Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0225615

https://doi.org/10.1371/journal.pone.0225615

An indigenous Saccharomyces uvarum population with high genetic diversity dominates uninoculated Chardonnay fermentations at a Canadian winery

Cited by: 9
Author(s): Garrett C. McCarthy, Sydney Morgan, Jonathan T. Martiniuk, Brianne L. Newman, Stephanie McCann, Vivien Measday, Daniel M. Durall
Published: almost 4 years ago

Software Mentions 14

bioconductor: Biostrings
Efficient manipulation of biological strings
Papers that mentioned: 220
bioconductor: dada2
Accurate, high-resolution sample inference from amplicon sequencing data
Papers that mentioned: 274
bioconductor: ggtree
an R package for visualization of tree and annotation data
Papers that mentioned: 474
bioconductor: ShortRead
FASTQ input and manipulation
Papers that mentioned: 119
cran: adegenet
Exploratory Analysis of Genetic and Genomic Data
Papers that mentioned: 767
cran: ape
Analyses of Phylogenetics and Evolution
Papers that mentioned: 918
cran: car
Companion to Applied Regression
Papers that mentioned: 1,651
cran: PERMANOVA
Multivariate Analysis of Variance Based on Distances and Permutations
Papers that mentioned: 6,292
cran: poppr
Genetic Analysis of Populations with Mixed Reproduction
Papers that mentioned: 251
cran: Rcmdr
R Commander
Papers that mentioned: 133
cran: vegan
Community Ecology Package
Papers that mentioned: 6,903
pypi: ape
A Productive Environment - make/rake/ant/fab-like system with support for FOSD
Papers that mentioned: 918
pypi: car
Papers that mentioned: 1,651
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779