Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: tuxedo
https://packages.ecosyste.ms/registries/pypi.org/packages/tuxedo
Python3 bindings for writing Oracle Tuxedo clients and servers
28 versions
Latest release: almost 2 years ago
121 downloads last month
Papers Mentioning tuxedo 17
10.1371/journal.pcbi.1004393
Informatics for RNA Sequencing: A Web Resource for Analysis on the CloudCited by: 73
Author(s): Malachi Griffith, Jason Walker, Nicholas C. Spies, Benjamin J. Ainscough, Obi L. Griffith
Software Mentions: 6
Published: over 9 years ago
10.1371/journal.pone.0184471
Genome-wide miRNA response to anacardic acid in breast cancer cellsCited by: 14
Author(s): David J. Schultz, Penn Muluhngwi, Negin Alizadeh-Rad, Madelyn A. Green, Eric C. Rouchka, Sabine Waigel, Carolyn M. Klinge
Software Mentions: 5
Published: about 7 years ago
10.1371/journal.pone.0177750
Inflammatory and apoptotic remodeling in autonomic nervous system following myocardial infarctionCited by: 23
Author(s): Chen Gao, Kimberly Howard‐Quijano, Christoph Rau, Tatsuo Takamiya, Yang Song, Kalyanam Shivkumar, Yibin Wang, Aman Mahajan
Software Mentions: 4
Published: over 7 years ago
10.7717/peerj.2223
Transcriptome analysis of<i>Pseudomonas aeruginosa</i>PAO1 grown at both body and elevated temperaturesCited by: 19
Author(s): Kok-Gan Chan, Kumutha Priya, Chien‐Yi Chang, Azimah Abd Rahman, Kok Keng Tee, Wai‐Fong Yin
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0076773
Transcription Factors OVOL1 and OVOL2 Induce the Mesenchymal to Epithelial Transition in Human CancerCited by: 211
Author(s): Hernán Roca, James R. Hernandez, Savannah Weidner, Richard C. McEachin, David Fuller, Sudha Sud, Taibriana Schumann, John E. Wilkinson, Alexander Zaslavsky, Hangwen Li, Christopher A. Maher, Stephanie Daignault‐Newton, Patrick Healy, Kenneth J. Pienta
Software Mentions: 2
Published: about 11 years ago
10.1038/celldisc.2017.43
Transcriptome-wide identification of the RNA-binding landscape of the chromatin-associated protein PARP1 reveals functions in RNA biogenesisCited by: 47
Author(s): Manana Melikishvili, Julia H. Chariker, Eric C. Rouchka, Yvonne Fondufe‐Mittendorf
Software Mentions: 2
Published: almost 7 years ago
10.3390/genes11040467
Transcriptomic Profiling Identifies Differentially Expressed Genes in Palbociclib-Resistant ER+ MCF7 Breast Cancer CellsCited by: 10
Author(s): Lilibeth Lanceta, Conor O’Neill, Nadiia Lypova, Xiahong Li, Eric C. Rouchka, Sabine Waigel, Jorge G. Gómez-Gutiérrez, Jason Chesney, Yoannis Imbert-Fernandez
Software Mentions: 2
Published: over 4 years ago
10.1186/s12864-018-5384-4
Diffusible signal factor (DSF)-mediated quorum sensing modulates expression of diverse traits in Xanthomonas citri and responses of citrus plants to promote diseaseCited by: 30
Author(s): Lei Li, Jinyun Li, Yunzeng Zhang, Nian Wang
Software Mentions: 2
Published: almost 6 years ago
10.1186/1752-0509-8-29
A bioinformatics approach reveals novel interactions of the OVOL transcription factors in the regulation of epithelial – mesenchymal cell reprogramming and cancer progressionCited by: 15
Author(s): Hernán Roca, Manjusha Pande, Jeffrey S. Huo, James R. Hernandez, James D. Cavalcoli, Kenneth J. Pienta, Richard C. McEachin
Software Mentions: 2
Published: over 10 years ago
10.1007/s10549-021-06127-5
Differential gene expression analysis of palbociclib-resistant TNBC via RNA-seqCited by: 4
Author(s): Lilibeth Lanceta, Nadiia Lypova, Conor O’Neill, Xiaohong Li, Eric C. Rouchka, Jason Chesney, Yoannis Imbert-Fernandez
Software Mentions: 2
Published: over 3 years ago
10.1038/srep29933
The myocardial regenerative potential of three-dimensional engineered cardiac tissues composed of multiple human iPS cell-derived cardiovascular cell lineagesCited by: 87
Author(s): Hidetoshi Masumoto, Takeichiro Nakane, Joseph P. Tinney, Fangping Yuan, Fei Ye, William J. Kowalski, Kenji Minakata, Ryuzo Sakata, Jun Yamashita, Bradley B. Keller
Software Mentions: 2
Published: over 8 years ago
10.7554/eLife.38389
Importance of miRNA stability and alternative primary miRNA isoforms in gene regulation during Drosophila developmentCited by: 31
Author(s): Liqun Zhou, Mandy Yu Theng Lim, Prameet Kaur, Abil Saj, Diane Bortolamiol-Bécet, Vikneswaran Gopal, Nicholas S. Tolwinski, Greg Tucker‐Kellogg, Katsutomo Okamura
Software Mentions: 2
Published: over 6 years ago
10.3390/jcm4020282
Tapping Stem Cells to Target AMD: Challenges and ProspectsCited by: 19
Author(s): Caroline Brandl, Felix Graßmann, Julia Riolfi, Bernhard H. F. Weber
Software Mentions: 1
Published: almost 10 years ago
10.3390/ijms21239148
Genome-Wide Association Studies and Transcriptome Changes during Acclimation and Deacclimation in Divergent Brassica napus VarietiesCited by: 9
Author(s): David P. Horvath, Jiaping Zhang, Wun S. Chao, Ashok Mandal, Mukhlesur Rahman, James V. Anderson
Software Mentions: 1
Published: almost 4 years ago
10.1038/s41598-017-10186-4
Gene expression analysis of whole blood RNA from pigs infected with low and high pathogenic African swine fever virusesCited by: 40
Author(s): Crystal Jaing, Raymond R. R. Rowland, Jonathan Allen, Andrea Certoma, James B. Thissen, John Bingham, Brenton Rowe, John R. White, James W. Wynne, Dayna A. Johnson, Natasha N. Gaudreault, David T. Williams
Software Mentions: 1
Published: about 7 years ago
10.1093/gigascience/giy050
The long noncoding RNA landscape of neuroendocrine prostate cancer and its clinical implicationsCited by: 49
Author(s): Varune Rohan Ramnarine, Mohammed Alshalalfa, Fan Mo, Noushin Nabavi, Nicholas Erho, Mandeep Takhar, Robert Shukin, Sonal Brahmbhatt, Alexander Gawronski, Maxim Kobelev, Mannan Nouri, Dong Lin, Harrison Tsai, Tamara L. Lotan, R. Karnes, Mark A. Rubin, Amina Zoubeidi, Martin Gleave, Cenk Sahinalp, Alexander W. Wyatt, Stanislav V. Volik, Himisha Beltran, Elai Davicioni, Yuzhuo Wang, Colin C. Collins
Software Mentions: 1
Published: over 6 years ago
10.1111/jcmm.13745
Triggering of cancer cell cycle arrest by a novel scorpion venom‐derived peptide—GonearrestideCited by: 31
Author(s): Li Bin, Peng Lyu, Xinping Xi, Lilin Ge, Ravikiran Mahadevappa, Chris Shaw, Hang Fai Kwok
Software Mentions: 1
Published: over 6 years ago