Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: cran: pegas

https://packages.ecosyste.ms/registries/cran.r-project.org/packages/pegas

Population and Evolutionary Genetics Analysis System
30 versions
Latest release: over 1 year ago
19 dependent packages
4,518 downloads last month

Papers Mentioning pegas 117

10.1371/journal.pone.0243927
A workflow with R: Phylogenetic analyses and visualizations using mitochondrial cytochrome b gene sequences
Cited by: 13
Author(s): Emine Toparslan, Kemal Karabağ, Uğur Bilge
Software Mentions: 24
Published: almost 4 years ago
10.1038/s41598-020-75345-6
High gene flow maintains genetic diversity following selection for high EPSPS copy number in the weed kochia (Amaranthaceae)
Cited by: 9
Author(s): Sara L. Martin, Leshawn Benedict, Wei Wei, Connie A. Sauder, Hugh J. Beckie, Linda M. Hall
Software Mentions: 17
Published: about 4 years ago
10.1093/gbe/evab127
Genome-Inferred Correspondence between Phylogeny and Metabolic Traits in the Wild <i>Drosophila</i> Gut Microbiome
Cited by: 4
Author(s): Jeffery S. McMullen, Eduardo Bueno, Frances Blow, Angela E. Douglas
Software Mentions: 16
Published: over 3 years ago
10.1002/ece3.7625
Genetic differentiation and signatures of local adaptation revealed by RADseq for a highly dispersive mud crab <i>Scylla olivacea</i> (Herbst, 1796) in the Sulu Sea
Cited by: 4
Author(s): Michael John Mendiola, Rachel Ravago-Gotanco
Software Mentions: 12
Published: over 3 years ago
10.1371/journal.pone.0229330
StructuRly: A novel shiny app to produce comprehensive, detailed and interactive plots for population genetic analysis
Cited by: 22
Author(s): Nicola G. Criscuolo, Claudia Angelini
Software Mentions: 12
Published: almost 5 years ago
10.1002/ece3.7515
Forest <i>Saccharomyces paradoxus</i> are robust to seasonal biotic and abiotic changes
Cited by: 4
Author(s): Primrose J. Boynton, Dominika Wloch‐Salamon, Doreen Landermann, Eva H. Stukenbrock
Software Mentions: 11
Published: over 3 years ago
10.3390/plants8120547
New Insights on Lilium Phylogeny Based on a Comparative Phylogenomic Study Using Complete Plastome Sequences
Cited by: 12
Author(s): Hyoung Tae Kim, Ki-Byung Lim, Jung Sung Kim
Software Mentions: 11
Published: almost 5 years ago
10.1093/gigascience/giaa060
SnpHub: an easy-to-set-up web server framework for exploring large-scale genomic variation data in the post-genomic era with applications in wheat
Cited by: 35
Author(s): Wenxi Wang, Zihao Wang, Xintong Li, Zhongfu Ni, Zhaorong Hu, Mingming Xin, Huiru Peng, Yingyin Yao, Qixin Sun, Weilong Guo
Software Mentions: 10
Published: over 4 years ago
10.1038/s41437-019-0204-4
Extreme mito-nuclear discordance in a peninsular lizard: the role of drift, selection, and climate
Cited by: 24
Author(s): Pedro Henrique Bernardo, Santiago Sánchez‐Ramírez, Santiago J. Sánchez-Pacheco, Sergio Ticul Álvarez-Castañeda, Eduardo Felipe Aguilera-Miller, Fausto R. Méndez–de la Cruz, Robert W. Murphy
Software Mentions: 10
Published: over 5 years ago
10.1371/journal.pone.0236084
Mating system is correlated with immunogenetic diversity in sympatric species of Peromyscine mice
Cited by: 0
Author(s): Jesyka Meléndez‐Rosa, Ke Bi, Eileen A. Lacey
Software Mentions: 9
Published: over 4 years ago
10.1002/ece3.5792
Population genetics of<i>Anopheles koliensis</i>through Papua New Guinea: New cryptic species and landscape topography effects on genetic connectivity
Cited by: 2
Author(s): Luke Ambrose, Jeffrey O. Hanson, Cynthia Riginos, Weixin Xu, Sarah L. Fordyce, Robert D. Cooper, Nigel W. Beebe
Software Mentions: 8
Published: about 5 years ago
10.1002/ece3.4894
Contrasting patterns of divergence at the regulatory and sequence level in European <i>Daphnia galeata</i> natural populations
Cited by: 8
Author(s): Suda Parimala Ravindran, Maike Herrmann, Mathilde Cordellier
Software Mentions: 8
Published: almost 6 years ago
10.1002/ece3.5033
Evidence for contemporary and historical gene flow between guppy populations in different watersheds, with a test for associations with adaptive traits
Cited by: 18
Author(s): Léa Blondel, Lyndsey Baillie, Jessica Quinton, Jahson Berhane Alemu, Ian G. Paterson, Andrew P. Hendry, Paul Bentzen
Software Mentions: 8
Published: over 5 years ago
10.7717/peerj.12063
Dongsha Atoll is an important stepping-stone that promotes regional genetic connectivity in the South China Sea
Cited by: 3
Author(s): Shang-Yin Vanson Liu, Jacob Green, Dana Briggs, Ruth Hastings, Ylva Jondelius, Skylar Kensinger, Hannah Leever, Sophia Santos, Trevor Throne, Chi Cheng, Hawis Madduppa, Robert J. Toonen, Michelle R. Gaither, Eric D. Crandall
Software Mentions: 8
Published: about 3 years ago
10.1186/s12863-020-00921-8
Genome wide analysis reveals genetic divergence between Goldsinny wrasse populations
Cited by: 5
Author(s): Eva Jansson, François Besnier, Ketil Malde, Carl André, Geir Dahle, Kevin A. Glover
Software Mentions: 8
Published: about 4 years ago
10.1186/s12711-019-0454-x
Sibship assignment to the founders of a Bangladeshi Catla catla breeding population
Cited by: 8
Author(s): Matthew Hamilton, Wagdy Mekkawy, John A. H. Benzie
Software Mentions: 8
Published: over 5 years ago
10.1371/journal.pone.0185487
The fine-scale genetic structure and evolution of the Japanese population
Cited by: 26
Author(s): Fumihiko Takeuchi, Tomohiro Katsuya, Ryosuke Kimura, Toru Nabika, Minoru Isomura, Takayoshi Ohkubo, Yasuharu Tabara, Ken Yamamoto, Mitsuhiro Yokota, Xuanyao Liu, Woei-Yuh Saw, Dolikun Mamatyusupu, Wenjun Yang, Shuhua Xu, Yik-Ying Teo, Norihiro Kato
Software Mentions: 8
Published: about 7 years ago
10.1038/s41598-019-38532-8
Taraxacum kok-saghyz (rubber dandelion) genomic microsatellite loci reveal modest genetic diversity and cross-amplify broadly to related species
Cited by: 13
Author(s): Marcin Nowicki, Yichen Zhao, Sarah L. Boggess, Helge Fluess, Miriam Payá‐Milans, Margaret Staton, Logan C. Houston, Ðenita Hadziabdic, Robert N. Trigiano
Software Mentions: 7
Published: almost 6 years ago
10.1186/s13071-019-3860-6
Two-year longitudinal survey reveals high genetic diversity of Schistosoma mansoni with adult worms surviving praziquantel treatment at the start of mass drug administration in Uganda
Cited by: 18
Author(s): Christina L. Faust, Marco Crotti, Moses Arinaitwe, David Oguttu, Aidah Wamboko, Moses Adriko, Elizabeth K. Adekanle, Narcis B. Kabatereine, Edridah M. Tukahebwa, Alice Norton, Charlotte Gower, Joanne P. Webster, Poppy H. L. Lamberton
Software Mentions: 7
Published: almost 5 years ago
10.1186/1471-2148-14-61
Introgressive hybridization and latitudinal admixture clines in North Atlantic eels
Cited by: 15
Author(s): Sébastien Wielgoss, Aude Gilabert, Axel Meyer, Thierry Wirth
Software Mentions: 7
Published: over 10 years ago
10.1371/journal.pone.0094246
Winemaking and Bioprocesses Strongly Shaped the Genetic Diversity of the Ubiquitous Yeast Torulaspora delbrueckii
Cited by: 60
Author(s): Warren Albertin, Laura Chasseriaud, Guillaume Comte, Aurélie Panfili, Adline Delcamp, Franck Salin, Philippe Marullo, Marina Bely
Software Mentions: 7
Published: over 10 years ago
10.1371/journal.pone.0196488
Symbols in motion: Flexible cultural boundaries and the fast spread of the Neolithic in the western Mediterranean
Cited by: 31
Author(s): Solange Rigaud, Claire Manen, Íñigo García-Martínez de Lagrán
Software Mentions: 7
Published: over 6 years ago
10.3390/genes12050637
Insight into the Genetic Population Structure of Wild Red Foxes in Poland Reveals Low Risk of Genetic Introgression from Escaped Farm Red Foxes
Cited by: 2
Author(s): Heliodor Wierzbicki, Magdalena Zatoń‐Dobrowolska, Anna Mucha, Magdalena Moska
Software Mentions: 7
Published: over 3 years ago
10.1186/s12864-018-4689-7
Gene copy number variation in natural populations of Plasmodium falciparum in Eastern Africa
Cited by: 12
Author(s): Joan Simam, Martin K. Rono, Joyce M. Ngoi, Mary Nyonda, Sachel Mok, Kevin Marsh, Zbynek Bozdech, Margaret J. Mackinnon
Software Mentions: 7
Published: over 6 years ago
10.3389/fmicb.2021.703792
Exploring the Microdiversity Within Marine Bacterial Taxa: Toward an Integrated Biogeography in the Southern Ocean
Cited by: 5
Author(s): Guillaume Schwob, Nicolás I. Segovia, Claudio A. González‐Wevar, Léa Cabrol, Julieta Orlando, Élie Poulin
Software Mentions: 7
Published: over 3 years ago
10.1038/s41598-019-39669-2
Parallel colonization of subalpine habitats in the central European mountains by Primula elatior
Cited by: 13
Author(s): Veronika Konečná, Michael Nowak, Filip Kolář
Software Mentions: 7
Published: over 5 years ago
10.1186/s12870-021-03142-y
Maximizing genetic representation in seed collections from populations of self and cross-pollinated banana wild relatives
Cited by: 5
Author(s): Simon Kallow, Bart Panis, Dang Toan Vu, Tuong Dang Vu, J. Paofa, Arne Mertens, Rony Swennen, Steven Janssens
Software Mentions: 7
Published: about 3 years ago
10.1111/eva.12849
Single nucleotide polymorphisms reveal a genetic cline across the north‐east Atlantic and enable powerful population assignment in the European lobster
Cited by: 33
Author(s): Tom L. Jenkins, Charlie D. Ellis, Alexandros Triantafyllidis, Jamie R. Stevens
Software Mentions: 7
Published: over 5 years ago
10.1111/eva.12755
Into the weeds: Matching importation history to genetic consequences and pathways in two widely used biological control agents
Cited by: 16
Author(s): Julie V. Hopper, Kent F. McCue, Paul D. Pratt, Pierre Duchesne, Edwin D. Grosholz, Ruth A. Hufbauer
Software Mentions: 6
Published: almost 6 years ago
10.1111/eva.13037
Strong population differentiation in lingcod (<i>Ophiodon elongatus</i>) is driven by a small portion of the genome
Cited by: 20
Author(s): Gary C. Longo, Laurel S. Lam, Bonnie Basnett, Jameal F. Samhouri, Scott L. Hamilton, Kelly S. Andrews, Greg D. Williams, Giles Goetz, Michelle McClure, Krista M. Nichols
Software Mentions: 6
Published: over 4 years ago
10.1002/ece3.5516
Extensive genetic differentiation between recently evolved sympatric Arctic charr morphs
Cited by: 18
Author(s): Jóhannes Guðbrandsson, Kalina H. Kapralova, Sigríður Rut Franzdóttir, Þóra Margrét Bergsveinsdóttir, Völundur Hafstað, Zophonı́as O. Jónsson, Sigurður S. Snorrason, Arnar Pálsson
Software Mentions: 6
Published: about 5 years ago
10.1371/journal.pntd.0008962
Population genomics of Plasmodium vivax in Panama to assess the risk of case importation on malaria elimination
Cited by: 14
Author(s): Lucas E. Buyon, Ana María Santamaría, Angela M. Early, Mario Quijada, Itza Barahona, José Lasso, Mario Ávila, Sarah K. Volkman, Matthias Marti, Daniel E. Neafsey, Nicanor Obaldía
Software Mentions: 6
Published: almost 4 years ago
10.1111/eva.12676
Genomic signatures of environmental selection despite near‐panmixia in summer flounder
Cited by: 32
Author(s): Jennifer A. Hoey, Malin L. Pinsky
Software Mentions: 6
Published: over 6 years ago
10.1002/ece3.7453
High‐throughput sequencing on preservative ethanol is effective at jointly examining infraspecific and taxonomic diversity, although bioinformatics pipelines do not perform equally
Cited by: 7
Author(s): Marjorie Couton, Aurélien Baud, Claire Daguin‐Thiébaut, Erwan Corre, Thierry Comtet, Frédérique Viard
Software Mentions: 6
Published: over 3 years ago
10.1038/s41598-020-67209-w
Laboratory culture of the California Sea Firefly Vargula tsujii (Ostracoda: Cypridinidae): Developing a model system for the evolution of marine bioluminescence
Cited by: 5
Author(s): Jessica A. Goodheart, Geetanjali Minsky, Mira N. Brynjegard-Bialik, Michael S. Drummond, Jacqueline Muñoz, Timothy R. Fallon, Darrin T. Schultz, Jing‐Ke Weng, Elizabeth Torres, Todd H. Oakley
Software Mentions: 5
Published: over 4 years ago
10.1111/jbi.12326
<i>Ficus insipida</i> subsp. <i>insipida</i> (Moraceae) reveals the role of ecology in the phylogeography of widespread Neotropical rain forest tree species
Cited by: 23
Author(s): Eurídice N. Honorio Coronado, Kyle G. Dexter, Monica F. Poelchau, Peter M. Hollingsworth, Oliver L. Phillips, R. Toby Pennington
Software Mentions: 5
Published: over 10 years ago
10.1002/ece3.4333
Island biogeography and ecological modeling of the amblypygid<i>Phrynus marginemaculatus</i>in the Florida Keys archipelago
Cited by: 4
Author(s): Kenneth James Chapin, Daniel E. Winkler, Patrick Wiencek, Ingi Agnarsson
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pntd.0007876
Microsatellite analysis reveals connectivity among geographically distant transmission zones of Plasmodium vivax in the Peruvian Amazon: A critical barrier to regional malaria elimination
Cited by: 11
Author(s): Paulo Manrique, Julio Miranda-Alban, Jhonatan Alarcon-Baldeon, Roberson Ramirez, Gabriel Carrasco-Escobar, Henry Herrera, Mitchel Guzmán-Guzmán, Ángel Rosas Aguirre, Alejandro Llanos‐Cuentas, Joseph M. Vinetz, Ananías A. Escalante, Dionicia Gamboa
Software Mentions: 5
Published: about 5 years ago
10.1371/journal.pone.0166969
Hybrid Origins of Citrus Varieties Inferred from DNA Marker Analysis of Nuclear and Organelle Genomes
Cited by: 72
Author(s): Tokurou Shimizu, Akira Kitajima, Kenichi Nonaka, Terutaka Yoshioka, Satoshi Ohta, Shingo Goto, Atsushi Toyoda, Asao Fujiyama, Takako Mochizuki, Hideki Nagasaki, Eli Kaminuma, Yasukazu Nakamura
Software Mentions: 5
Published: almost 8 years ago
10.1002/ece3.5538
Old divergence and restricted gene flow between torrent duck ( Merganetta armata ) subspecies in the Central and Southern Andes
Cited by: 2
Author(s): Luis Alza, Philip Lavretsky, Jeffrey L. Peters, Gerardo Cerón, Matthew J. Smith, Cecilia Kopuchian, Andrea A. Astié, Kevin G. McCracken
Software Mentions: 5
Published: over 5 years ago
10.3389/fmicb.2020.00360
Time-Course RNAseq Reveals Exserohilum turcicum Effectors and Pathogenicity Determinants
Cited by: 16
Author(s): Maria Petronella Human, David Kenneth Berger, Bridget Genevieve Crampton
Software Mentions: 5
Published: over 4 years ago
10.3389/fgene.2019.00597
Single Nucleotide Polymorphisms (SNPs) Reveal Sibship Among Founders of a Bangladeshi Rohu (Labeo rohita) Breeding Population
Cited by: 10
Author(s): Matthew Hamilton, Wagdy Mekkawy, Andrzej Kilian, John A. H. Benzie
Software Mentions: 5
Published: over 5 years ago
10.1371/journal.pone.0231809
Genetic and demographic vulnerability of adder populations: Results of a genetic study in mainland Britain
Cited by: 3
Author(s): Sarah E. Ball, Nigel Hand, Faye Willman, Chris Durrant, Tobias Uller, Katja Claus, Joachim Mergeay, Dirk Bauwens, Trenton W. J. Garner
Software Mentions: 5
Published: over 4 years ago
10.1111/eva.12699
Weed evolution: Genetic differentiation among wild, weedy, and crop radish
Cited by: 16
Author(s): Amanda Charbonneau, David C. Tack, Allison Lale, J. E. Goldston, Mackenzie Caple, Emma Conner, Oz Barazani, Jotham Ziffer-Berger, Ian Dworkin, Jeffrey K. Conner
Software Mentions: 5
Published: about 6 years ago
10.1038/sdata.2019.7
The effect of 16S rRNA region choice on bacterial community metabarcoding results
Cited by: 222
Author(s): Yu. S. Bukin, Yuri P. Galachyants, И. В. Морозов, S. V. Bukin, А. S. Zakharenko, Т. I. Zemskaya
Software Mentions: 5
Published: almost 6 years ago
10.1186/s42238-020-00036-y
A single nucleotide polymorphism assay sheds light on the extent and distribution of genetic diversity, population structure and functional basis of key traits in cultivated north American cannabis
Cited by: 12
Author(s): Philippe Henry, Surender Khatodia, Karan Kapoor, Britni Gonzales, Alexis Middleton, Kevin C. Hong, Aaron Hilyard, Steve L. Johnson, Davis Allen, Zachary Chester, Dan Jin, José Carlos Rodriguez Jule, Iain F. Wilson, Manu P. Gangola, Jason Broome, Deron Caplan, Dinesh Adhikary, Michael K. Deyholos, Michael Morgan, Oliver W. Hall, Brent J. Guppy, Cindy S. Orser
Software Mentions: 4
Published: about 4 years ago
10.1038/s41598-021-81788-2
Relevance of ddRADseq method for species and population delimitation of closely related and widely distributed wolf spiders (Araneae, Lycosidae)
Cited by: 5
Author(s): Vladislav Ivanov, Yuri M. Marusik, Julien Pétillon, Marko Mutanen
Software Mentions: 4
Published: almost 4 years ago
10.1038/srep37712
Inter-annual maintenance of the fine-scale genetic structure in a biennial plant
Cited by: 9
Author(s): Javier Valverde, José M. Gómez, Cristina García, Timothy F. Sharbel, M.N. Jiménez, Francisco Perfectti
Software Mentions: 4
Published: almost 8 years ago
10.12688/wellcomeopenres.16320.2
Haplotype heterogeneity and low linkage disequilibrium reduce reliable prediction of genotypes for the ‑α3.7I form of α-thalassaemia using genome-wide microarray data
Cited by: 2
Author(s): Carolyne Ndila, Vysaul Nyirongo, Alexander Macharia, Anna E. Jeffreys, Kate Rowlands, Christina Hubbart, George B.J. Busby, Gavin Band, Rosalind M. Harding, Kirk A. Rockett, Thomas N. Williams
Software Mentions: 4
Published: about 3 years ago
10.1002/ece3.2134
Divergence and isolation of cryptic sympatric taxa within the annual legume <i>Amphicarpaea bracteata</i>
Cited by: 8
Author(s): Rebecca Y. Kartzinel, Daniel Spalink, Donald M. Waller, Thomas J. Givnish
Software Mentions: 4
Published: over 8 years ago
10.1002/ece3.5239
Multiple introductions and population structure during the rapid expansion of the invasive Sahara mustard (<i>Brassica tournefortii</i>)
Cited by: 12
Author(s): Daniel E. Winkler, Kenneth James Chapin, F. Ochsenbein, J. David Garmon, Brandon S. Gaut, Travis E. Huxman
Software Mentions: 4
Published: over 5 years ago
10.1002/ece3.4944
Conservation of genetic diversity hotspots of the high‐valued relic yellowhorn ( Xanthoceras sorbifolium ) considering climate change predictions
Cited by: 1
Author(s): Renbin Zhu, Qing Wang, Wei Guan, Yanjia Mao, Bin Tian, Jimin Cheng, Yousry A. El‐Kassaby
Software Mentions: 4
Published: over 5 years ago
10.1038/s41598-018-24120-9
Testing the impact of effective population size on speciation rates – a negative correlation or lack thereof in lichenized fungi
Cited by: 5
Author(s): Jen‐Pan Huang, Steven D. Leavitt, H. Thorsten Lumbsch
Software Mentions: 4
Published: over 6 years ago
10.1002/ece3.5649
Molecular biogeography and host relations of a parasitoid fly
Cited by: 8
Author(s): David A. Gray, Henry D. Kunerth, Marlene Zuk, William H. Cade, Susan L. Balenger
Software Mentions: 4
Published: about 5 years ago
10.1534/g3.120.401053
Mutations in a Novel Cadherin Gene Associated with Bt Resistance in <i>Helicoverpa zea</i>
Cited by: 14
Author(s): Megan L. Fritz, Schyler O. Nunziata, Ruifeng Guo, Bruce E. Tabashnik, Yves Carrière
Software Mentions: 4
Published: over 4 years ago
10.1002/ece3.6404
“A cleaner break”: Genetic divergence between geographic groups and sympatric phenotypes revealed in ballan wrasse (<i>Labrus bergylta</i>)
Cited by: 9
Author(s): Gaute Wilhelmsen Seljestad, María Quintela, Ellika Faust, Kim Tallaksen Halvorsen, François Besnier, Eva Jansson, Geir Dahle, Halvor Knutsen, Carl André, Arild Folkvord, Kevin A. Glover
Software Mentions: 4
Published: over 4 years ago
10.3389/fpls.2021.730258
One Step Away From Extinction: A Population Genomic Analysis of A Narrow Endemic, Tropical Plant Species
Cited by: 4
Author(s): Thais M. Teixeira, Alison G. Nazareno
Software Mentions: 4
Published: about 3 years ago
10.1002/ece3.5464
Cuticular hydrocarbons as potential mediators of cryptic species divergence in a mutualistic ant association
Cited by: 18
Author(s): Juliane Hartke, Philipp P. Sprenger, Jacqueline Sahm, Helena Winterberg, Jérôme Orivel, Hannes Baur, Till Beuerle, Thomas Schmitt, Barbara Feldmeyer, Florian Menzel
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0097508
Population Structure and Phylogeography in Nassau Grouper (Epinephelus striatus), a Mass-Aggregating Marine Fish
Cited by: 36
Author(s): Andrew Jackson, Brice X. Semmens, Yvonne Sadovy de Mitcheson, Richard S. Nemeth, Scott A. Heppell, Phillippe G. Bush, Alfonso Aguilar‐Perera, John A. B. Claydon, Marta C. Calosso, Kathleen Sullivan Sealey, Michelle T. Schärer, Giacomo Bernardi
Software Mentions: 4
Published: over 10 years ago
10.1371/journal.pone.0163738
Historical Environment Is Reflected in Modern Population Genetics and Biogeography of an Island Endemic Lizard (Xantusia riversiana reticulata)
Cited by: 3
Author(s): Iris Holmes, William J. Mautz, Alison R. Davis Rabosky
Software Mentions: 3
Published: about 8 years ago
10.5194/aab-64-91-2021
Genetic diversity and population structure in divergent German cattle selection lines on the basis of milk protein polymorphisms
Cited by: 2
Author(s): Lisa G Hohmann, Christina Weimann, Carsten Scheper, G. Erhardt, Sven König
Software Mentions: 3
Published: over 3 years ago
10.1186/s12863-021-00958-3
Morphological characterization and genetic diversity analysis of Tunisian durum wheat (Triticum turgidum var. durum) accessions
Cited by: 11
Author(s): Maroua Ouaja, Bochra Amina Bahri, Lamia Aouini, Sahbi Ferjaoui, Maher Medini, Thierry C. Marcel, Sonia Hamza
Software Mentions: 3
Published: almost 4 years ago
10.1186/1471-2350-12-55
Geographic differences in allele frequencies of susceptibility SNPs for cardiovascular disease
Cited by: 43
Author(s): Keyue Ding, Iftikhar J. Kullo
Software Mentions: 3
Published: over 13 years ago
10.1093/molbev/msaa257
Divergence and Remarkable Diversity of the Y Chromosome in Guppies
Cited by: 26
Author(s): Pedro Almeida, Benjamin A. Sandkam, Jeffrey J. Morris, Iulia Darolti, Felix Breden, Judith E. Mank
Software Mentions: 3
Published: about 4 years ago
10.1186/s13071-018-2760-5
Along for the ride or missing it altogether: exploring the host specificity and diversity of haemogregarines in the Canary Islands
Cited by: 12
Author(s): Beatriz Tomé, Ana Pereira, Fátima Jorge, Miguel Á. Carretero, D. James Harris, Ana Perera
Software Mentions: 3
Published: over 6 years ago
10.1371/journal.pgen.1008313
RPW8/HR repeats control NLR activation in Arabidopsis thaliana
Cited by: 51
Author(s): Cristina A. Barragan, Rui Wu, Sang‐Tae Kim, Wanyan Xi, Anette Habring, Jörg Hagmann, Anna-Lena Van de Weyer, Maricris Zaidem, William Wing Ho Ho, George Wang, Ilja Bezrukov, Detlef Weigel, Eunyoung Chae
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0203737
Psidium guajava in the Galapagos Islands: Population genetics and history of an invasive species
Cited by: 27
Author(s): Diego Urquía, Bernardo Gutierrez, Gabriela Pozo, Marı́a J. Pozo, Analía Espín, María de Lourdes Torres
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0053537
Extent of Linkage Disequilibrium in the Domestic Cat, Felis silvestris catus, and Its Breeds
Cited by: 53
Author(s): Hasan Alhaddad, Razib Khan, Robert A. Grahn, Barbara Gandolfi, James C. Mullikin, Shelley A. Cole, TJ Gruffydd-Jones, Jens Häggström, Hannes Lohi, M. Longeri, Leslie A. Lyons
Software Mentions: 3
Published: almost 12 years ago
10.1371/journal.pone.0171088
Determination of Genetic Structure and Signatures of Selection in Three Strains of Tanzania Shorthorn Zebu, Boran and Friesian Cattle by Genome-Wide SNP Analyses
Cited by: 16
Author(s): George Msalya, Eui-Soo Kim, Emmanuel Levillal Katamboi Laisser, Maulilio J. Kipanyula, Esron D. Karimuribo, L.J.M. Kusiluka, Sebastian Wilson Chenyambuga, Max F. Rothschild
Software Mentions: 3
Published: almost 8 years ago
10.1371/journal.pone.0251878
Haplotype network branch diversity, a new metric combining genetic and topological diversity to compare the complexity of haplotype networks
Cited by: 2
Author(s): Eric Garcia, Daniel B Wright, Remy Gatins, May B. Roberts, Hudson T. Pinheiro, Eva Salas, Jei-Ying Chen, Jacob R. Winnikoff, Giacomo Bernardi
Software Mentions: 3
Published: over 3 years ago
10.1371/journal.pone.0185328
Contribution of both positive selection and relaxation of selective constraints to degeneration of flyability during geese domestication
Cited by: 7
Author(s): Ye Wang, Yaodong Hu, Daqian He, Shiyi Chen, Siming Li, Dan Lan, Peng Ren, Zhenping Lin, Yiping Liu
Software Mentions: 3
Published: about 7 years ago
10.1002/ece3.5468
Population genomic structure of the gelatinous zooplankton species <i>Mnemiopsis leidyi</i> in its nonindigenous range in the North Sea
Cited by: 2
Author(s): Christophe Verwimp, Lies Vansteenbrugge, Sofie Derycke, Thomas Kerkhove, Hilde Muylle, Olivier Honnay, Tom Ruttink, Isabel Roldán‐Ruiz, Kris Hostens
Software Mentions: 3
Published: about 5 years ago
10.1002/ece3.2106
Peripheral genetic structure of <i>Helicoverpa zea</i> indicates asymmetrical panmixia
Cited by: 24
Author(s): Mathew Seymour, Omaththage P. Perera, Howard W. Fescemyer, R. E. Jackson, Shelby J. Fleischer, Craig A. Abel
Software Mentions: 3
Published: over 8 years ago
10.1080/22221751.2020.1821582
Genomic epidemiology of emerging ESBL-producing <i>Salmonella</i> Kentucky <i>bla</i><sub>CTX-M-14b</sub> in Europe
Cited by: 24
Author(s): Elena Claudia Coipan, Therese Westrell, Angela H.A.M. van Hoek, Erik Alm, Saara Kotila, Bas Berbers, Sigrid C. J. De Keersmaecker, Pieter‐Jan Ceyssens, Maria Louise Borg, Marie Anne Chattaway, Jacquelyn McCormick, Timothy J. Dallman, Eelco Franz
Software Mentions: 3
Published: almost 5 years ago
10.1038/s41431-020-0693-x
Cultural variation impacts paternal and maternal genetic lineages of the Hmong-Mien and Sino-Tibetan groups from Thailand
Cited by: 15
Author(s): Wibhu Kutanan, Rasmi Shoocongdej, Metawee Srikummool, Alexander Hübner, Thanatip Suttipai, Suparat Srithawong, Jatupol Kampuansai, Mark Stoneking
Software Mentions: 3
Published: over 4 years ago
10.3389/fpls.2018.01677
Transgenerational Effects and Epigenetic Memory in the Clonal Plant Trifolium repens
Cited by: 66
Author(s): Alejandra Pilar Rendina González, Veronica Preite, Koen Verhoeven, Vít Latzel
Software Mentions: 3
Published: about 6 years ago
10.3390/genes11070806
Genetic Diversity of C4 Photosynthesis Pathway Genes in Sorghum bicolor (L.)
Cited by: 6
Author(s): Yongfu Tao, Barbara George‐Jaeggli, Marie Bouteillé-Pallas, Shuaishuai Tai, Alan Cruickshank, David R. Jordan, Emma Mace
Software Mentions: 3
Published: over 4 years ago
10.1093/gbe/evw291
Variation in the intensity of selection on codon bias over time causes contrasting patterns of base composition evolution in <i>Drosophila</i>
Cited by: 26
Author(s): Benjamin C. Jackson, José Luis Campos, Penelope R. Haddrill, Brian Charlesworth, Kai Zeng
Software Mentions: 3
Published: almost 8 years ago
10.3390/insects12040327
Gut Bacterial and Fungal Communities of the Wild and Laboratory-Reared Thitarodes Larvae, Host of the Chinese Medicinal Fungus Ophiocordyceps sinensis on Tibetan Plateau
Cited by: 11
Author(s): Guiqing Liu, Xin Zheng, Hailin Long, Zhongchen Rao, Li Cao, Richou Han
Software Mentions: 3
Published: over 3 years ago
10.1038/s41598-017-04737-y
Increased risk of low birth weight in women with placental malaria associated with P. falciparum VAR2CSA clade
Cited by: 29
Author(s): Jaymin C. Patel, Nicholas J. Hathaway, Christian M. Parobek, Kyaw L. Thwai, Mwayiwawo Madanitsa, Carole Khairallah, Linda Kalilani-Phiri, Victor Mwapasa, Achille Massougbodji, Nadine Fiévet, Jeffery A. Bailey, Feiko O. ter Kuile, Philippe Deloron, Stephanie M. Engel, Steve M. Taylor, Jonathan J. Juliano, Nicaise Tuikue Ndam, Steven R. Meshnick
Software Mentions: 3
Published: over 7 years ago
10.1371/journal.pone.0232192
Genetic analysis of Aedes aegypti captured at two international airports serving to the Greater Tokyo Area during 2012–2015
Cited by: 7
Author(s): Kentaro Itokawa, Jiang Hu, Nayu Sukehiro, Yuichi Tsuda, Osamu Komagata, Shinji Kasai, Takashi Tomita, Noboru Minakawa, Kyoko Sawabe
Software Mentions: 2
Published: over 4 years ago
10.3389/fmicb.2015.01569
Hanseniaspora uvarum from Winemaking Environments Show Spatial and Temporal Genetic Clustering
Cited by: 61
Author(s): Warren Albertin, Mathabatha Evodia Setati, Cécile Miot-Sertier, Talitha T. Mostert, Benoît Colonna-Ceccaldi, Joana Coulon, Patrick Girard, Virginie Moine, Myriam Pillet, Franck Salin, Marina Bely, Benoit Divol, Isabelle Masneuf‐Pomarède
Software Mentions: 2
Published: almost 9 years ago
10.1038/s41598-020-67568-4
Selective whole genome amplification of Plasmodium malariae DNA from clinical samples reveals insights into population structure
Cited by: 16
Author(s): Amy Ibrahim, Ernest Diez Benavente, Debbie Nolder, Stéphane Proux, M.K. Higgins, Julian Muwanguzi, Paula González, Hans‐Peter Fuehrer, Cally Roper, François Nosten, Colin J. Sutherland, Taane G. Clark, Susana Campino
Software Mentions: 2
Published: over 4 years ago
10.3389/fpls.2020.607770
Genotyping-by-Sequencing Identifies Historical Breeding Stages of the Recently Domesticated American Cranberry
Cited by: 11
Author(s): Luis Díaz-Garcia, Giovanny Covarrubias‐Pazaran, Jennifer Johnson‐Cicalese, Nicholi Vorsa, Juan Zalapa
Software Mentions: 2
Published: almost 4 years ago
10.1371/journal.pone.0131821
Guanchochroma wildpretii gen. et spec. nov. (Ochrophyta) Provides New Insights into the Diversification and Evolution of the Algal Class Synchromophyceae
Cited by: 4
Author(s): Maria Schmidt, Susanne Horn, Katrin Ehlers, Christian Wilhelm, Reinhard Schnetter
Software Mentions: 2
Published: over 9 years ago
10.3390/genes11101218
Landscape Genomics of a Widely Distributed Snake, Dolichophis caspius (Gmelin, 1789) across Eastern Europe and Western Asia
Cited by: 5
Author(s): Sarita Mahtani-Williams, William C. Fulton, Amélie Desvars-Larrive, Sara Lado, Jean P. Elbers, Bálint Halpern, Dávid Herczeg, Gergely Babocsay, Boris Lauš, Zoltán T. Nagy, Daniel Jablonski, Oleg V. Kukushkin, Pablo Orozco‐terWengel, Judit Vörös, Pamela A. Burger
Software Mentions: 2
Published: about 4 years ago
10.3390/genes12040546
Genetic Variability and Population Structure of Polish Konik Horse Maternal Lines Based on Microsatellite Markers
Cited by: 5
Author(s): Agnieszka Fornal, Kowalska Katarzyna, Tomasz Ząbek, Agata Piestrzyńska-Kajtoch, Adrianna D. Musiał, Katarzyna Ropka‐Molik
Software Mentions: 2
Published: over 3 years ago
10.1371/journal.pone.0177458
Ancient mtDNA diversity reveals specific population development of wild horses in Switzerland after the Last Glacial Maximum
Cited by: 5
Author(s): Julia Elsner, Michael Hofreiter, Jörg Schibler, Angela Schlumbaum
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0209572
Contrasting fine-scale genetic structure of two sympatric clonal plants in an alpine swampy meadow featured by tussocks
Cited by: 3
Author(s): Yu Ning, Guanghua Wu, Hua Ma, Ju-Lan Guo, Manyin Zhang, Wei Li, Yifei Wang, Suo-Lang Duoerji
Software Mentions: 2
Published: almost 6 years ago
10.1186/s12859-021-04048-0
mtDNAcombine: tools to combine sequences from multiple studies
Cited by: 1
Author(s): Miller Ef, Andrea Manica
Software Mentions: 2
Published: over 3 years ago
10.1038/hdy.2014.80
The effects of purifying selection on patterns of genetic differentiation between Drosophila melanogaster populations
Cited by: 31
Author(s): Benjamin C. Jackson, José Luis Campos, Kai Zeng
Software Mentions: 2
Published: about 10 years ago
10.1093/bioinformatics/bts460
GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research—an update
Cited by: 9,066
Author(s): Rod Peakall, Peter E. Smouse
Software Mentions: 2
Published: over 12 years ago
10.1038/s41598-017-01104-9
Limited genomic consequences of hybridization between two African clawed frogs, Xenopus gilli and X. laevis (Anura: Pipidae)
Cited by: 8
Author(s): Benjamin L. S. Furman, Caroline M S Cauret, Graham A. Colby, John Measey, Ben Evans
Software Mentions: 2
Published: over 7 years ago
10.1128/mBio.00971-21
Diversity and Within-Host Evolution of Leishmania donovani from Visceral Leishmaniasis Patients with and without HIV Coinfection in Northern Ethiopia
Cited by: 8
Author(s): Susanne U. Franssen, Yegnasew Takele, Emebet Adem, Mandy Sanders, Ingrid Müller, Pascale Kropf, James A. Cotton
Software Mentions: 2
Published: over 3 years ago
10.1186/s12864-020-07054-3
High conservation combined with high plasticity: genomics and evolution of Borrelia bavariensis
Cited by: 12
Author(s): Noémie S. Becker, Robert E. Rollins, Kateryna Nosenko, Alexander Paulus, Samantha Martin, Stefan Krebs, Ai Takano, Kozue Sato, Sergey Y. Kovalev, Hiroki Kawabata, Volker Fingerle, Gabriele Margos
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-019-56526-4
Genome-Wide SNP discovery and genomic characterization in avocado (Persea americana Mill.)
Cited by: 22
Author(s): Alicia Talavera, Aboozar Soorni, Aureliano Bombarely, Antonio J. Matas, J. I. Hormaza
Software Mentions: 2
Published: almost 5 years ago
10.1002/ece3.4936
Evolution of population structure in an estuarine‐dependent marine fish
Cited by: 24
Author(s): Christopher M. Hollenbeck, David S. Portnoy, John R. Gold
Software Mentions: 2
Published: over 5 years ago
10.1038/s42003-018-0025-7
Triplicate parallel life cycle divergence despite gene flow in periodical cicadas
Cited by: 9
Author(s): Tomochika Fujisawa, Tsunemaro Koyama, Satoshi Kakishima, John R. Cooley, Chris Simon, Jin Yoshimura, Teiji Sota
Software Mentions: 2
Published: over 6 years ago
10.1371/journal.pone.0115493
Vertical and Horizontal Genetic Connectivity in Chromis verater, an Endemic Damselfish Found on Shallow and Mesophotic Reefs in the Hawaiian Archipelago and Adjacent Johnston Atoll
Cited by: 49
Author(s): Kimberly Tenggardjaja, Brian W. Bowen, Giacomo Bernardi
Software Mentions: 2
Published: almost 10 years ago
10.3390/ani10091569
Genetic Diversity and Population Structure of Polish Konik Horse Based on Individuals from All the Male Founder Lines and Microsatellite Markers
Cited by: 9
Author(s): Agnieszka Fornal, Kowalska Katarzyna, Tomasz Ząbek, Agata Piestrzyńska-Kajtoch, Adrianna D. Musiał, Katarzyna Ropka‐Molik
Software Mentions: 1
Published: about 4 years ago