Ecosyste.ms: Papers

10.1371/journal.pone.0243927

A workflow with R: Phylogenetic analyses and visualizations using mitochondrial cytochrome b gene sequences
Cited by: 13
Author(s): Emine Toparslan, Kemal Karabağ, Uğur Bilge
Software Mentions: 24
Published: almost 4 years ago

10.1186/s12864-018-5166-z

RIVET: comprehensive graphic user interface for analysis and exploration of genome-wide translatomics data
Cited by: 17
Author(s): Amanda Ernlund, Robert J. Schneider, Kelly V. Ruggles
Software Mentions: 9
Published: about 6 years ago

10.1371/journal.pbio.1001555

The Geography of Recent Genetic Ancestry across Europe
Cited by: 318
Author(s): Peter L. Ralph, Graham Coop
Software Mentions: 7
Published: over 11 years ago

10.15252/emmm.201910812

Synthetic lethality between <i> <scp>VPS</scp> 4A </i> and <i> <scp>VPS</scp> 4B </i> triggers an inflammatory response in colorectal cancer
Cited by: 26
Author(s): Ewelina Szymańska, Paulina Nowak, Krzysztof Kolmus, Magdalena Cybulska, Krzysztof Goryca, Edyta Derezińska-Wołek, Anna Szumera‐Ciećkiewicz, Marta Brewinska‐Olchowik, Aleksandra Grochowska, Katarzyna Piwocka, Monika Prochorec‐Sobieszek, Michał Mikula, Marta Miączyńska
Software Mentions: 7
Published: almost 5 years ago

10.3390/ijms22179337

Altered DNA Methylation Profiles in SF3B1 Mutated CLL Patients
Cited by: 3
Author(s): Alicja Pacholewska, Christina Grimm, Carmen D. Herling, Matthias Lienhard, Anja Königs, Bernd Timmermann, Janine Altmüller, Oliver Mücke, Hans Christian Reinhardt, Christoph Plass, Ralf Herwig, Michael Hallek, Michal R. Schweiger
Software Mentions: 6
Published: about 3 years ago

10.1038/s41598-018-37106-4

Carnivoran hunting style and phylogeny reflected in bony labyrinth morphometry
Cited by: 14
Author(s): Julia A. Schwab, Jürgen Kriwet, Gerhard Weber, Cathrin Pfaff
Software Mentions: 6
Published: almost 6 years ago

10.1186/1475-2840-11-41

Uncoupling protein 2 gene polymorphisms are associated with obesity
Cited by: 45
Author(s): Sukma Oktavianthi, Hidayat Trimarsanto, Clarissa A. Febinia, Ketut Suastika, Made Ratna Saraswati, Pande Dwipayana, Wibowo Arindrarto, Herawati Sudoyo, Safarina G. Malik
Software Mentions: 5
Published: over 12 years ago

10.3390/microorganisms9010006

Diversity and Colonization Strategies of Endolithic Cyanobacteria in the Cold Mountain Desert of Pamir
Cited by: 10
Author(s): Nataliia Khomutovska, Asunción de los Rı́os, Iwona Jasser
Software Mentions: 5
Published: almost 4 years ago

10.3390/ani8100182

Investigating Home Range, Movement Pattern, and Habitat Selection of Bar-headed Geese during Breeding Season at Qinghai Lake, China
Cited by: 1
Author(s): Ruobing Zheng, Lacy M. Smith, Diann J. Prosser, John Y. Takekawa, Scott H. Newman, Jeffery D. Sullivan, Ze Luo, Binbin Yan
Software Mentions: 5
Published: about 6 years ago

10.1002/dta.2895

Rapid and robust on‐scene detection of cocaine in street samples using a handheld near‐infrared spectrometer and machine learning algorithms
Cited by: 30
Author(s): Ruben F. Kranenburg, Joshka Verduin, Yannick Weesepoel, Martin Alewijn, Marcel Heerschop, G. C. M. Koomen, Peter H. J. Keizers, Frank Bakker, Fionn Wallace, Annette van Esch, Annemieke Hulsbergen, Arian C. van Asten
Software Mentions: 4
Published: over 4 years ago

10.1098/rspb.2017.2307

Low intensity blood parasite infections do not reduce the aerobic performance of migratory birds
Cited by: 28
Author(s): Steffen Hahn, Silke Bauer, Dimitar Dimitrov, Tamara Emmenegger, Karina Ivanova, Pavel Zehtindjiev, William A. Buttemer
Software Mentions: 4
Published: almost 7 years ago

10.15252/msb.20188323

Genome‐wide prediction of synthetic rescue mediators of resistance to targeted and immunotherapy
Cited by: 22
Author(s): Avinash Sahu, Joo S. Lee, Zhiyong Wang, Gao Zhang, Ramiro Iglesias-Bartolomé, Tian Tian, Zhi Wei, Benchun Miao, Nishanth Ulhas Nair, Olga Ponomarova, Adam Friedman, Arnaud Amzallag, Tabea Moll, Gyulnara G. Kasumova, Patricia Greninger, Regina K. Egan, Leah J. Damon, Dennie T. Frederick, Livnat Jerby‐Arnon, Allon Wagner, Kuoyuan Cheng, Seung Gu Park, Welles Robinson, Kevin Gardner, Genevieve M. Boland, Sridhar Hannenhalli, Meenhard Herlyn, Cyril H. Benes, Keith T. Flaherty, Ji Luo, J. Silvio Gutkind, Eytan Ruppin
Software Mentions: 4
Published: over 5 years ago

10.15252/emmm.201607308

Attenuated <scp>PDGF</scp> signaling drives alveolar and microvascular defects in neonatal chronic lung disease
Cited by: 29
Author(s): Prajakta Oak, Tina Pritzke, Isabella Thiel, Markus Koschlig, Daphne S. Mous, Anita Windhorst, Noopur Jain, Oliver Eickelberg, Kai Foerster, Andreas Schulze, Wolfgang Goepel, Tobias Reicherzer, Harald Ehrhardt, Robbert J. Rottier, Peter Ahnert, Ludwig Gortner, Tushar J. Desai, Anne Hilgendorff
Software Mentions: 3
Published: about 7 years ago

10.3389/fcell.2021.615761

Genome-Wide Analysis of Differentially Expressed miRNAs and Their Associated Regulatory Networks in Lenses Deficient for the Congenital Cataract-Linked Tudor Domain Containing Protein TDRD7
Cited by: 10
Author(s): Deepti Anand, Salma Al Saai, Sanjaya Shrestha, Carrie E. Barnum, Shinichiro Chuma, Salil A. Lachke
Software Mentions: 2
Published: almost 4 years ago

10.3390/e23070815

Extended Variational Message Passing for Automated Approximate Bayesian Inference
Cited by: 5
Author(s): Semih Akbayrak, Ivan Bocharov, Bert de Vries
Software Mentions: 2
Published: over 3 years ago

10.1002/evl3.210

The repeatable opportunity for selection differs between pre- and postcopulatory fitness components
Cited by: 9
Author(s): Lucas Marie‐Orleach, Nikolas Vellnow, Lukas Schärer
Software Mentions: 2
Published: almost 4 years ago

10.1093/ve/vev011

Elucidating the phylodynamics of endemic rabies virus in eastern Africa using whole-genome sequencing
Cited by: 54
Author(s): Kirstyn Brunker, Denise A. Marston, Daniel L. Horton, Sarah Cleaveland, Anthony R. Fooks, Rudovick Kazwala, Chanasa Ngeleja, Tiziana Lembo, Maganga Sambo, Zacharia Mtema, Lwitiko Sikana, Gavin S. Wilkie, Roman Biek, Katie Hampson
Software Mentions: 2
Published: almost 10 years ago

10.1038/s41598-019-45480-w

Motor modules account for active perception of force
Cited by: 3
Author(s): Simone Toma, Marco Santello
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.655552

Sirt6 Regulates the Development of Medullary Thymic Epithelial Cells and Contributes to the Establishment of Central Immune Tolerance
Cited by: 7
Author(s): Qian Zhang, Zhanfeng Liang, Jiayu Zhang, Lei Tong, Xue Dong, H. Su, Yifang Chen, Zhaoqi Zhang, Liang Tan, Yong Zhao
Software Mentions: 1
Published: over 3 years ago

10.3389/fpsyg.2021.664638

Social Capital Theory, Social Exchange Theory, Social Cognitive Theory, Financial Literacy, and the Role of Knowledge Sharing as a Moderator in Enhancing Financial Well-Being: From Bibliometric Analysis to a Conceptual Framework Model
Cited by: 21
Author(s): Asha Thomas, Vikas Gupta
Software Mentions: 1
Published: over 3 years ago

10.1534/g3.120.401511

The Impact of DNA Methylation Dynamics on the Mutation Rate During Human Germline Development
Cited by: 19
Author(s): Yangjie Zhou, Funan He, Weilin Pu, Xun Gu, Jiucun Wang, Zhixi Su
Software Mentions: 1
Published: about 4 years ago

10.3390/genes11040461

An Integrative Phenotype–Genotype Approach Using Phenotypic Characteristics from the UAE National Diabetes Study Identifies HSD17B12 as a Candidate Gene for Obesity and Type 2 Diabetes
Cited by: 15
Author(s): Mahmood Y. Hachim, Hayat Aljaibeji, Rifat Hamoudi, Ibrahim Y. Hachim, Noha Mousaad Elemam, Abdul Khader Mohammed, Albert Salehi, Jalal Taneera, Nabil Sulaiman
Software Mentions: 1
Published: over 4 years ago

10.1371/journal.pone.0219366

Supplementation of diet with non-digestible oligosaccharides alters the intestinal microbiota, but not arthritis development, in IL-1 receptor antagonist deficient mice
Cited by: 7
Author(s): Rebecca Rogier, Thomas H. A. Ederveen, Harm Wopereis, Anita Hartog, Jos Boekhorst, Sacha A. F. T. van Hijum, Jan Knol, Johan Garssen, Birgitte Walgreen, Monique M. Helsen, P.M. van der Kraan, P.L.E.M. van Lent, Fons A. J. van de Loo, Shahla Abdollahi‐Roodsaz, Marije I. Koenders
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0219367

The change in age distribution of CAP population in Korea with an estimation of clinical implications of increasing age threshold of current CURB65 and CRB65 scoring system
Cited by: 1
Author(s): Byung-Hyun Kim, Joonghee Kim, You Hwan Jo, Jae Hyuk Lee, Ji Eun Hwang
Software Mentions: 1
Published: over 5 years ago

10.1371/journal.pone.0168607

iFORM: Incorporating Find Occurrence of Regulatory Motifs
Cited by: 2
Author(s): Chao Ren, Hebing Chen, Bite Yang, Feng Liu, Zhangyi Ouyang, Xiaochen Bo, Wenjie Shu
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-020-6745-3

Genome-wide analysis on the maize genome reveals weak selection on synonymous mutations
Cited by: 11
Author(s): Duan Chu, Lai Wei
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-021-85966-0

PD-1 and PD-L1 expression on TILs in peritoneal metastases compared to ovarian tumor tissues and its associations with clinical outcome
Cited by: 12
Author(s): Christine Bekos, Dietmar Pils, Sabine Dekan, Gerda Hofstetter, Peter Horak, Alexander Reinthaller, Stephan Polterauer, Richard Schwameis, Stefanie Aust
Software Mentions: 1
Published: over 3 years ago

10.1038/s41598-021-92858-w

Optimizing setup of scan number in FTIR spectroscopy using the moment distance index and PLS regression: application to soil spectroscopy
Cited by: 9
Author(s): Issam Barra, Lotfi Khiari, Stephan M. Haefele, Ruben Sakrabani, Fassil Kebede
Software Mentions: 1
Published: over 3 years ago

10.2196/26448

Automation of Article Selection Process in Systematic Reviews Through Artificial Neural Network Modeling and Machine Learning: Protocol for an Article Selection Model
Cited by: 1
Author(s): Gabriel Ferraz Ferreira, Marcos G. Quiles, Tiago S. Nazaré, Solange Oliveira Rezende, Marcelo Demarzo
Software Mentions: 1
Published: over 3 years ago