispersal of invasive brown trout in the Falkland Islands
Cited by: 2
Author(s): Jessica F. Minett, Carlos García de Leániz, Halina Sobolewska, Paul Brickle, Glenn T. Crossin, Sofía Consuegra
Software Mentions: 11
Published: over 3 years ago
10.1002/ece3.7515
Forest <i>Saccharomyces paradoxus</i> are robust to seasonal biotic and abiotic changes
Cited by: 4
Author(s): Primrose J. Boynton, Dominika Wloch‐Salamon, Doreen Landermann, Eva H. Stukenbrock
Software Mentions: 11
Published: over 3 years ago
10.3390/genes12040503
Genomic and Phenotypic Diversity of Cultivated and Wild Tomatoes with Varying Levels of Heat Tolerance
Cited by: 10
Author(s): Mathieu Anatole Tele Ayenan, Agyemang Danquah, Paterne A. Agre, Peter Hanson, Isaac Asante, Eric Danquah
Software Mentions: 10
Published: over 3 years ago
10.1111/eva.13143
Population genomics and history of speciation reveal fishery management gaps in two related redfish species ( <i>Sebastes mentella </i> and <i>Sebastes fasciatus</i> )
Cited by: 20
Author(s): Laura Benestan, Quentin Rougemont, Caroline Senay, Éric Normandeau, Éric Parent, Rick M. Rideout, Louis Bernatchez, Yvan Lambert, Céline Audet, Gérard Parent
Software Mentions: 10
Published: about 4 years ago
10.1534/g3.117.300131
CONE: Community Oriented Network Estimation Is a Versatile Framework for Inferring Population Structure in Large-Scale Sequencing Data
Cited by: 12
Author(s): Markku Kuismin, Jon Ahlinder, Mikko Sillanpää
Software Mentions: 10
Published: about 7 years ago
10.1038/s41437-019-0204-4
Extreme mito-nuclear discordance in a peninsular lizard: the role of drift, selection, and climate
Cited by: 24
Author(s): Pedro Henrique Bernardo, Santiago Sánchez‐Ramírez, Santiago J. Sánchez-Pacheco, Sergio Ticul Álvarez-Castañeda, Eduardo Felipe Aguilera-Miller, Fausto R. Méndez–de la Cruz, Robert W. Murphy
Software Mentions: 10
Published: almost 6 years ago
10.1002/ece3.7563
The interaction of resource use and gene flow on the phenotypic divergence of benthic and pelagic morphs of Icelandic Arctic charr (<i>Salvelinus alpinus</i>)
Cited by: 10
Author(s): Matthew K. Brachmann, Kevin J. Parsons, Skúli Skúlason, Moira M. Ferguson
Software Mentions: 10
Published: over 3 years ago
10.3389/fpls.2020.587426
Genome-Wide DArTSeq Genotyping and Phenotypic Based Assessment of Within and Among Accessions Diversity and Effective Sample Size in the Diverse Sorghum, Pearl Millet, and Pigeonpea Landraces
Cited by: 13
Author(s): Victor Allan, Mani Vetriventhan, R. Senthil, S. Geetha, Santosh Deshpande, Abhishek Rathore, Vinod Kumar, Prabhat Kumar Singh, Surender Reddymalla, V. C. R. Azevedo
Software Mentions: 10
Published: about 4 years ago
10.1371/journal.pone.0131435
Limitations of Climatic Data for Inferring Species Boundaries: Insights from Speckled Rattlesnakes
Cited by: 30
Author(s): Jesse M. Meik, Jeffrey W. Streicher, A. Michelle Lawing, Oscar Flores‐Villela, Matthew K. Fujita
Software Mentions: 10
Published: over 9 years ago
10.1186/s12915-021-01029-w
Global population genetic structure and demographic trajectories of the black soldier fly, Hermetia illucens
Cited by: 36
Author(s): Cengiz Kaya, Tomas N Generalovic, Gunilla Ståhls, Martin Hauser, Ana Clariza Samayoa, Carlos Gustavo Nunes-Silva, Heather Roxburgh, Jens Wohlfahrt, Ebenezer Ato Ewusie, Marc Kenis, Yupa Hanboonsong, Jesús Orozco, Nancy Carrejo, Satoshi Nakamura, Laura Gasco, Santos Rojo, Chrysantus M. Tanga, Rudolf Meier, Clint Rhode, Christine Picard, Chris D. Jiggins, Florian Leiber, Jeffery K. Tomberlin, Martin Hasselmann, Wolf U. Blanckenhorn, Martin Kapun, Christoph Sandrock
Software Mentions: 10
Published: over 3 years ago
10.1093/aob/mcy221
Root and shoot variation in relation to potential intermittent drought adaptation of Mesoamerican wild common bean (Phaseolus vulgaris L.)
Cited by: 38
Author(s): Jorge C. Berny Mier y Teran, Enéas Ricardo Konzen, Viviana Medina, Antonia Palkovic, Andrea Ariani, Siu Mui Tsai, Matthew E. Gilbert, Paul Gepts
Software Mentions: 10
Published: almost 6 years ago
10.1002/ece3.8018
Delimitation despite discordance: Evaluating the species limits of a confounding species complex in the face of mitonuclear discordance
Cited by: 8
Author(s): Thomas J. Firneno, Justin R. O’Neill, Michael W. Itgen, Timothy A. Kihneman, Josiah H. Townsend, Matthew K. Fujita
Software Mentions: 9
Published: over 3 years ago
10.1371/journal.pone.0179570
Multi-level, multi-scale resource selection functions and resistance surfaces for conservation planning: Pumas as a case study
Cited by: 77
Author(s): Katherine A. Zeller, T. Winston Vickers, Holly B. Ernest, Walter M. Boyce
Software Mentions: 9
Published: over 7 years ago
10.1002/ece3.6214
Genotyping‐by‐sequencing and ecological niche modeling illuminate phylogeography, admixture, and Pleistocene range dynamics in quaking aspen (<i>Populus tremuloides</i>)
Cited by: 12
Author(s): Justin C. Bagley, Neander Marcel Heming, Eliécer E. Gutiérrez, Upendra Kumar Devisetty, Karen E. Mock, Andrew J. Eckert, Steven H. Strauss
Software Mentions: 9
Published: over 4 years ago
10.1002/ece3.5070
Next‐generation phylogeography of the cockle<i>Cerastoderma glaucum</i>: Highly heterogeneous genetic differentiation in a lagoon species
Cited by: 10
Author(s): Ludmila Sromek, Didier Forcioli, Rafał Lasota, Paola Furla, Maciej Wołowicz
Software Mentions: 9
Published: over 5 years ago
10.1111/evo.13072
Niche divergence facilitated by fine‐scale ecological partitioning in a recent cichlid fish adaptive radiation
Cited by: 37
Author(s): Antonia G. P. Ford, Lukas Rüber, Jason Newton, Kanchon K. Dasmahapatra, J.D. Balarin, Kristoffer Bruun, Julia J. Day
Software Mentions: 9
Published: about 8 years ago
10.7554/eLife.69249
A population-level invasion by transposable elements triggers genome expansion in a fungal pathogen
Cited by: 38
Author(s): Ursula Oggenfuss, Thomas Badet, Thomas Wicker, Fanny E. Hartmann, Navreet Singh, Leen Nanchira Abraham, Petteri Karisto, Tiziana Vonlanthen, Christopher C. Mundt, Bruce A. McDonald, Daniel Croll
Software Mentions: 9
Published: over 3 years ago
10.1093/molbev/msaa266
Genomic Adaptations to Salinity Resist Gene Flow in the Evolution of Floridian Watersnakes
Cited by: 10
Author(s): Rhett M. Rautsaw, Tristan D. Schramer, Rachel Acuña, Lindsay N Arick, Mark DiMeo, Kathryn P. Mercier, Michael Schrum, Andrew J. Mason, Mark J. Margres, Jason L. Strickland, Christopher L. Parkinson
Software Mentions: 9
Published: about 4 years ago
10.3389/fpls.2018.01673
Genetic and Pathogenicity Diversity of Aphanomyces euteiches Populations From Pea-Growing Regions in France
Cited by: 19
Author(s): Anne Quillévéré‐Hamard, Gwenola Le Roy, Anne Moussart, Alain Baranger, Didier Andrivon, Marie‐Laure Pilet‐Nayel, Christophe Le May
Software Mentions: 9
Published: about 6 years ago
10.1038/s41437-021-00418-9
Population genomics and conservation management of a declining tropical rodent
Cited by: 9
Author(s): Brenton von Takach, Cara E. Penton, Brett P. Murphy, Ian J. Radford, Hugh F. Davies, Brydie M. Hill, Sam C. Banks
Software Mentions: 9
Published: almost 4 years ago
10.1111/eva.12761
Pervasive admixture between eucalypt species has consequences for conservation and assisted migration
Cited by: 15
Author(s): Brenton von Takach, Cameron Jack, Justin O. Borevitz, David B. Lindenmayer, Sam C. Banks
Software Mentions: 8
Published: almost 6 years ago
10.1111/cobi.13602
Evaluating surrogates of genetic diversity for conservation planning
Cited by: 11
Author(s): Jeffrey O. Hanson, Ana Veríssimo, Guillermo Velo‐Antón, Adam Marques, Miguel Camacho‐Sanchez, Íñigo Martínez‐Solano, Helena Gonçalves, Fernando Sequeira, Hugh P. Possingham, Sílvia B. Carvalho
Software Mentions: 8
Published: about 4 years ago
10.1002/ece3.7428
An endangered flightless grasshopper with strong genetic structure maintains population genetic variation despite extensive habitat loss
Cited by: 15
Author(s): Ary A. Hoffmann, Vanessa L. White, Moshe Jasper, Hiromi Yagui, Steve Sinclair, Michael R. Kearney
Software Mentions: 8
Published: over 3 years ago
10.1186/s12983-018-0297-2
Nutritional quality modulates trait variability
Cited by: 5
Author(s): Adrian Brückner, Romina Schuster, Katja Wehner, Michael Heethoff
Software Mentions: 8
Published: about 6 years ago
10.3390/genes11111270
Multi-Trait Genomic Prediction of Yield-Related Traits in US Soft Wheat under Variable Water Regimes
Cited by: 23
Author(s): Jia Guo, Jahangir Khan, Sumit Pradhan, Dipendra Shahi, Naeem Khan, Muhsin Avci, Jordan C. McBreen, Stephen A. Harrison, Gina Brown-Guedira, J. Paul Murphy, J. W. Johnson, Maryati Mohamed, R. Esten Mason, Amir M. H. Ibrahim, Russel Sutton, Carl A. Griffey, Ali Babar
Software Mentions: 8
Published: about 4 years ago
10.1371/journal.pone.0231744
Combining genetic and demographic monitoring better informs conservation of an endangered urban snake
Cited by: 11
Author(s): Dustin A. Wood, Jonathan P. Rose, Brian J. Halstead, Ricka E. Stoelting, Karen E. Swaim, Amy G. Vandergast
Software Mentions: 8
Published: over 4 years ago
10.1111/eva.12932
Fine‐scale seascape genomics of an exploited marine species, the common cockle <i>Cerastoderma edule</i>, using a multimodelling approach
Cited by: 25
Author(s): Ilaria Coscia, Sophie B. Wilmes, Joseph E. Ironside, Alice Goward‐Brown, Enda O’Dea, Shelagh K. Malham, Allan D. McDevitt, Peter Robins
Software Mentions: 8
Published: almost 5 years ago
10.1002/ece3.4535
Determining social and population structures requires multiple approaches: A case study of the desert ant<i>Cataglyphis israelensis</i>
Cited by: 3
Author(s): Tali Reiner Brodetzki, Abraham Hefetz
Software Mentions: 8
Published: about 6 years ago
10.3389/fgene.2018.00123
Inferring Variation in Copy Number Using High Throughput Sequencing Data in R
Cited by: 15
Author(s): Brian J. Knaus, Niklaus J. Grünwald
Software Mentions: 8
Published: over 6 years ago
10.1186/s12870-020-02739-z
Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis
Cited by: 7
Author(s): Massimiliano Trenti, Silvia Lorenzi, P. Bianchedi, Daniele Grossi, O. Failla, M. S. Grando, F. Emanuelli
Software Mentions: 8
Published: almost 4 years ago
10.1002/ece3.5597
Population structure, connectivity, and demographic history of an apex marine predator, the bull shark<i>Carcharhinus leucas</i>
Cited by: 16
Author(s): Agathe Pirog, Virginie Ravigné, Michaël C. Fontaine, Adrien Rieux, Aude Gilabert, Geremy Cliff, Éric Clua, Ryan Daly, Michael R. Heithaus, Jérémy J. Kiszka, Philip Matich, John Nevill, Amy F. Smoothey, Andrew J. Temple, Per Berggren, Sébastien Jaquemet, Hélène Magalon
Software Mentions: 8
Published: about 5 years ago
10.1038/s41598-017-09154-9
Analysis of spatial genetic variation reveals genetic divergence among populations of Primula veris associated to contrasting habitats
Cited by: 3
Author(s): Pablo Deschepper, Rein Brys, Miguel A. Fortuna, Hans Jacquemyn
Software Mentions: 8
Published: over 7 years ago
10.1002/ece3.7211
Investigating the morphological and genetic divergence of arctic char ( <i>Salvelinus alpinus)</i> populations in lakes of arctic Alaska
Cited by: 3
Author(s): Stephen L. Klobucar, Jessica A. Rick, Elizabeth G. Mandeville, Catherine E. Wagner, Phaedra Budy
Software Mentions: 8
Published: almost 4 years ago
10.1186/s12711-019-0454-x
Sibship assignment to the founders of a Bangladeshi Catla catla breeding population
Cited by: 8
Author(s): Matthew Hamilton, Wagdy Mekkawy, John A. H. Benzie
Software Mentions: 8
Published: over 5 years ago
10.1038/s41598-020-69160-2
Individual-based population genomics reveal different drivers of adaptation in sympatric fish
Cited by: 10
Author(s): Héctor Torrado, Carlos Carreras, Núria Raventós, Enrique Macpherson, Marta Pascual
Software Mentions: 8
Published: over 4 years ago
10.1186/s12862-018-1251-9
Molecular variation across populations of a widespread North American firefly, Photinus pyralis, reveals that coding changes do not underlie flash color variation or associated visual sensitivity
Cited by: 12
Author(s): Sarah E. Lower, Kathrin F. Stanger‐Hall, David W. Hall
Software Mentions: 8
Published: over 6 years ago
10.1002/ece3.5792
Population genetics of<i>Anopheles koliensis</i>through Papua New Guinea: New cryptic species and landscape topography effects on genetic connectivity
Cited by: 2
Author(s): Luke Ambrose, Jeffrey O. Hanson, Cynthia Riginos, Weixin Xu, Sarah L. Fordyce, Robert D. Cooper, Nigel W. Beebe
Software Mentions: 8
Published: about 5 years ago
10.1186/s12864-018-5145-4
Dissection of the molecular bases of genotype x environment interactions: a study of phenotypic plasticity of Saccharomyces cerevisiae in grape juices
Cited by: 21
Author(s): Emilien Peltier, Vikas Sharma, Maria Martí Raga, Miguel Roncoroni, Margaux Bernard, Vladimir Jiranek, Yves Gibon, Philippe Marullo
Software Mentions: 7
Published: about 6 years ago
10.1371/journal.pgen.1008593
Parallel and nonparallel genomic responses contribute to herbicide resistance in Ipomoea purpurea, a common agricultural weed
Cited by: 35
Author(s): Megan Van Etten, Kristin M. Lee, Shu‐Mei Chang, Regina S. Baucom
Software Mentions: 7
Published: almost 5 years ago
10.3390/cells10071743
Ancestral Sperm Ecotypes Reveal Multiple Invasions of a Non-Native Fish in Northern Europe
Cited by: 6
Author(s): León Green, Apostolos Apostolou, Ellika Faust, Kajsa Palmqvist, Jane Behrens, Jonathan N. Havenhand, Erica H. Leder, Charlotta Kvarnemo
Software Mentions: 7
Published: over 3 years ago
10.1038/s42003-020-01482-3
Evaluating insect-host interactions as a driver of species divergence in palm flower weevils
Cited by: 11
Author(s): Bruno A. S. de Medeiros, Brian D. Farrell
Software Mentions: 7
Published: about 4 years ago
10.1111/mec.13644
Unidirectional diploid–tetraploid introgression among British birch trees with shifting ranges shown by restriction site‐associated markers
Cited by: 68
Author(s): Jasmin Zohren, Nian Wang, Igor Kardailsky, James S. Borrell, Anika Joecker, Richard A. Nichols, Richard J. A. Buggs
Software Mentions: 7
Published: over 8 years ago
10.3390/plants10050998
Sources of Resistance to Common Bacterial Blight and Charcoal Rot Disease for the Production of Mesoamerican Common Beans in the Southern United States
Cited by: 5
Author(s): Daniel Ambachew, Jacqueline Joshua, Margaret T. Mmbaga, Matthew W. Blair
Software Mentions: 7
Published: over 3 years ago
10.3389/fpls.2020.00685
Hybridization Between Yuccas From Baja California: Genomic and Environmental Patterns
Cited by: 9
Author(s): María Clara Arteaga, Rafael Bello-Bedoy, Jaime Gasca-Pineda
Software Mentions: 7
Published: over 4 years ago
10.3389/fpls.2018.00029
Population Genetic Structure in Glyphosate-Resistant and -Susceptible Palmer Amaranth (Amaranthus palmeri) Populations Using Genotyping-by-sequencing (GBS)
Cited by: 26
Author(s): Anita Küpper, Harish Manmathan, Darci A. Giacomini, Eric Patterson, William B. McCloskey, Todd A. Gaines
Software Mentions: 7
Published: almost 7 years ago
10.1371/journal.pone.0224920
Cassava yield traits predicted by genomic selection methods
Cited by: 31
Author(s): Luciano Rogério Braatz de Andrade, Massáine Bandeira e Sousa, E. J. de Oliveira, Marcos Deon Vilela de Resende, Camila Ferreira Azevedo
Software Mentions: 7
Published: about 5 years ago
10.1002/ece3.4905
Comparing RADseq and microsatellites for estimating genetic diversity and relatedness — Implications for brown trout conservation
Cited by: 111
Author(s): Alexandre Lemopoulos, Jenni M. Prokkola, Silva Uusi‐Heikkilä, Anti Vasemägi, Ari Huusko, Pekka Hyvärinen, Marja‐Liisa Koljonen, Jarmo Koskiniemi, Anssi Vainikka
Software Mentions: 7
Published: almost 6 years ago
10.7717/peerj.281
<i>Poppr</i>: an R package for genetic analysis of populations with clonal, partially clonal, and/or sexual reproduction
Cited by: 1,961
Author(s): Zhian N. Kamvar, Javier F. Tabima, Niklaus J. Grünwald
Software Mentions: 7
Published: almost 11 years ago
10.1371/journal.pone.0158911
Wolves Recolonizing Islands: Genetic Consequences and Implications for Conservation and Management
Cited by: 8
Author(s): Liivi Plumer, Marju Keis, Jaanus Remm, Maris Hindrikson, I. Jõgisalu, Peep Männil, Marko Kübarsepp, Urmas Saarma
Software Mentions: 7
Published: over 8 years ago
10.1186/s12862-019-1510-4
Geographic isolation and climatic variability contribute to genetic differentiation in fragmented populations of the long-lived subalpine conifer Pinus cembra L. in the western Alps
Cited by: 26
Author(s): Endre György Tóth, Francine Tremblay, Johann M. Housset, Yves Bergeron, Christopher Carcaillet
Software Mentions: 7
Published: about 5 years ago
10.1186/s12870-021-03142-y
Maximizing genetic representation in seed collections from populations of self and cross-pollinated banana wild relatives
Cited by: 5
Author(s): Simon Kallow, Bart Panis, Dang Toan Vu, Tuong Dang Vu, J. Paofa, Arne Mertens, Rony Swennen, Steven Janssens
Software Mentions: 7
Published: over 3 years ago
10.1186/s12870-016-0754-z
Genetic diversity, linkage disequilibrium and power of a large grapevine (Vitis vinifera L) diversity panel newly designed for association studies
Cited by: 72
Author(s): Stéphane Nicolas, Jean‐Pierre Péros, Thierry Lacombe, Amandine Launay, Marie‐Christine Le Paslier, Aurélie Berard, Brigitte Mangin, Sophie Valière, Frédéric Martins, Loïc Le Cunff, Valérie Laucou, Roberto Baciliéri, Alexis Dereeper, Philippe Chatelet, Patrice This, Agnès Doligez
Software Mentions: 7
Published: almost 9 years ago
10.1002/ece3.5111
Genetic population structure and demography of an apex predator, the tiger shark<i>Galeocerdo cuvier</i>
Cited by: 21
Author(s): Agathe Pirog, Sébastien Jaquemet, Virginie Ravigné, Geremy Cliff, Éric Clua, Bonnie J. Holmes, Nigel E. Hussey, John Nevill, Andrew J. Temple, Per Berggren, Laurent Vigliola, Hélène Magalon
Software Mentions: 7
Published: over 5 years ago
10.1186/s13071-019-3860-6
Two-year longitudinal survey reveals high genetic diversity of Schistosoma mansoni with adult worms surviving praziquantel treatment at the start of mass drug administration in Uganda
Cited by: 18
Author(s): Christina L. Faust, Marco Crotti, Moses Arinaitwe, David Oguttu, Aidah Wamboko, Moses Adriko, Elizabeth K. Adekanle, Narcis B. Kabatereine, Edridah M. Tukahebwa, Alice Norton, Charlotte Gower, Joanne P. Webster, Poppy H. L. Lamberton
Software Mentions: 7
Published: about 5 years ago
10.1111/eva.12852
Temporal variation in spatial genetic structure during population outbreaks: Distinguishing among different potential drivers of spatial synchrony
Cited by: 27
Author(s): Jérémy Larroque, Simon Legault, Rob C. Johns, Lisa M. Lumley, Michel Cusson, Sébastien Renaut, Roger C. Levesque, Patrick M. A. James
Software Mentions: 7
Published: over 5 years ago
10.1038/s41598-019-39669-2
Parallel colonization of subalpine habitats in the central European mountains by Primula elatior
Cited by: 13
Author(s): Veronika Konečná, Michael Nowak, Filip Kolář
Software Mentions: 7
Published: almost 6 years ago
10.1186/1471-2148-14-61
Introgressive hybridization and latitudinal admixture clines in North Atlantic eels
Cited by: 15
Author(s): Sébastien Wielgoss, Aude Gilabert, Axel Meyer, Thierry Wirth
Software Mentions: 7
Published: over 10 years ago
10.1038/s41598-019-38532-8
Taraxacum kok-saghyz (rubber dandelion) genomic microsatellite loci reveal modest genetic diversity and cross-amplify broadly to related species
Cited by: 13
Author(s): Marcin Nowicki, Yichen Zhao, Sarah L. Boggess, Helge Fluess, Miriam Payá‐Milans, Margaret Staton, Logan C. Houston, Ðenita Hadziabdic, Robert N. Trigiano
Software Mentions: 7
Published: almost 6 years ago
10.1038/s41598-020-67397-5
Genome-wide patterns of differentiation over space and time in the Queensland fruit fly
Cited by: 14
Author(s): Ángel David Popa-Báez, Renee A. Catullo, Siu Fai Lee, Heng Lin Yeap, Roslyn Mourant, Michael Frommer, J. A. Sved, Emilie Cameron, Owain Edwards, Phillip W. Taylor, John G. Oakeshott
Software Mentions: 7
Published: over 4 years ago
10.1186/s12859-020-03945-0
mixIndependR: a R package for statistical independence testing of loci in database of multi-locus genotypes
Cited by: 1
Author(s): Bing Song, August E. Woerner, John V. Planz
Software Mentions: 7
Published: almost 4 years ago
10.3390/genes12050637
Insight into the Genetic Population Structure of Wild Red Foxes in Poland Reveals Low Risk of Genetic Introgression from Escaped Farm Red Foxes
Cited by: 2
Author(s): Heliodor Wierzbicki, Magdalena Zatoń‐Dobrowolska, Anna Mucha, Magdalena Moska
Software Mentions: 7
Published: over 3 years ago
10.1016/j.heliyon.2021.e06160
Genomic evidence supports the introgression between two sympatric stickleback species inhabiting the White Sea basin
Cited by: 4
Author(s): Artem Nedoluzhko, Fedor Sharko, Svetlana Tsygankova, Eugenia Boulygina, Amina S. Ibragimova, Anton Teslyuk, Jorge Galindo-Villegas, С. М. Расторгуев
Software Mentions: 7
Published: almost 4 years ago
10.1111/eva.12849
Single nucleotide polymorphisms reveal a genetic cline across the north‐east Atlantic and enable powerful population assignment in the European lobster
Cited by: 33
Author(s): Tom L. Jenkins, Charlie D. Ellis, Alexandros Triantafyllidis, Jamie R. Stevens
Software Mentions: 7
Published: over 5 years ago
10.7717/peerj.5660
Population genetics of the main population of brown bears in southwest Asia
Cited by: 37
Author(s): Hüseyin Ambarlı, Deniz Mengüllüoğlu, Jörns Fickel, Daniel W. Förster
Software Mentions: 7
Published: over 6 years ago
10.3390/plants9111446
The Genetic Diversity of Cranberry Crop Wild Relatives, Vaccinium macrocarpon Aiton and V. oxycoccos L., in the US, with Special Emphasis on National Forests
Cited by: 12
Author(s): Lorraine Rodríguez-Bonilla, Karen A. Williams, Fabian Rodríguez Bonilla, Daniel Matusinec, Andrew J. Maule, Kevin Coe, Eric Wiesman, Luis Díaz-Garcia, Juan Zalapa
Software Mentions: 6
Published: about 4 years ago
10.3390/genes11111387
GWAS Based on RNA-Seq SNPs and High-Throughput Phenotyping Combined with Climatic Data Highlights the Reservoir of Valuable Genetic Diversity in Regional Tomato Landraces
Cited by: 10
Author(s): Mónica Rodríguez, Alessandro Scintu, Chiara M. Posadinu, Youqiang Xu, Cuong Nguyen, Honghe Sun, Elena Bitocchi, Elisa Bellucci, Roberto Papa, Zhangjun Fei, James J. Giovannoni, Domenico Rau, Giovanna Attene
Software Mentions: 6
Published: about 4 years ago
10.1186/s12862-016-0766-1
Why do different oceanic archipelagos harbour contrasting levels of species diversity? The macaronesian endemic genus Pericallis (Asteraceae) provides insight into explaining the ‘Azores diversity Enigma’
Cited by: 4
Author(s): K. Jones, Sílvia Pérez‐Espona, J. Alfredo Reyes‐Betancort, David Pattinson, Juli Caujapé‐Castells, Simon J. Hiscock, Mark A. Carine
Software Mentions: 6
Published: about 8 years ago
10.1111/mpp.12819
Population genomics of an outbreak of the potato late blight pathogen,<i>Phytophthora infestans</i>, reveals both clonality and high genotypic diversity
Cited by: 14
Author(s): Sundy Maurice, Melanie Montes, Bent Nielsen, Lars Bødker, Michael D. Martin, Carina Grøntved Jønck, Rasmus Kjøller, Søren Rosendahl
Software Mentions: 6
Published: over 5 years ago
10.1186/s12862-014-0204-1
Strong genetic structure corresponds to small-scale geographic breaks in the Australian alpine grasshopper Kosciuscola tristis
Cited by: 16
Author(s): R. O. Slatyer, M. Nash, Adam D. Miller, Yoshinori Endo, Kate D. L. Umbers, Ary A. Hoffmann
Software Mentions: 6
Published: about 10 years ago
10.1002/ece3.6676
Hare's affairs: Lessons learnt from a noninvasive genetic monitoring for tracking mountain hare individuals
Cited by: 9
Author(s): Laura Schenker, Kurt Bollmann, Maik Rehnus, Sabine Brodbeck, Félix Gugerli
Software Mentions: 6
Published: over 4 years ago
10.3389/fpls.2018.01148
The Contribution of Neutral and Environmentally Dependent Processes in Driving Population and Lineage Divergence in Taiwania (Taiwania cryptomerioides)
Cited by: 8
Author(s): Yi Shao Li, Chih-Hsiung Chang, Chun‐Neng Wang, Philip Thomas, Jeng Der Chung, Shih Ying Hwang
Software Mentions: 6
Published: over 6 years ago
10.3390/life11060531
Microsatellite Loci Reveal Genetic Diversity of Asian Callery Pear (Pyrus calleryana) in the Species Native Range and in the North American Cultivars
Cited by: 5
Author(s): Shiwani Sapkota, Sarah L. Boggess, Robert N. Trigiano, William E. Klingeman, Ðenita Hadziabdic, David R. Coyle, Bode A. Olukolu, Ryan Kuster, Marcin Nowicki
Software Mentions: 6
Published: over 3 years ago
10.1002/ece3.6537
Species diversity and phylogeography of<i>Cornus kousa</i>(Asian dogwood) captured by genomic and genic microsatellites
Cited by: 3
Author(s): Marcin Nowicki, Logan C. Houston, Sarah L. Boggess, Anthony S. Aiello, Miriam Payá‐Milans, Margaret Staton, Mitsuhiro Hayashida, Masahiro Yamanaka, Shigetoshi Eda, Robert N. Trigiano
Software Mentions: 6
Published: over 4 years ago
10.1111/eva.12755
Into the weeds: Matching importation history to genetic consequences and pathways in two widely used biological control agents
Cited by: 16
Author(s): Julie V. Hopper, Kent F. McCue, Paul D. Pratt, Pierre Duchesne, Edwin D. Grosholz, Ruth A. Hufbauer
Software Mentions: 6
Published: almost 6 years ago
10.3389/fvets.2021.733357
Chytridiomycosis Outbreak in a Chilean Giant Frog (Calyptocephalella gayi) Captive Breeding Program: Genomic Characterization and Pathological Findings
Cited by: 5
Author(s): Mario Alvarado‐Rybak, Paz Acuña, Alexandra Peñafiel‐Ricaurte, Thomas R. Sewell, Simon J. O’Hanlon, Matthew C. Fisher, Andrés Valenzuela‐Sánchez, Andrew A. Cunningham, Claudio Soto‐Azat
Software Mentions: 6
Published: about 3 years ago
10.1002/ece3.4762
Functional connectivity and home range inferred at a microgeographic landscape genetics scale in a desert‐dwelling rodent
Cited by: 10
Author(s): Alejandro Flores‐Manzanero, Madisson A. Luna‐Bárcenas, Rodney J. Dyer, Ella Vázquez‐Domínguez
Software Mentions: 6
Published: about 6 years ago
10.1186/s12862-020-01721-5
Range and niche expansion through multiple interspecific hybridization: a genotyping by sequencing analysis of Cherleria (Caryophyllaceae)
Cited by: 2
Author(s): Abigail J. Moore, Jennifer A. Messick, Joachim W. Kadereit
Software Mentions: 6
Published: almost 4 years ago
10.1186/s12862-016-0702-4
Fine-scale genetic structure among greater sage-grouse leks in central Nevada
Cited by: 18
Author(s): Joshua P. Jahner, Daniel D. Gibson, Chava L. Weitzman, Erik J. Blomberg, James S. Sedinger, Thomas L. Parchman
Software Mentions: 6
Published: over 8 years ago
10.1371/journal.pone.0162325
Striking Phenotypic Variation yet Low Genetic Differentiation in Sympatric Lake Trout (Salvelinus namaycush)
Cited by: 18
Author(s): Kia Marin, Andrew Coon, Robert Spencer Carson, Paul V. Debes, Dylan J. Fraser
Software Mentions: 6
Published: about 8 years ago
10.1371/journal.pone.0186488
Global genotype flow in Cercospora beticola populations confirmed through genotyping-by-sequencing
Cited by: 17
Author(s): Niloofar Vaghefi, Julie R. Kikkert, Melvin D. Bolton, Linda E. Hanson, Gary A. Secor, Scot Nelson, Sarah J. Pethybridge
Software Mentions: 6
Published: about 7 years ago
10.1002/ece3.6927
Disjunction between canola distribution and the genetic structure of its recently described pest, the canola flower midge (<i>Contarinia brassicola</i>)
Cited by: 5
Author(s): Erin O. Campbell, Julian R. Dupuis, Jennifer Holowachuk, Shane Hladun, Meghan A. Vankosky, Boyd A. Mori
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pone.0031482
Seascape Genetics of a Globally Distributed, Highly Mobile Marine Mammal: The Short-Beaked Common Dolphin (Genus Delphinus)
Cited by: 82
Author(s): Ana Rita Amaral, Luciano B. Beheregaray, Kerstin Bilgmann, Dmitri Boutov, Luís Freitas, Kelly M. Robertson, Marina Sequeira, Karen A. Stockin, M. M. Coelho, Luciana M. Möller
Software Mentions: 6
Published: almost 13 years ago
10.1002/ece3.5516
Extensive genetic differentiation between recently evolved sympatric Arctic charr morphs
Cited by: 18
Author(s): Jóhannes Guðbrandsson, Kalina H. Kapralova, Sigríður Rut Franzdóttir, Þóra Margrét Bergsveinsdóttir, Völundur Hafstað, Zophonı́as O. Jónsson, Sigurður S. Snorrason, Arnar Pálsson
Software Mentions: 6
Published: over 5 years ago
10.1111/eva.13198
Spatial and temporal genetic variation in an exploited reef fish: The effects of exploitation on cohort genetic structure
Cited by: 2
Author(s): Zahra Salem Taboun, Ryan P. Walter, Jennifer R. Ovenden, Daniel D. Heath
Software Mentions: 6
Published: almost 4 years ago
10.1186/s13071-020-3924-7
Evidence for family-level variation of phenotypic traits in response to temperature of Brazilian Nyssorhynchus darlingi
Cited by: 2
Author(s): Virginia M. Chu, Maria Anice Mureb Sallum, Timothy E. Moore, Kevin J. Emerson, Carl D. Schlichting, Jan E. Conn
Software Mentions: 6
Published: almost 5 years ago