Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.ppat.1009602

https://doi.org/10.1371/journal.ppat.1009602

Single cell analysis of host response to helminth infection reveals the clonal breadth, heterogeneity, and tissue-specific programming of the responding CD4+ T cell repertoire

Cited by: 5
Author(s): Ivy K. Brown, Nathan Dyjack, Mindy M. Miller, S. Harsha Krovi, Cydney Rios, Rachel A. Woolaver, Laura Harmacek, Ting-Hui Tu, Brian P. O’Connor, Thomas Danhorn, Brian Vestal, Laurent Gapin, Clemencia Pinilla, Max A. Seibold, James Scott‐Browne, Radleigh Santos, R. Lee Reinhardt
Published: over 3 years ago

Software Mentions 8

bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: Seurat
Tools for Single Cell Genomics
Papers that mentioned: 1,512
cran: treemap
Treemap Visualization
Papers that mentioned: 31
pypi: bowtie
Interactive Dashboard Toolkit.
Papers that mentioned: 1,566
pypi: MACS2
Model Based Analysis for ChIP-Seq data
Papers that mentioned: 1,203
pypi: skewer
Enumerate AWS resources and index them in ElasticSearch
Papers that mentioned: 29
pypi: torrent
python data scharing
Papers that mentioned: 7
pypi: treemap
Treemap creator with interactive viewer - now with display of .coverage files
Papers that mentioned: 31