Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2105-13-133

https://doi.org/10.1186/1471-2105-13-133

Bios2mds: an R package for comparing orthologous protein families by metric multidimensional scaling

Cited by: 30
Author(s): Julien Pelé, Jean Michel Bécu, Hervé Abdi, Marie Chabbert
Published: over 12 years ago

Software Mentions 14

cran: ade4
Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences
Papers that mentioned: 809
cran: adegenet
Exploratory Analysis of Genetic and Genomic Data
Papers that mentioned: 767
cran: amap
Another Multidimensional Analysis Package
Papers that mentioned: 37
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: bios2mds
From Biological Sequences to Multidimensional Scaling
Papers that mentioned: 8
cran: e1071
Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien
Papers that mentioned: 419
cran: fasta
Fast Adaptive Shrinkage/Thresholding Algorithm
Papers that mentioned: 848
cran: rgl
3D Visualization Using OpenGL
Papers that mentioned: 156
cran: seqinr
Biological Sequences Retrieval and Analysis
Papers that mentioned: 110
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: amap
Automated mouse atlas propagation
Papers that mentioned: 37
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
Papers that mentioned: 848
pypi: kmeans
python wrapper for basic c implementation of kmeans
Papers that mentioned: 62