Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0240935

https://doi.org/10.1371/journal.pone.0240935

The sockeye salmon genome, transcriptome, and analyses identifying population defining regions of the genome

Cited by: 24
Author(s): Kris A. Christensen, Eric B. Rondeau, David R. Minkley, Dionne Sakhrani, Carlo A. Biagi, Anne-Marie Flores, Ruth E. Withler, Scott A. Pavey, Terry D. Beacham, Theresa Godin, Eric B. Taylor, Michael A. Russello, Robert H. Devlin, Ben F. Koop
Published: about 4 years ago

Software Mentions 15

bioconductor: ArrayExpress
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
Papers that mentioned: 1,962
cran: adegenet
Exploratory Analysis of Genetic and Genomic Data
Papers that mentioned: 767
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: maps
Draw Geographical Maps
Papers that mentioned: 137
cran: plotly
Create Interactive Web Graphics via 'plotly.js'
Papers that mentioned: 163
cran: reshape2
Flexibly Reshape Data: A Reboot of the Reshape Package
Papers that mentioned: 421
cran: vcfR
Manipulate and Visualize VCF Data
Papers that mentioned: 62
pypi: Analyze
Analyze is a python library that provides comprehensive statistical analysis of a dataframe in 5 lines of code. It creates significant insight for data scientists, analysts and machine learning engineers, enabling quick understanding of a dataset.
Papers that mentioned: 615
pypi: Circos
Circos plots in Python!
Papers that mentioned: 2,252
pypi: custom
Custom self carry
Papers that mentioned: 1,363
pypi: Links
Link-utilities missing from urllib|urllib2
Papers that mentioned: 6
pypi: maps
Maps: flavors of Python dictionaries
Papers that mentioned: 137
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
pypi: plotly
An open-source, interactive data visualization library for Python
Papers that mentioned: 163
pypi: seqtk
seqtk provides various tools for Sequence.
Papers that mentioned: 213