Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pcbi.1004393

https://doi.org/10.1371/journal.pcbi.1004393

Informatics for RNA Sequencing: A Web Resource for Analysis on the Cloud

Cited by: 73
Author(s): Malachi Griffith, Jason Walker, Nicholas C. Spies, Benjamin J. Ainscough, Obi L. Griffith
Published: over 9 years ago

Software Mentions 6

bioconductor: SeqGSEA
Gene Set Enrichment Analysis (GSEA) of RNA-Seq Data: integrating differential expression and splicing
Papers that mentioned: 18
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
pypi: HTSeq
A framework to process and analyze data from high-throughput sequencing (HTS) assays
Papers that mentioned: 3,071
pypi: skewer
Enumerate AWS resources and index them in ElasticSearch
Papers that mentioned: 29
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017
pypi: tuxedo
Python3 bindings for writing Oracle Tuxedo clients and servers
Papers that mentioned: 17