Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0225615

https://doi.org/10.1371/journal.pone.0225615

Cited by: 9
Author(s): Garrett C. McCarthy, Sydney Morgan, Jonathan T. Martiniuk, Brianne L. Newman, Stephanie McCann, Vivien Measday, Daniel M. Durall
Published: over 3 years ago

Software Mentions 14

bioconductor: Biostrings

Efficient manipulation of biological strings
Papers that mentioned: 220

bioconductor: dada2

Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274

bioconductor: ggtree

an R package for visualization of tree and annotation data
Papers that mentioned: 474

bioconductor: ShortRead

FASTQ input and manipulation
Papers that mentioned: 119

cran: adegenet

Exploratory Analysis of Genetic and Genomic Data
Papers that mentioned: 767

cran: ape

Analyses of Phylogenetics and Evolution
Papers that mentioned: 918

cran: car

Companion to Applied Regression
Papers that mentioned: 1,651

cran: PERMANOVA

Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292

cran: poppr

Genetic Analysis of Populations with Mixed Reproduction
Papers that mentioned: 251

cran: Rcmdr

R Commander
Papers that mentioned: 133

cran: vegan

Community Ecology Package
Papers that mentioned: 6,903

pypi: ape

A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918

pypi: car

Papers that mentioned: 1,651

pypi: PACE

Data Quality of Experimental Data
Papers that mentioned: 13,779