pypi: skewer | Projects | Ecosyste.ms: Papers

10.1016/j.xcrm.2020.100096

Treatment with Commonly Used Antiretroviral Drugs Induces a Type I/III Interferon Signature in the Gut in the Absence of HIV Infection
Cited by: 11
Author(s): Sean M. Hughes, Claire Levy, Fernanda Calienes, Joanne D. Stekler, Urvashi Pandey, Lucia Vojtech, Alicia R. Berard, Kenzie Birse, Laura Noël‐Romas, Brian Richardson, Jackelyn B. Golden, Michael Cartwright, Ann C. Collier, Claire E. Stevens, Marcel E. Curlin, Timothy H. Holtz, Nelly Mugo, Elizabeth Irungu, Elly Katabira, Timothy Muwonge, Javier R. Lama, Jared M. Baeten, Adam Burgener, Jairam R. Lingappa, M. Juliana McElrath, Romel D. Mackelprang, Ian McGowan, Ross D. Cranston, Mark J. Cameron, Florian Hladik
Software Mentions: 21
Published: over 4 years ago

10.1099/mgen.0.000492

Quantitative analysis of the splice variants expressed by the major hepatitis B virus genotypes
Cited by: 13
Author(s): Chun Shen Lim, Vitina Sozzi, Margaret Littlejohn, Lilly Yuen, Nadia Warner, Brigid Betz‐Stablein, Fabio Luciani, Peter Revill, Chris M. Brown
Software Mentions: 13
Published: almost 4 years ago

10.1371/journal.ppat.1009602

Single cell analysis of host response to helminth infection reveals the clonal breadth, heterogeneity, and tissue-specific programming of the responding CD4+ T cell repertoire
Cited by: 5
Author(s): Ivy K. Brown, Nathan Dyjack, Mindy M. Miller, S. Harsha Krovi, Cydney Rios, Rachel A. Woolaver, Laura Harmacek, Ting-Hui Tu, Brian P. O’Connor, Thomas Danhorn, Brian Vestal, Laurent Gapin, Clemencia Pinilla, Max A. Seibold, James Scott‐Browne, Radleigh Santos, R. Lee Reinhardt
Software Mentions: 8
Published: over 3 years ago

10.1038/s41435-020-00118-0

Genomic profiling of T-cell activation suggests increased sensitivity of memory T cells to CD28 costimulation
Cited by: 13
Author(s): Dafni A. Glinos, Blagoje Soskic, Cayman Williams, Alan Kennedy, Luke Jostins, David M. Sansom, Gosia Trynka
Software Mentions: 7
Published: about 4 years ago

10.1080/19490976.2021.1902771

The intestinal microbiota and metabolites in patients with anorexia nervosa
Cited by: 44
Author(s): Petra Procházková, Radka Roubalová, Jiří Dvořák, Jakub Kreisinger, Martin Hill, Helena Tlaskalová‐Hogenová, Petra Tomášová, Helena Pelantová, M Cermáková, Marek Kuzma, Josef Bulant, Martin Bilej, Kvido Smitka, Alena Lambertová, Petra Holanová, Hana Papežová
Software Mentions: 6
Published: almost 4 years ago

10.1186/s12862-021-01773-1

Gut microbiota in two recently diverged passerine species: evaluating the effects of species identity, habitat use and geographic distance
Cited by: 5
Author(s): Jiří Reif, Lucie Schmiedová, Jakub Kreisinger, Tomáš Albrecht, Jiří Reif, Tomasz S. Osiejuk, Radka Reifová
Software Mentions: 6
Published: almost 4 years ago

10.1371/journal.pcbi.1004393

Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud
Cited by: 73
Author(s): Malachi Griffith, Jason Walker, Nicholas C. Spies, Benjamin J. Ainscough, Obi L. Griffith
Software Mentions: 6
Published: over 9 years ago

10.1371/journal.ppat.1008869

Macrophage maturation from blood monocytes is altered in people with HIV, and is linked to serum lipid profiles and activation indices: A model for studying atherogenic mechanisms
Cited by: 16
Author(s): Emily Bowman, Cheryl M. Cameron, Brian Richardson, Milind V. Kulkarni, Janelle Gabriel, Morgan J. Cichon, Ken M. Riedl, Yousef Mustafa, Michael Cartwright, Brandon Snyder, Subha V. Raman, David A. Zidar, Susan L. Koletar, Martin P. Playford, Nehal N. Mehta, Scott F. Sieg, Michael L. Freeman, Michael M. Lederman, Mark J. Cameron, Nicholas T. Funderburg
Software Mentions: 5
Published: over 4 years ago

10.1016/j.devcel.2018.12.026

Comparative Epigenomics Reveals that RNA Polymerase II Pausing and Chromatin Domain Organization Control Nematode piRNA Biogenesis
Cited by: 32
Author(s): Toni Beltran, Consuelo Barroso, T. Y. Birkle, Lewis Stevens, Hillel T. Schwartz, Paul W. Sternberg, Hélène Fradin, Kristin C. Gunsalus, Fabio Piano, Garima Sharma, Chiara Cerrato, Julie Ahringer, Enrique Martínez-Pérez, Mark Blaxter, Peter Sarkies
Software Mentions: 5
Published: almost 6 years ago

10.3390/cells10081923

Overexpression and Activation of αvβ3 Integrin Differentially Affects TGFβ2 Signaling in Human Trabecular Meshwork Cells
Cited by: 11
Author(s): Mark S. Filla, Keith Meyer, Jennifer A. Faralli, Donna M. Peters
Software Mentions: 5
Published: over 3 years ago

10.3390/ijms21186762

Changes in Nuclear Shape and Gene Expression in Response to Simulated Microgravity Are LINC Complex-Dependent
Cited by: 13
Author(s): Srujana Neelam, Brian Richardson, Richard Barker, Ceasar Udave, Simon Gilroy, Mark J. Cameron, Howard G. Levine, Ye Zhang
Software Mentions: 4
Published: over 4 years ago

10.1016/j.celrep.2020.108337

Human and Mouse Transcriptome Profiling Identifies Cross-Species Homology in Pulmonary and Lymph Node Mononuclear Phagocytes
Cited by: 37
Author(s): Sonia M. Leach, Sophie L. Gibbings, Anita Tewari, Shaikh M. Atif, Brian Vestal, Thomas Danhorn, William J. Janssen, Tor D. Wager, Claudia Jakubzick
Software Mentions: 4
Published: about 4 years ago

10.1371/journal.ppat.1009732

Germinal Center T follicular helper (GC-Tfh) cell impairment in chronic HIV infection involves c-Maf signaling
Cited by: 2
Author(s): Marita Chakhtoura, Mike Fang, Rafael Cubas, Margaret O'Connor, Carmen N. Nichols, Brian Richardson, Aarthi Talla, Susan Moir, Mark J. Cameron, Virginie Tardif, Elias K. Haddad
Software Mentions: 4
Published: over 3 years ago

10.1016/j.tranon.2018.04.002

Long Noncoding RNAs AC009014.3 and Newly Discovered XPLAID Differentiate Aggressive and Indolent Prostate Cancers
Cited by: 7
Author(s): Anthony J. Cesnik, Bing Yang, Andrew Truong, Tyler Etheridge, Michele Spiniello, Maisie I. Steinbrink, Michael R. Shortreed, Brian L. Frey, David F. Jarrard, Lloyd M. Smith
Software Mentions: 4
Published: over 6 years ago

10.1371/journal.pone.0216992

Adaptive genetic variation underlies biocomplexity of Atlantic Cod in the Gulf of Maine and on Georges Bank
Cited by: 12
Author(s): Gemma V. Clucas, Lisa A. Kerr, Steven X. Cadrin, Douglas R. Zemeckis, Graham D. Sherwood, David Goethel, Zachary T. Whitener, Adrienne I. Kovach
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-020-07037-4

Gene expression within the periaqueductal gray is linked to vocal behavior and early-onset parkinsonism in Pink1 knockout rats
Cited by: 12
Author(s): Cynthia A. Kelm‐Nelson, Stephen C. Gammie
Software Mentions: 3
Published: over 4 years ago

10.7554/eLife.66063

Distinct skeletal stem cell types orchestrate long bone skeletogenesis
Cited by: 35
Author(s): Thomas H. Ambrosi, Rahul Sinha, Holly Steininger, Malachia Hoover, Matthew P. Murphy, Lauren S. Koepke, Yuting Wang, Wan-Jin Lu, Maurizio Morri, Norma Neff, Irving L. Weissman, Michael T. Longaker, Charles Chan
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.ppat.1009861

Integrative multi-omics profiling reveals cAMP-independent mechanisms regulating hyphal morphogenesis in Candida albicans
Cited by: 9
Author(s): Kyung-Hee Min, Thomas F. Jannace, Haoyu Si, Krishna R. Veeramah, John D. Haley, James B. Konopka
Software Mentions: 3
Published: over 3 years ago

10.3390/ani9080523

Global Mapping of H3K4 Trimethylation (H3K4me3) and Transcriptome Analysis Reveal Genes Involved in the Response to Epidemic Diarrhea Virus Infections in Pigs
Cited by: 12
Author(s): Haifei Wang, Yang Li, Huan Qu, Hanping Feng, Shenglong Wu, Wenbin Bao
Software Mentions: 3
Published: over 5 years ago

10.1099/mgen.0.000497

Intraspecies plasmid and genomic variation of Mycobacterium kubicae revealed by the complete genome sequences of two clinical isolates
Cited by: 7
Author(s): Jo Hendrix, L. Elaine Epperson, David Durbin, Jennifer R. Honda, Michael Strong
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0231752

Retinal astrocytes transcriptome reveals Cyp1b1 regulates the expression of genes involved in cell adhesion and migration
Cited by: 7
Author(s): Juliana Falero-Perez, Christine M. Sorenson, Nader Sheibani
Software Mentions: 2
Published: over 4 years ago

10.1038/srep37302

Genetic determination of the enhanced drought resistance of rice maintainer HuHan2B by pedigree breeding
Cited by: 8
Author(s): Haibin Wei, Fang Fěng, Qiaojun Lou, Hui Xia, Xiaoyan Ma, Yunhua Liu, Kai Xu, Yu Xing, Hanwei Mei, Lijun Luo
Software Mentions: 2
Published: about 8 years ago

10.1002/mgg3.1418

Whole genome sequencing identifies a duplicated region encompassing Xq13.2q13.3 in a large Iranian family with intellectual disability
Cited by: 0
Author(s): Sepideh Mehvari, Farzaneh Larti, Hao Hu, Zohreh Fattahi, Maryam Beheshtian, Seyedeh Sedigheh Abedini, Sanaz Arzhangi, Hans‐Hilger Ropers, Vera M. Kalscheuer, Daniel Auld, Kimia Kahrizi, Yasser Riazalhosseini, Hossein Najmabadi
Software Mentions: 2
Published: over 4 years ago

10.1038/s41598-018-28217-z

Genome-Wide Determination of Gene Essentiality by Transposon Insertion Sequencing in Yeast Pichia pastoris
Cited by: 23
Author(s): Jinxiang Zhu, Ruiqing Gong, Qiaoyun Zhu, Qun He, Ning Xu, Yichun Xu, Menghao Cai, Xiangshan Zhou, Yuanxing Zhang, Mian Zhou
Software Mentions: 2
Published: over 6 years ago

10.1128/genomeA.00555-15

Draft Genome Sequence of Pseudomonas syringae pv. persicae NCPPB 2254
Cited by: 3
Author(s): Wenjun Zhao, Hongshan Jiang, Qian Tian, Jie Hu
Software Mentions: 1
Published: over 9 years ago

10.1186/s12864-017-3529-5

Variability among Cucurbitaceae species (melon, cucumber and watermelon) in a genomic region containing a cluster of NBS-LRR genes
Cited by: 16
Author(s): Jordi Morata, Pere Puigdomènech
Software Mentions: 1
Published: almost 8 years ago

10.3390/cancers11091329

Morpho-Molecular Assessment Indicates New Prognostic Aspects and Personalized Therapeutic Options in Sinonasal Melanoma
Cited by: 8
Author(s): Sandra N. Freiberger, G Morand, Patrick Turko, U. Wager, Reinhard Dummer, Martin Hüllner, David Holzmann, Niels J. Rupp, Mitchell P. Levesque
Software Mentions: 1
Published: over 5 years ago

10.3390/v12101093

Thapsigargin at Non-Cytotoxic Levels Induces a Potent Host Antiviral Response that Blocks Influenza A Virus Replication
Cited by: 15
Author(s): Leah Goulding, Jiayun Yang, Zhimin Jiang, Hongyu Zhang, Daniel Lea, Richard D. Emes, Tania Dottorini, Juan Pu, Jinhua Liu, Kin-Chow Chang
Software Mentions: 1
Published: over 4 years ago

10.1038/srep20200

Study design requirements for RNA sequencing-based breast cancer diagnostics
Cited by: 2
Author(s): Arvind Singh Mer, Daniel Klevebring, Henrik Grönberg, Mattias Rantalainen
Software Mentions: 1
Published: almost 9 years ago

Ecosyste.ms: Papers

Projects: pypi: skewer

Papers Mentioning skewer 29