Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1016/j.xcrm.2020.100096

https://doi.org/10.1016/j.xcrm.2020.100096

Treatment with Commonly Used Antiretroviral Drugs Induces a Type I/III Interferon Signature in the Gut in the Absence of HIV Infection

Cited by: 11
Author(s): Sean M. Hughes, Claire Levy, Fernanda Calienes, Joanne D. Stekler, Urvashi Pandey, Lucia Vojtech, Alicia R. Berard, Kenzie Birse, Laura Noël‐Romas, Brian Richardson, Jackelyn B. Golden, Michael Cartwright, Ann C. Collier, Claire E. Stevens, Marcel E. Curlin, Timothy H. Holtz, Nelly Mugo, Elizabeth Irungu, Elly Katabira, Timothy Muwonge, Javier R. Lama, Jared M. Baeten, Adam Burgener, Jairam R. Lingappa, M. Juliana McElrath, Romel D. Mackelprang, Ian McGowan, Ross D. Cranston, Mark J. Cameron, Florian Hladik
Published: about 4 years ago

Software Mentions 21

bioconductor: AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor
Papers that mentioned: 73
bioconductor: Biobase
Biobase: Base functions for Bioconductor
Papers that mentioned: 104
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: lumi
BeadArray Specific Methods for Illumina Methylation and Expression Microarrays
Papers that mentioned: 238
cran: broom
Convert Statistical Objects into Tidy Tibbles
Papers that mentioned: 39
cran: conflicted
An Alternative Conflict Resolution Strategy
Papers that mentioned: 1
cran: ggrepel
Automatically Position Non-Overlapping Text Labels with 'ggplot2'
Papers that mentioned: 164
cran: here
A Simpler Way to Find Your Files
Papers that mentioned: 11
cran: pander
An R 'Pandoc' Writer
Papers that mentioned: 11
cran: patchwork
The Composer of Plots
Papers that mentioned: 38
cran: plater
Read, Tidy, and Display Data from Microtiter Plates
Papers that mentioned: 3
cran: RColorBrewer
ColorBrewer Palettes
Papers that mentioned: 490
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: broom
Keep your desktop clutter-free.
Papers that mentioned: 39
pypi: db
Databases for Humans
Papers that mentioned: 108
pypi: here
Configures shells for easy python development
Papers that mentioned: 11
pypi: patchwork
Deployment/sysadmin operations, powered by Fabric
Papers that mentioned: 38
pypi: plater
Easily create a starter file template for different project
Papers that mentioned: 3
pypi: Scaffold
Simple project scaffolding for Python
Papers that mentioned: 1,866
pypi: skewer
Enumerate AWS resources and index them in ElasticSearch
Papers that mentioned: 29