An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.1371/journal.pone.0243927

https://doi.org/10.1371/journal.pone.0243927

A workflow with R: Phylogenetic analyses and visualizations using mitochondrial cytochrome b gene sequences

Cited by: 13
Author(s): Emine Toparslan, Kemal Karabağ, Uğur Bilge
Published: over 4 years ago

Software Mentions 24

bioconductor: Biostrings
Efficient manipulation of biological strings
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bioconductor: ggtree
an R package for visualization of tree and annotation data
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bioconductor: msa
Multiple Sequence Alignment
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bioconductor: treeio
Base Classes and Functions for Phylogenetic Tree Input and Output
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cran: adegenet
Exploratory Analysis of Genetic and Genomic Data
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cran: ape
Analyses of Phylogenetics and Evolution
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cran: bio3d
Biological Structure Analysis
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cran: bios2mds
From Biological Sequences to Multidimensional Scaling
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cran: fasta
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cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
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cran: ips
Interfaces to Phylogenetic Software in R
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cran: knitr
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cran: pegas
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cran: rmarkdown
Dynamic Documents for R
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pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
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pypi: fas
FaaSpot Client
Papers that mentioned: 1
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pypi: fasta
The fasta python package enables you to deal with biological sequence files easily.
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Very Likely Science (80)
pypi: fastaq
fastAQ is a very and super lightweight package for working with FASTA/FASTQ sequences
Papers that mentioned: 15
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pypi: ips
UNKNOWN
Papers that mentioned: 10
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pypi: msa
Maven settings administrator
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pypi: PACE
Data Quality of Experimental Data
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pypi: packages
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pypi: stats
Calculator-style statistical functions
Papers that mentioned: 3,105
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pypi: treeio
A pure python parser for tree data format IO
Papers that mentioned: 32
Very Likely Science (65)